Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0005570

Physical Location & Seq

Genomic Coordinates Forward (+)

5340644 .. 5342050

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAGGAGAATATAAGTACAAGAAGGGGTTATGGACAAAGGAGGAGGATGAGATTCTCCTGGACTACATAAGGGTACATGGAAGAGGCCGCTGGAACCGCATTCCCAAGGTCACCGATATGCTGCACAAATGTATAGTACTAGTGTATAATTATGCAATATATGCACTTAAATTCTTTTTTATTCCTAAAAATTATAGTACTGATTTAGTTATATACGTAGGCTTAAGGAGGAGTGGGAAGAGCTGCAGGTTGAGGTGGCTCAACCATCTCAGCCCAAATGTGAAGCGCGGGGATTTTTCTGAGGAAGAAGAAGACCTCATTATCAGACTTCACAATCTCCTTGGAAACAGGTGGTCTCTGATTGCGGGGCGTGTACCAGGAAGAACTGACAACCAAGTAAAGAACTACTGGAACACTCATTTGTACAAAAAGCTTAACGCCATAAAAAAGCAGCAGACACCTAGAAAAGTTGATGTTGTTTCGACGTCCAAAACAACTACTCACAGCTCTTCTGCTGCTCAAGAACTGGCAGGAGACAAACTAGTACACCAACACAAACTGCTCGAGGCGCCGGACTCGGACTCAAATTCCGTCACGAAGAGTAATGATCAAAACCCAAATATGGATATTGTTGCAGCTGAGGATTCTAATGCAGAAGAAGAAGAGATAGAATGGATGGCCAAGCATTGTACCGAGTTGCTTTCTTGTTCTAGTTATGGCAATATGATTAGCTGGGACATGGTGGAATTTCAGCAAGGATACCATCTTGACCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

261

Amino Acids

30.18

Weight (kDa)

7.15

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27920 AT5G14750 AT5G14750 AT5G14750 AT5G14750 AT5G40330
fragaria_vesca	FvH4_5g05280 FvH4_5g05280 FvH4_5g05280
malus_domestica	MD06G1174200.v1.1 MD13G1092300.v1.1 MD13G1092400.v1.1 MD14G1180700.v1.1 MD14G1180900.v1.1 MD14G1181000.v1.1 MD16G1093200.v1.1
prunus_persica	Prupe.1G253400_v2.0.a1 Prupe.5G174200_v2.0.a1
pyrus_communis	pycom06g15550 pycom13g08020 pycom14g15080
rosa_chinensis	RchiOBHm_Chr7g0193591
rosa_laevigata	RLG00000004258
rosa_roxburghii	Rroxscaffold_3G00261980
rosa_rugosa	Rorug07G0010600
rosa_samantha	Rh7AG137400 Rh7BG137600
rosa_wichuraiana	Rw7G011700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	240
AccB1I	GGYRCC	1 cut(s)	571
AccII	CGCG	1 cut(s)	291
AciI	CCGC	4 cut(s)	91, 100, 291, 368
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	3 cut(s)	173, 589, 749
AcyI	GRCGYC	2 cut(s)	488, 572
AfaI	GTAC	8 cut(s)	20, 78, 141, 202, 378, 428, 549, 694
AfiI	CCNNNNNNNGG	1 cut(s)	625
AflII	CTTAAG	1 cut(s)	226
AhlI	ACTAGT	2 cut(s)	142, 544
AjnI	CCWGG	2 cut(s)	60, 379
AluBI	AGCT	5 cut(s)	246, 436, 510, 641, 735
AluI	AGCT	5 cut(s)	246, 436, 510, 641, 735
Alw26I	GTCTC	2 cut(s)	363, 531
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	88, 681
ApeKI	GCWGC	5 cut(s)	124, 246, 454, 518, 638
ApoI	RAATTY	3 cut(s)	173, 589, 749
AspLEI	GCGC	2 cut(s)	291, 574
AsuHPI	GGTGA	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	566
BalI	TGGCCA	1 cut(s)	683
BanI	GGYRCC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	321
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	5 cut(s)	111, 233, 466, 505, 650
BccI	CCATC	3 cut(s)	276, 673, 774
BciT130I	CCWGG	2 cut(s)	62, 381
BciVI	GTATCC	1 cut(s)	755
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	2 cut(s)	363, 531
BcuI	ACTAGT	2 cut(s)	142, 544
BfaI	CTAG	4 cut(s)	143, 465, 545, 714
BfmI	CTRYAG	1 cut(s)	247
BfoI	RGCGCY	1 cut(s)	575
BfrI	CTTAAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	240
BfuI	GTATCC	1 cut(s)	755
BisI	GCNGC	6 cut(s)	91, 125, 247, 455, 519, 639
BlsI	GCNGC	6 cut(s)	92, 126, 248, 456, 520, 640
BmcAI	AGTACT	2 cut(s)	141, 202
Bme1390I	CCNGG	2 cut(s)	62, 381
BmeT110I	CYCGRG	1 cut(s)	566
BmiI	GGNNCC	2 cut(s)	98, 573
BmrFI	CCNGG	2 cut(s)	62, 381
BpiI	GAAGAC	1 cut(s)	321
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	507
BsaAI	YACGTR	1 cut(s)	220
BsaHI	GRCGYC	2 cut(s)	488, 572
BsaI	GGTCTC	1 cut(s)	363
BsaJI	CCNNGG	2 cut(s)	108, 343
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	2 cut(s)	416, 534
BseBI	CCWGG	2 cut(s)	62, 381
BseDI	CCNNGG	2 cut(s)	108, 343
BseGI	GGATG	2 cut(s)	55, 684
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMII	CTCAG	3 cut(s)	286, 294, 633
BseNI	ACTGG	2 cut(s)	416, 534
BseRI	GAGGAG	2 cut(s)	59, 247
BseXI	GCAGC	5 cut(s)	111, 233, 466, 505, 650
BseYI	CCCAGC	1 cut(s)	735
BsgI	GTGCAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	90, 683
BshNI	GGYRCC	1 cut(s)	571
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	363, 531
BsmFI	GGGAC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	90, 683
Bso31I	GGTCTC	1 cut(s)	363
BsoBI	CYCGRG	1 cut(s)	566
Bsp1407I	TGTACA	1 cut(s)	426
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	4 cut(s)	91, 100, 291, 368
BspANI	GGCC	2 cut(s)	90, 683
BspCNI	CTCAG	3 cut(s)	285, 295, 634
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	98, 573
BspMAI	CTGCAG	1 cut(s)	251
BspMI	ACCTGC	1 cut(s)	240
BspQI	GCTCTTC	2 cut(s)	236, 517
BspT107I	GGYRCC	1 cut(s)	571
BspTI	CTTAAG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	363
BsrGI	TGTACA	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	416, 534
BssECI	CCNNGG	2 cut(s)	108, 343
BssMI	GATC	1 cut(s)	610
BssNI	GRCGYC	2 cut(s)	488, 572
BssT1I	CCWWGG	2 cut(s)	108, 343
Bst2UI	CCWGG	2 cut(s)	62, 381
Bst6I	CTCTTC	5 cut(s)	79, 236, 517, 596, 660
BstACI	GRCGYC	2 cut(s)	488, 572
BstAFI	CTTAAG	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	426
BstBAI	YACGTR	1 cut(s)	220
BstDEI	CTNAG	3 cut(s)	272, 303, 642
BstEII	GGTNACC	1 cut(s)	112
BstF5I	GGATG	2 cut(s)	55, 684
BstFNI	CGCG	1 cut(s)	291
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	291, 574
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	2 cut(s)	363, 531
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 164, 571
BstNI	CCWGG	2 cut(s)	62, 381
BstPI	GGTNACC	1 cut(s)	112
BstSCI	CCNGG	2 cut(s)	60, 379
BstSFI	CTRYAG	1 cut(s)	247
BstSNI	TACGTA	1 cut(s)	220
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	111, 233, 466, 505, 650
BstV2I	GAAGAC	1 cut(s)	321
BsuI	GTATCC	1 cut(s)	755
BsuRI	GGCC	2 cut(s)	90, 683
BtsCI	GGATG	2 cut(s)	55, 684
BveI	ACCTGC	1 cut(s)	240
CfoI	GCGC	2 cut(s)	291, 574
Csp6I	GTAC	8 cut(s)	19, 77, 140, 201, 377, 427, 548, 693
CviAII	CATG	2 cut(s)	80, 742
CviQI	GTAC	8 cut(s)	19, 77, 140, 201, 377, 427, 548, 693
DdeI	CTNAG	3 cut(s)	272, 303, 642
DinI	GGCGCC	1 cut(s)	573
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	5 cut(s)	79, 236, 517, 596, 660
EarI	CTCTTC	5 cut(s)	79, 236, 517, 596, 660
Eco105I	TACGTA	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	108, 343
Eco31I	GGTCTC	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	566
Eco91I	GGTNACC	1 cut(s)	112
EcoO65I	GGTNACC	1 cut(s)	112
EcoRII	CCWGG	2 cut(s)	60, 379
EcoT14I	CCWWGG	2 cut(s)	108, 343
EgeI	GGCGCC	1 cut(s)	573
EheI	GGCGCC	1 cut(s)	573
ErhI	CCWWGG	2 cut(s)	108, 343
FaeI	CATG	2 cut(s)	83, 745
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	2 cut(s)	79, 741
FauI	CCCGC	2 cut(s)	284, 361
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	6 cut(s)	91, 125, 247, 455, 519, 639
FokI	GGATG	2 cut(s)	62, 691
Fsp4HI	GCNGC	6 cut(s)	91, 125, 247, 455, 519, 639
FspBI	CTAG	4 cut(s)	143, 465, 545, 714
GlaI	GCGC	2 cut(s)	290, 573
GluI	GCNGC	6 cut(s)	91, 125, 247, 455, 519, 639
GsaI	CCCAGC	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	2 cut(s)	90, 683
HapII	CCGG	1 cut(s)	575
HhaI	GCGC	2 cut(s)	291, 574
Hin1I	GRCGYC	2 cut(s)	488, 572
Hin1II	CATG	2 cut(s)	83, 745
Hin6I	GCGC	2 cut(s)	289, 572
HinP1I	GCGC	2 cut(s)	289, 572
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	4 cut(s)	55, 578, 584, 647
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	377, 550
Hpy188I	TCNGA	4 cut(s)	304, 329, 363, 583
Hpy188III	TCNNGA	3 cut(s)	524, 598, 770
Hpy8I	GTNNAC	2 cut(s)	377, 550
Hpy99I	CGWCG	1 cut(s)	490
HpyAV	CCTTC	1 cut(s)	19
HpyCH4IV	ACGT	2 cut(s)	219, 488
HpyCH4V	TGCA	6 cut(s)	127, 158, 167, 249, 638, 656
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 164, 571
HpyF3I	CTNAG	3 cut(s)	272, 303, 642
HpySE526I	ACGT	2 cut(s)	219, 488
Hsp92I	GRCGYC	2 cut(s)	488, 572
Hsp92II	CATG	2 cut(s)	83, 745
HspAI	GCGC	2 cut(s)	289, 572
KasI	GGCGCC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	610
LguI	GCTCTTC	2 cut(s)	236, 517
Lsp1109I	GCAGC	5 cut(s)	111, 233, 466, 505, 650
MaeI	CTAG	4 cut(s)	143, 465, 545, 714
MaeII	ACGT	2 cut(s)	219, 488
MaeIII	GTNAC	2 cut(s)	112, 595
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	5 cut(s)	151, 173, 193, 589, 749
MluNI	TGGCCA	1 cut(s)	683
Mly113I	GGCGCC	1 cut(s)	572
MlyI	GAGTC	2 cut(s)	572, 578
MnlI	CCTC	9 cut(s)	37, 40, 80, 225, 249, 298, 329, 562, 637
Mox20I	TGGCCA	1 cut(s)	683
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	3 cut(s)	171, 227, 438
MslI	CAYNNNNRTG	1 cut(s)	119
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	2 cut(s)	93, 641
MspCI	CTTAAG	1 cut(s)	226
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	62, 381
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	62, 381
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	99, 164, 571
NarI	GGCGCC	1 cut(s)	572
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	2 cut(s)	83, 745
NlaIV	GGNNCC	2 cut(s)	98, 573
NmuCI	GTSAC	2 cut(s)	112, 595
PaeR7I	CTCGAG	1 cut(s)	566
PciSI	GCTCTTC	2 cut(s)	236, 517
PctI	GAATGC	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	55, 647
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	6 cut(s)	92, 126, 248, 456, 520, 640
PleI	GAGTC	2 cut(s)	572, 578
PluTI	GGCGCC	1 cut(s)	575
PpsI	GAGTC	2 cut(s)	572, 578
Ppu21I	YACGTR	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	60, 379
PspEI	GGTNACC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	735
PspGI	CCWGG	2 cut(s)	60, 379
PspN4I	GGNNCC	2 cut(s)	98, 573
PspXI	VCTCGAGB	1 cut(s)	566
PstI	CTGCAG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	8 cut(s)	20, 78, 141, 202, 378, 428, 549, 694
RsaNI	GTAC	8 cut(s)	19, 77, 140, 201, 377, 427, 548, 693
RseI	CAYNNNNRTG	1 cut(s)	119
SapI	GCTCTTC	2 cut(s)	236, 517
SaqAI	TTAA	3 cut(s)	171, 227, 438
SatI	GCNGC	6 cut(s)	91, 125, 247, 455, 519, 639
Sau3AI	GATC	1 cut(s)	610
ScaI	AGTACT	2 cut(s)	141, 202
SchI	GAGTC	2 cut(s)	572, 578
ScrFI	CCNGG	2 cut(s)	62, 381
SfcI	CTRYAG	1 cut(s)	247
SfoI	GGCGCC	1 cut(s)	573
Sfr274I	CTCGAG	1 cut(s)	566
SlaI	CTCGAG	1 cut(s)	566
SmiMI	CAYNNNNRTG	1 cut(s)	119
SmlI	CTYRAG	3 cut(s)	226, 522, 566
SmoI	CTYRAG	3 cut(s)	226, 522, 566
SnaBI	TACGTA	1 cut(s)	220
SpeI	ACTAGT	2 cut(s)	142, 544
Sse9I	AATT	5 cut(s)	151, 173, 193, 589, 749
SsiI	CCGC	4 cut(s)	91, 100, 291, 368
SspDI	GGCGCC	1 cut(s)	571
SspMI	CTAG	4 cut(s)	143, 465, 545, 714
StyD4I	CCNGG	2 cut(s)	60, 379
StyI	CCWWGG	2 cut(s)	108, 343
TaiI	ACGT	2 cut(s)	222, 491
TaqI	TCGA	2 cut(s)	485, 567
TasI	AATT	5 cut(s)	151, 173, 193, 589, 749
TatI	WGTACW	5 cut(s)	18, 139, 200, 426, 547
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	2 cut(s)	55, 647
Tru1I	TTAA	3 cut(s)	171, 227, 438
Tru9I	TTAA	3 cut(s)	171, 227, 438
TseFI	GTSAC	2 cut(s)	112, 595
TseI	GCWGC	5 cut(s)	124, 246, 454, 518, 638
Tsp45I	GTSAC	2 cut(s)	112, 595
TspGWI	ACGGA	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	226
XapI	RAATTY	3 cut(s)	173, 589, 749
XhoI	CTCGAG	1 cut(s)	566
XspI	CTAG	4 cut(s)	143, 465, 545, 714
ZraI	GACGTC	1 cut(s)	489
ZrmI	AGTACT	2 cut(s)	141, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.