Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

14877890 .. 14879792

Gene Structure 1903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G42790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAGGTGGAGCTGCTCTCTACAATCCTCGAACTGTCGAAGAAGTTTTCAAGGATTTCAAAGGTCGTCGTACTGCCATTGTCAAAGCTCTCACCACCGATGTTCAAGAGTTTTACCAACAATGTGACCCTGAGAAGGAGAATCTTTGCTTGTATGGGTTACCGAATGAAGAATGGGAAGTGAATTTACCAGCTGAAGAAGTGCCTCCTGAGTTACCAGAGCCAGCTCTTGGTATTAACTTTGCTAGGGATGGGCTCTCTGAAAAGGAATGGCTTTCGCTTGTTGCTATTCACAGTGACGCTTGGTTACTGTCTGTCTCGTTTTACTTTGGCTCAAGGTTTTCTTTCCACAAGGAAGAGAGGAAGCGTTTGTTCAACATGATCAATGATGTTCCTACTATATTTGAAGTAGTGACTGGAATGGCTAAAGCAAAGGACAAGTCATCTGCTGCAAATCAAAACGGAAACAAATCCAAGTCTAACTCTAAAGTTAGAACTTCAGAGGGAAAAAGCTCAAAGACCAAGCAGCCAAAAGAGGAGGACGAAGAAATAGATGAAGATGATGAGGATGACCACGGGGAAACCCTTTGTGGAGCCTGTGGAGACAGTGATGGTGCTGATGAATTCTGGATCTGCTGTGACCTTTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACTCCAGCTAGAGCTGAGCATATCAAACAATACAAGTGCCCTTCATGCAGCAACAAAAGAGCTCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

250

Amino Acids

28.21

Weight (kDa)

5.04

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	12 - 139	7.9e-67	Alfin
PHD	PF00628	197 - 243	1.7e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AclWI	GGATC	1 cut(s)	638
AcsI	RAATTY	2 cut(s)	184, 623
AcuI	CTGAAG	2 cut(s)	216, 483
AfaI	GTAC	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	136, 230
AgsI	TTSAA	5 cut(s)	52, 61, 107, 376, 407
AluBI	AGCT	9 cut(s)	14, 89, 194, 227, 513, 689, 695, 743, 749
AluI	AGCT	9 cut(s)	14, 89, 194, 227, 513, 689, 695, 743, 749
Alw21I	GWGCWC	1 cut(s)	745
Alw26I	GTCTC	2 cut(s)	322, 597
AlwI	GGATC	1 cut(s)	638
Ama87I	CYCGRG	1 cut(s)	744
ApeKI	GCWGC	4 cut(s)	14, 449, 526, 729
ApoI	RAATTY	2 cut(s)	184, 623
ArsI	GACNNNNNNTTYG	2 cut(s)	425, 457
Asp700I	GAANNNNTTC	1 cut(s)	656
AsuHPI	GGTGA	1 cut(s)	85
AvaI	CYCGRG	1 cut(s)	744
BaeGI	GKGCMC	1 cut(s)	722
BanII	GRGCYC	2 cut(s)	258, 745
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
Bbv12I	GWGCWC	1 cut(s)	745
BbvI	GCAGC	3 cut(s)	436, 538, 741
BccI	CCATC	2 cut(s)	245, 605
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	322, 597
BfaI	CTAG	2 cut(s)	246, 690
BisI	GCNGC	4 cut(s)	15, 450, 527, 730
BlpI	GCTNAGC	1 cut(s)	696
BlsI	GCNGC	4 cut(s)	16, 451, 528, 731
BmeT110I	CYCGRG	1 cut(s)	744
BmiI	GGNNCC	2 cut(s)	595, 659
BplI	GAGNNNNNCTC	1 cut(s)	35
BpmI	CTGGAG	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	696
BpuEI	CTTGAG	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	574, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 230
Bse1I	ACTGG	1 cut(s)	421
BseDI	CCNNGG	2 cut(s)	574, 661
BseGI	GGATG	2 cut(s)	256, 574
BseLI	CCNNNNNNNGG	2 cut(s)	136, 230
BseMII	CTCAG	3 cut(s)	123, 201, 687
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	551
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	3 cut(s)	436, 538, 741
BsiHKAI	GWGCWC	1 cut(s)	745
BsiHKCI	CYCGRG	1 cut(s)	744
BslI	CCNNNNNNNGG	2 cut(s)	136, 230
BsmAI	GTCTC	2 cut(s)	322, 597
BsoBI	CYCGRG	1 cut(s)	744
Bsp1286I	GDGCHC	3 cut(s)	258, 722, 745
Bsp143I	GATC	3 cut(s)	381, 630, 678
Bsp1720I	GCTNAGC	1 cut(s)	696
Bsp19I	CCATGG	1 cut(s)	661
BspCNI	CTCAG	3 cut(s)	124, 202, 688
BspLI	GGNNCC	2 cut(s)	595, 659
BspPI	GGATC	1 cut(s)	638
BsrI	ACTGG	1 cut(s)	421
BssECI	CCNNGG	2 cut(s)	574, 661
BssMI	GATC	3 cut(s)	381, 630, 678
BssT1I	CCWWGG	1 cut(s)	661
Bst4CI	ACNGT	4 cut(s)	37, 296, 312, 608
Bst6I	CTCTTC	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	132, 210, 696
BstDSI	CCRYGG	2 cut(s)	574, 661
BstEII	GGTNACC	1 cut(s)	159
BstF5I	GGATG	2 cut(s)	256, 574
BstKTI	GATC	3 cut(s)	384, 633, 681
BstMAI	GTCTC	2 cut(s)	322, 597
BstMBI	GATC	3 cut(s)	381, 630, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	159
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	436, 538, 741
BstX2I	RGATCY	1 cut(s)	630
BstYI	RGATCY	1 cut(s)	630
BtgI	CCRYGG	2 cut(s)	574, 661
BtsCI	GGATG	2 cut(s)	256, 574
BtsIMutI	CAGTG	2 cut(s)	301, 613
Cac8I	GCNNGC	1 cut(s)	225
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	72
CviAII	CATG	3 cut(s)	379, 662, 726
CviQI	GTAC	1 cut(s)	72
DdeI	CTNAG	3 cut(s)	132, 210, 696
DpnI	GATC	3 cut(s)	383, 632, 680
DpnII	GATC	3 cut(s)	381, 630, 678
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Ecl136II	GAGCTC	1 cut(s)	743
Eco130I	CCWWGG	1 cut(s)	661
Eco24I	GRGCYC	2 cut(s)	258, 745
Eco53kI	GAGCTC	1 cut(s)	743
Eco57I	CTGAAG	2 cut(s)	216, 483
Eco88I	CYCGRG	1 cut(s)	744
Eco91I	GGTNACC	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	743
EcoO65I	GGTNACC	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	623
EcoT14I	CCWWGG	1 cut(s)	661
EcoT38I	GRGCYC	2 cut(s)	258, 745
ErhI	CCWWGG	1 cut(s)	661
FaeI	CATG	3 cut(s)	382, 665, 729
FaiI	YATR	6 cut(s)	156, 380, 401, 663, 702, 727
FalI	AAGNNNNNCTT	2 cut(s)	328, 360
FatI	CATG	3 cut(s)	378, 661, 725
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	4 cut(s)	15, 450, 527, 730
FokI	GGATG	2 cut(s)	263, 581
FriOI	GRGCYC	2 cut(s)	258, 745
Fsp4HI	GCNGC	4 cut(s)	15, 450, 527, 730
FspBI	CTAG	2 cut(s)	246, 690
GluI	GCNGC	4 cut(s)	15, 450, 527, 730
GsuI	CTGGAG	1 cut(s)	669
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	3 cut(s)	382, 665, 729
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	262, 502
Hpy188III	TCNNGA	3 cut(s)	107, 209, 628
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	130, 732
HpyCH4III	ACNGT	4 cut(s)	37, 296, 312, 608
HpyCH4V	TGCA	2 cut(s)	452, 729
HpyF10VI	GCNNNNNNNGC	1 cut(s)	726
HpyF3I	CTNAG	3 cut(s)	132, 210, 696
Hsp92II	CATG	3 cut(s)	382, 665, 729
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	381, 630, 678
LmnI	GCTCC	2 cut(s)	11, 593
LpnPI	CCDG	9 cut(s)	144, 204, 222, 231, 237, 402, 610, 613, 699
Lsp1109I	GCAGC	3 cut(s)	436, 538, 741
MaeI	CTAG	2 cut(s)	246, 690
MaeIII	GTNAC	7 cut(s)	125, 159, 213, 296, 306, 412, 638
MalI	GATC	3 cut(s)	383, 632, 680
MboI	GATC	3 cut(s)	381, 630, 678
MboII	GAAGA	7 cut(s)	53, 182, 209, 368, 557, 569, 688
MflI	RGATCY	1 cut(s)	630
MhlI	GDGCHC	3 cut(s)	258, 722, 745
MluCI	AATT	2 cut(s)	184, 623
MnlI	CCTC	7 cut(s)	39, 216, 354, 496, 529, 532, 559
MroXI	GAANNNNTTC	1 cut(s)	656
MseI	TTAA	2 cut(s)	237, 751
MspA1I	CMGCKG	1 cut(s)	194
MwoI	GCNNNNNNNGC	1 cut(s)	726
NcoI	CCATGG	1 cut(s)	661
NdeII	GATC	3 cut(s)	381, 630, 678
NlaIII	CATG	3 cut(s)	382, 665, 729
NlaIV	GGNNCC	2 cut(s)	595, 659
NmuCI	GTSAC	4 cut(s)	125, 296, 412, 638
PaeR7I	CTCGAG	1 cut(s)	744
PdmI	GAANNNNTTC	1 cut(s)	656
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	4 cut(s)	16, 451, 528, 731
Psp124BI	GAGCTC	1 cut(s)	745
PspEI	GGTNACC	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	595, 659
PspXI	VCTCGAGB	1 cut(s)	744
PsuI	RGATCY	1 cut(s)	630
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	73
RsaNI	GTAC	1 cut(s)	72
SacI	GAGCTC	1 cut(s)	745
SaqAI	TTAA	2 cut(s)	237, 751
SatI	GCNGC	4 cut(s)	15, 450, 527, 730
Sau3AI	GATC	3 cut(s)	381, 630, 678
SduI	GDGCHC	3 cut(s)	258, 722, 745
Sfr274I	CTCGAG	1 cut(s)	744
SlaI	CTCGAG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	334, 744
SmoI	CTYRAG	2 cut(s)	334, 744
Sse9I	AATT	2 cut(s)	184, 623
SspMI	CTAG	2 cut(s)	246, 690
SstI	GAGCTC	1 cut(s)	745
StyI	CCWWGG	1 cut(s)	661
TaaI	ACNGT	4 cut(s)	37, 296, 312, 608
TaqI	TCGA	3 cut(s)	31, 39, 745
TasI	AATT	2 cut(s)	184, 623
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	237, 751
Tru9I	TTAA	2 cut(s)	237, 751
TscAI	CASTG	2 cut(s)	301, 613
TseFI	GTSAC	4 cut(s)	125, 296, 412, 638
TseI	GCWGC	4 cut(s)	14, 449, 526, 729
Tsp45I	GTSAC	4 cut(s)	125, 296, 412, 638
TspDTI	ATGAA	4 cut(s)	183, 570, 636, 714
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	2 cut(s)	301, 613
Van91I	CCANNNNNTGG	1 cut(s)	230
XapI	RAATTY	2 cut(s)	184, 623
XhoI	CTCGAG	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	656
XspI	CTAG	2 cut(s)	246, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.