Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

5492561 .. 5496424

Gene Structure 3864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1069100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGACGGCGGTGCTCCGTACAACCCGCGCACGGTGGAGGAGGTCTTCAGAGACTTCAAAGGGCGGAGGGCCGGCATGATTAAAGCTCTCACCACCGAGGTAGAAGACTTTTTTCAGCAGTGCGACCCTGAGAAGGAAAATCTTTGCCTTTATGGATTCCCAAGTGAGCAGTGGGAAGTTAATTTGCCTGCGGAGGAAGTTCCTCCAGAGCTTCCGGAGCCAGCACTTGGTATCAACTTTGCGAGAGATGGGATGCAAGAAAAGGATTGGTTATCCTTGGTTGCTGTCCATAGTGACGCATGGTTGCTTGCAGTGGCATTTTATTTCGGTGCGAGGTTTGGATTTGATAAGGCTGATAGGAAACGCCTTTTTAATATGATAAATGAACTTCCAACAATATTCGAGGTTGTGACAGGGACAGCCAAGAAACAAGTGAAGGAGAAGTCATCAAATTCAAATCATGGCAGCAACAGATCTAAGTCAAACTCTAAGCGAGGTTCTGAGCCTCAACCCAGGTATTCAAAGGCATTGCAGTCAAAGGATGCGGAGGAGAACGAGGAAGAAGGTTTGGAAGATGAAGACGAGGATGAGCACGGCGAGACACTGTGTGGGGCTTGTGGAGAAAACTACGCATCTGATGAATTTTGGATTTGCTGTGACATTTGCGAGAAGTGGTTCCACGGTAAGTGTGTCAAGATCACCCCAGCAAGAGCCGAGCATATCAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAGCCAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

257

Amino Acids

29.07

Weight (kDa)

5.11

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	1.7e-68	Alfin
PHD	PF00628	203 - 249	5.3e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	5 cut(s)	9, 26, 64, 191, 545
AcsI	RAATTY	2 cut(s)	451, 641
AcuI	CTGAAG	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	608
AfaI	GTAC	2 cut(s)	20, 731
AfiI	CCNNNNNNNGG	3 cut(s)	31, 133, 227
AgsI	TTSAA	3 cut(s)	58, 456, 522
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	2 cut(s)	86, 211
AluI	AGCT	2 cut(s)	86, 211
Alw21I	GWGCWC	2 cut(s)	16, 594
Alw26I	GTCTC	2 cut(s)	45, 593
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	465, 747
ApoI	RAATTY	2 cut(s)	451, 641
Asp700I	GAANNNNTTC	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	82, 691
BbsI	GAAGAC	3 cut(s)	37, 111, 585
Bbv12I	GWGCWC	2 cut(s)	16, 594
BbvI	GCAGC	2 cut(s)	477, 759
BccI	CCATC	2 cut(s)	242, 748
BceAI	ACGGC	2 cut(s)	22, 610
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	45, 593
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	2 cut(s)	466, 748
BlsI	GCNGC	2 cut(s)	467, 749
Bme1390I	CCNGG	1 cut(s)	514
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	2 cut(s)	219, 677
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	3 cut(s)	243, 532, 641
BpiI	GAAGAC	3 cut(s)	37, 111, 585
BpmI	CTGGAG	1 cut(s)	189
BsaJI	CCNNGG	4 cut(s)	96, 276, 512, 679
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 133, 227
Bse118I	RCCGGY	1 cut(s)	71
Bse3DI	GCAATG	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	4 cut(s)	96, 276, 512, 679
BseGI	GGATG	3 cut(s)	258, 547, 592
BseLI	CCNNNNNNNGG	3 cut(s)	31, 133, 227
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	2 cut(s)	120, 492
BseRI	GAGGAG	2 cut(s)	53, 563
BseXI	GCAGC	2 cut(s)	477, 759
BseYI	CCCAGC	1 cut(s)	703
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	71
BsiHKAI	GWGCWC	2 cut(s)	16, 594
BsiSI	CCGG	2 cut(s)	72, 215
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	31, 133, 227
BsmAI	GTCTC	2 cut(s)	45, 593
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	1 cut(s)	71
Bsp1286I	GDGCHC	2 cut(s)	16, 594
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	473, 696
BspACI	CCGC	5 cut(s)	9, 26, 64, 191, 545
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	2 cut(s)	121, 493
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	219, 677
BsrDI	GCAATG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	96, 276, 512, 679
BssMI	GATC	2 cut(s)	473, 696
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	3 cut(s)	34, 606, 683
BstC8I	GCNNGC	4 cut(s)	73, 189, 222, 309
BstDEI	CTNAG	4 cut(s)	129, 477, 489, 501
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	3 cut(s)	258, 547, 592
BstFNI	CGCG	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	476, 699
BstMAI	GTCTC	2 cut(s)	45, 593
BstMBI	GATC	2 cut(s)	473, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 724, 744
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	512
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	477, 759
BstV2I	GAAGAC	3 cut(s)	37, 111, 585
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	3 cut(s)	258, 547, 592
BtsI	GCAGTG	3 cut(s)	125, 176, 318
BtsIMutI	CAGTG	4 cut(s)	125, 176, 318, 602
Cac8I	GCNNGC	4 cut(s)	73, 189, 222, 309
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	69
CseI	GACGC	1 cut(s)	305
Csp6I	GTAC	2 cut(s)	19, 730
CviAII	CATG	3 cut(s)	76, 300, 461
CviQI	GTAC	2 cut(s)	19, 730
DdeI	CTNAG	4 cut(s)	129, 477, 489, 501
DpnI	GATC	2 cut(s)	475, 698
DpnII	GATC	2 cut(s)	473, 696
DraIII	CACNNNGTG	1 cut(s)	608
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	276
Eco57I	CTGAAG	1 cut(s)	31
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	79, 303, 464
FaiI	YATR	7 cut(s)	77, 153, 291, 301, 377, 462, 720
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	3 cut(s)	75, 299, 460
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	466, 748
FokI	GGATG	3 cut(s)	265, 554, 599
Fsp4HI	GCNGC	2 cut(s)	466, 748
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	466, 748
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	71
HapII	CCGG	2 cut(s)	72, 215
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	3 cut(s)	79, 303, 464
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	2 cut(s)	72, 215
HphI	GGTGA	2 cut(s)	82, 691
Hpy188I	TCNGA	3 cut(s)	50, 502, 637
Hpy188III	TCNNGA	3 cut(s)	206, 215, 694
HpyAV	CCTTC	3 cut(s)	127, 430, 557
HpyCH4III	ACNGT	3 cut(s)	34, 606, 683
HpyCH4V	TGCA	4 cut(s)	256, 311, 532, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 724, 744
HpyF3I	CTNAG	4 cut(s)	129, 477, 489, 501
Hsp92II	CATG	3 cut(s)	79, 303, 464
HspAI	GCGC	1 cut(s)	28
Kpn2I	TCCGGA	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	473, 696
LmnI	GCTCC	2 cut(s)	19, 217
Lsp1109I	GCAGC	2 cut(s)	477, 759
LweI	GCATC	3 cut(s)	243, 532, 641
MaeIII	GTNAC	3 cut(s)	293, 409, 656
MalI	GATC	2 cut(s)	475, 698
MboI	GATC	2 cut(s)	473, 696
MboII	GAAGA	5 cut(s)	37, 116, 572, 584, 590
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	16, 594
MluCI	AATT	3 cut(s)	181, 451, 641
MmeI	TCCRAC	1 cut(s)	416
MroI	TCCGGA	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	674
MseI	TTAA	3 cut(s)	81, 180, 372
MspI	CCGG	2 cut(s)	72, 215
MspR9I	CCNGG	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	217, 724, 744
NaeI	GCCGGC	1 cut(s)	73
NdeII	GATC	2 cut(s)	473, 696
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	3 cut(s)	79, 303, 464
NlaIV	GGNNCC	2 cut(s)	219, 677
NmeAIII	GCCGAG	1 cut(s)	739
NmuCI	GTSAC	3 cut(s)	293, 409, 656
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	674
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	2 cut(s)	467, 749
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	703
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	2 cut(s)	219, 677
PspPI	GGNCC	1 cut(s)	69
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	2 cut(s)	20, 731
RsaNI	GTAC	2 cut(s)	19, 730
SaqAI	TTAA	3 cut(s)	81, 180, 372
SatI	GCNGC	2 cut(s)	466, 748
Sau3AI	GATC	2 cut(s)	473, 696
Sau96I	GGNCC	1 cut(s)	69
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	2 cut(s)	16, 594
SetI	ASST	9 cut(s)	45, 88, 102, 213, 338, 408, 499, 518, 568
SfaNI	GCATC	3 cut(s)	243, 532, 641
Sse9I	AATT	3 cut(s)	181, 451, 641
SsiI	CCGC	5 cut(s)	9, 26, 64, 191, 545
SspI	AATATT	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	34, 606, 683
TaqI	TCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	181, 451, 641
TatI	WGTACW	1 cut(s)	729
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	3 cut(s)	81, 180, 372
Tru9I	TTAA	3 cut(s)	81, 180, 372
TscAI	CASTG	4 cut(s)	125, 176, 318, 609
TseFI	GTSAC	3 cut(s)	293, 409, 656
TseI	GCWGC	2 cut(s)	465, 747
Tsp45I	GTSAC	3 cut(s)	293, 409, 656
TspDTI	ATGAA	3 cut(s)	399, 591, 654
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	4 cut(s)	125, 176, 318, 609
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	451, 641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.