Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

3622986 .. 3626237

Gene Structure 3252 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1052900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGACGGCGGTGCTCCGTACAACCCGCGCACGGTGGAGGAGGTCTTCAGAGACTTCAAAGGGCGGAGGGCCGGCATGATTAAAGCTCTCACCACCGAGGTCGAAGACTTTTTTCAGCAGTGTGACCCTGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGCGAGCAGTGGGAGGTTAATTTGCCTGCGGAGGAGGTTCCCCCAGAGCTTCCGGAGCCAGCGCTTGGTATCAACTTTGCGAGAGATGGGATGCAAGAAAAGGACTGGTTATCCTTGGTTGCTGTCCACAGTGACGCGTGGTTGCTTGCAGTGGCATTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGCCTTTTTAATATGATAAATGAACTTCCAACAATATTCGAGGTTGTGACAGGGACAGCCAAGAAACAAGTGAAGGAGAAGTCATCAAATTCAAATCATGGCAGCAACAGATCTAAGTCAAACTCTAAGCGAGGTTCTGAGCCTCAACCCAGGCATTCAAAGGCATTGCAATCAAAGGACGCGGAGGAGGACGAGGAAGAAGGTGTGGAAGATGAAGAAGAGGATGAGGATGAGCATGGGGAGACACTGTGTGGGGCCTGTGGAGAGAACTACGCAGCTGATGAGTTTTGGATTTGCTGCGATATCTGCGAGAAGTGGTTCCATGGTAAGTGTGTCAAGATCACACCAGCAAGAGCCGAGCATATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAGCCAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

259

Amino Acids

29.28

Weight (kDa)

5.01

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	11 - 138	1.7e-68	Alfin
PHD	PF00628	205 - 251	3.2e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccII	CGCG	3 cut(s)	28, 299, 545
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	5 cut(s)	9, 26, 64, 191, 545
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	2 cut(s)	20, 737
AfeI	AGCGCT	1 cut(s)	225
AfiI	CCNNNNNNNGG	3 cut(s)	31, 133, 227
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	58, 456, 522
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	3 cut(s)	86, 211, 641
AluI	AGCT	3 cut(s)	86, 211, 641
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	45, 599
Aor13HI	TCCGGA	1 cut(s)	214
Aor51HI	AGCGCT	1 cut(s)	225
AoxI	GGCC	2 cut(s)	69, 618
ApeKI	GCWGC	4 cut(s)	465, 638, 660, 753
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	2 cut(s)	30, 226
AspS9I	GGNCC	2 cut(s)	69, 618
AsuHPI	GGTGA	1 cut(s)	82
BbsI	GAAGAC	2 cut(s)	37, 111
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	4 cut(s)	477, 647, 650, 765
BccI	CCATC	2 cut(s)	242, 754
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	45, 599
BfaI	CTAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	227
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	4 cut(s)	466, 639, 661, 754
BlsI	GCNGC	4 cut(s)	467, 640, 662, 755
Bme1390I	CCNGG	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	69, 618
BmiI	GGNNCC	4 cut(s)	201, 219, 619, 683
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	1 cut(s)	243
BpiI	GAAGAC	2 cut(s)	37, 111
BsaJI	CCNNGG	4 cut(s)	96, 276, 512, 685
BsaWI	WCCGGW	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	596, 626
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 133, 227
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	527
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	4 cut(s)	96, 276, 512, 685
BseGI	GGATG	3 cut(s)	258, 592, 598
BseLI	CCNNNNNNNGG	3 cut(s)	31, 133, 227
BseMI	GCAATG	1 cut(s)	527
BseMII	CTCAG	2 cut(s)	120, 492
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	3 cut(s)	53, 209, 563
BseXI	GCAGC	4 cut(s)	477, 647, 650, 765
Bsh1236I	CGCG	3 cut(s)	28, 299, 545
BshFI	GGCC	2 cut(s)	71, 620
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	72, 215
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	31, 133, 227
BsmAI	GTCTC	2 cut(s)	45, 599
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	71, 620
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	473, 702
Bsp19I	CCATGG	1 cut(s)	685
BspACI	CCGC	5 cut(s)	9, 26, 64, 191, 545
BspANI	GGCC	2 cut(s)	71, 620
BspCNI	CTCAG	2 cut(s)	121, 493
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	3 cut(s)	28, 299, 545
BspLI	GGNNCC	4 cut(s)	201, 219, 619, 683
BsrDI	GCAATG	1 cut(s)	527
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	272
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	4 cut(s)	96, 276, 512, 685
BssMI	GATC	2 cut(s)	473, 702
BssT1I	CCWWGG	2 cut(s)	276, 685
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	3 cut(s)	34, 293, 612
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	5 cut(s)	73, 167, 189, 222, 309
BstDEI	CTNAG	4 cut(s)	129, 477, 489, 501
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	3 cut(s)	258, 592, 598
BstFNI	CGCG	3 cut(s)	28, 299, 545
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	30, 226
BstKTI	GATC	2 cut(s)	476, 705
BstMAI	GTCTC	2 cut(s)	45, 599
BstMBI	GATC	2 cut(s)	473, 702
BstMWI	GCNNNNNNNGC	4 cut(s)	217, 669, 730, 750
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	1 cut(s)	512
BstUI	CGCG	3 cut(s)	28, 299, 545
BstV1I	GCAGC	4 cut(s)	477, 647, 650, 765
BstV2I	GAAGAC	2 cut(s)	37, 111
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BsuRI	GGCC	2 cut(s)	71, 620
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	3 cut(s)	258, 592, 598
BtsI	GCAGTG	3 cut(s)	125, 176, 318
BtsIMutI	CAGTG	5 cut(s)	125, 176, 298, 318, 608
Cac8I	GCNNGC	5 cut(s)	73, 167, 189, 222, 309
CfoI	GCGC	2 cut(s)	30, 226
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	69, 618
CseI	GACGC	2 cut(s)	305, 551
Csp6I	GTAC	2 cut(s)	19, 736
CviAII	CATG	4 cut(s)	76, 461, 599, 686
CviQI	GTAC	2 cut(s)	19, 736
DdeI	CTNAG	4 cut(s)	129, 477, 489, 501
DpnI	GATC	2 cut(s)	475, 704
DpnII	GATC	2 cut(s)	473, 702
DraIII	CACNNNGTG	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	79
Eco130I	CCWWGG	2 cut(s)	276, 685
Eco32I	GATATC	1 cut(s)	667
Eco47III	AGCGCT	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	618
EcoRII	CCWGG	1 cut(s)	512
EcoRV	GATATC	1 cut(s)	667
EcoT14I	CCWWGG	2 cut(s)	276, 685
ErhI	CCWWGG	2 cut(s)	276, 685
FaeI	CATG	4 cut(s)	79, 464, 602, 689
FaiI	YATR	7 cut(s)	77, 153, 377, 462, 600, 687, 726
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	75, 460, 598, 685
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	4 cut(s)	466, 639, 661, 754
FokI	GGATG	3 cut(s)	265, 599, 605
Fsp4HI	GCNGC	4 cut(s)	466, 639, 661, 754
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	2 cut(s)	29, 225
GluI	GCNGC	4 cut(s)	466, 639, 661, 754
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	2 cut(s)	71, 620
HapII	CCGG	2 cut(s)	72, 215
HgaI	GACGC	2 cut(s)	305, 551
HhaI	GCGC	2 cut(s)	30, 226
Hin1II	CATG	4 cut(s)	79, 464, 602, 689
Hin6I	GCGC	2 cut(s)	28, 224
HinP1I	GCGC	2 cut(s)	28, 224
HpaII	CCGG	2 cut(s)	72, 215
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	50, 502
Hpy188III	TCNNGA	2 cut(s)	215, 700
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	127, 430, 557
HpyCH4III	ACNGT	3 cut(s)	34, 293, 612
HpyCH4V	TGCA	4 cut(s)	256, 311, 532, 753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	217, 669, 730, 750
HpyF3I	CTNAG	4 cut(s)	129, 477, 489, 501
Hsp92II	CATG	4 cut(s)	79, 464, 602, 689
HspAI	GCGC	2 cut(s)	28, 224
Kpn2I	TCCGGA	1 cut(s)	214
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	473, 702
LmnI	GCTCC	2 cut(s)	19, 217
Lsp1109I	GCAGC	4 cut(s)	477, 647, 650, 765
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	122, 293, 409
MalI	GATC	2 cut(s)	475, 704
MboI	GATC	2 cut(s)	473, 702
MboII	GAAGA	6 cut(s)	37, 116, 572, 584, 590, 593
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	181, 451
MluI	ACGCGT	1 cut(s)	297
MmeI	TCCRAC	1 cut(s)	416
MroI	TCCGGA	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	71
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	4 cut(s)	81, 180, 372, 729
MspA1I	CMGCKG	1 cut(s)	641
MspI	CCGG	2 cut(s)	72, 215
MspR9I	CCNGG	1 cut(s)	514
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	3 cut(s)	28, 299, 545
MwoI	GCNNNNNNNGC	4 cut(s)	217, 669, 730, 750
NaeI	GCCGGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	685
NdeII	GATC	2 cut(s)	473, 702
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	4 cut(s)	79, 464, 602, 689
NlaIV	GGNNCC	4 cut(s)	201, 219, 619, 683
NmeAIII	GCCGAG	1 cut(s)	745
NmuCI	GTSAC	3 cut(s)	122, 293, 409
PctI	GAATGC	1 cut(s)	517
PdiI	GCCGGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	4 cut(s)	467, 640, 662, 755
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	4 cut(s)	201, 219, 619, 683
PspPI	GGNCC	2 cut(s)	69, 618
PsuI	RGATCY	1 cut(s)	473
PvuII	CAGCTG	1 cut(s)	641
RsaI	GTAC	2 cut(s)	20, 737
RsaNI	GTAC	2 cut(s)	19, 736
SaqAI	TTAA	4 cut(s)	81, 180, 372, 729
SatI	GCNGC	4 cut(s)	466, 639, 661, 754
Sau3AI	GATC	2 cut(s)	473, 702
Sau96I	GGNCC	2 cut(s)	69, 618
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	243
Sse9I	AATT	2 cut(s)	181, 451
SsiI	CCGC	5 cut(s)	9, 26, 64, 191, 545
SspI	AATATT	1 cut(s)	399
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	2 cut(s)	276, 685
TaaI	ACNGT	3 cut(s)	34, 293, 612
TaqI	TCGA	2 cut(s)	102, 402
TasI	AATT	2 cut(s)	181, 451
TatI	WGTACW	1 cut(s)	735
Tru1I	TTAA	4 cut(s)	81, 180, 372, 729
Tru9I	TTAA	4 cut(s)	81, 180, 372, 729
TscAI	CASTG	5 cut(s)	125, 176, 298, 318, 615
TseFI	GTSAC	3 cut(s)	122, 293, 409
TseI	GCWGC	4 cut(s)	465, 638, 660, 753
Tsp45I	GTSAC	3 cut(s)	122, 293, 409
TspDTI	ATGAA	2 cut(s)	399, 591
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	5 cut(s)	125, 176, 298, 318, 615
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.