Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

3128526 .. 3132499

Gene Structure 3974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G044000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGGGAGCTGATGCCGCACTCTACAATCCTCGCACAGTCGAGGAGGTTTTCAGAGATTTTAAGGGCCGCAGAGCTGGCATGATCAAGGCTCTCACTTCTGATGTTGAAAAGTTCTTTCAGATGTGCGATCCTGAGAAGGAGAATCTTTCCTTATATGGATATCCTAGTGAGCAATGGGAAGTCAACCTACCTGCTGAAGAAGTGCCTCCAGAACTGCCAGAGCCTGCACTTGGTATCAACTTTGCAAGAGATGGTATGCAAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCATAGCGATGCATGGCTAGTTTCTGTTGCCTTCTACTTTGGTGCCAGATTTGGGTTCGATAAGGCTGATAGGAAGCGACTTTTTAACATGATTAATGAACTTCCAACAATATTTGAAGTTGTGACTGGTACTGCTAAAAAACAAGTAAAAGAGAAGTCATCTTCAAATCATGGTAGCAACAAATCCAAGTCGAACTCCAAAGCGCAGCGAGGATCAGAATCTCAGGGAAGACATTCAGAAGTGGTGCAGCCAAAGGACGAAGACGAGGGCTTGGACGAAGAGGAGGAAGATGAACGTGAAGAGACATGCGGGGCATGTGGTGGAGGCGGCCCATCCTCATTAGATGAACCCTGGATTTTTTGTGACTTCTGTGAGACATGGTTCCATATGAAGTGCGTGAAGATAACCCCCGCAAGAGCAAAACAGATTAAGCAGTACAAATGCCCTTCATGCAACAACAAGAGAGCTAGGCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

258

Amino Acids

29.02

Weight (kDa)

5.28

Isoelectric Point (pI)

48.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	335
AciI	CCGC	5 cut(s)	18, 70, 603, 621, 705
AclWI	GGATC	2 cut(s)	125, 514
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	424, 731
AfiI	CCNNNNNNNGG	2 cut(s)	233, 345
AgsI	TTSAA	3 cut(s)	110, 410, 459
AjnI	CCWGG	1 cut(s)	644
AluBI	AGCT	3 cut(s)	11, 77, 761
AluI	AGCT	3 cut(s)	11, 77, 761
Alw26I	GTCTC	2 cut(s)	590, 662
AlwI	GGATC	2 cut(s)	125, 514
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	67, 622, 764
ApeKI	GCWGC	2 cut(s)	499, 541
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	499
AspS9I	GGNCC	2 cut(s)	67, 623
BanI	GGYRCC	1 cut(s)	335
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BbsI	GAAGAC	2 cut(s)	529, 561
BbvI	GCAGC	2 cut(s)	511, 553
BccI	CCATC	2 cut(s)	248, 634
BciT130I	CCWGG	1 cut(s)	646
BclI	TGATCA	1 cut(s)	84
BcoDI	GTCTC	2 cut(s)	590, 662
BfaI	CTAG	3 cut(s)	168, 311, 762
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	18, 70, 500, 542, 622
BlsI	GCNGC	5 cut(s)	19, 71, 501, 543, 623
Bme1390I	CCNGG	1 cut(s)	646
BmgT120I	GGNCC	2 cut(s)	67, 623
BmiI	GGNNCC	2 cut(s)	337, 677
BmrFI	CCNGG	1 cut(s)	646
BmsI	GCATC	2 cut(s)	4, 292
BpiI	GAAGAC	2 cut(s)	529, 561
BpmI	CTGGAG	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	644
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 345
Bse1I	ACTGG	2 cut(s)	278, 424
Bse3DI	GCAATG	1 cut(s)	182
Bse8I	GATNNNNATC	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	644
BseGI	GGATG	1 cut(s)	626
BseJI	GATNNNNATC	1 cut(s)	511
BseLI	CCNNNNNNNGG	2 cut(s)	233, 345
BseMI	GCAATG	1 cut(s)	182
BseMII	CTCAG	2 cut(s)	126, 530
BseNI	ACTGG	2 cut(s)	278, 424
BseRI	GAGGAG	2 cut(s)	59, 590
BseXI	GCAGC	2 cut(s)	511, 553
BsgI	GTGCAG	2 cut(s)	213, 560
BshFI	GGCC	3 cut(s)	69, 624, 766
BshNI	GGYRCC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	233, 345
BsmAI	GTCTC	2 cut(s)	590, 662
BsnI	GGCC	3 cut(s)	69, 624, 766
Bsp143I	GATC	3 cut(s)	84, 130, 506
BspACI	CCGC	5 cut(s)	18, 70, 603, 621, 705
BspANI	GGCC	3 cut(s)	69, 624, 766
BspCNI	CTCAG	2 cut(s)	127, 529
BspLI	GGNNCC	2 cut(s)	337, 677
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	2 cut(s)	125, 514
BspT107I	GGYRCC	1 cut(s)	335
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	278, 424
BssECI	CCNNGG	1 cut(s)	644
BssMI	GATC	3 cut(s)	84, 130, 506
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	567, 588
BstC8I	GCNNGC	2 cut(s)	79, 228
BstDEI	CTNAG	2 cut(s)	135, 516
BstF5I	GGATG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	499
BstKTI	GATC	3 cut(s)	87, 133, 509
BstMAI	GTCTC	2 cut(s)	590, 662
BstMBI	GATC	3 cut(s)	84, 130, 506
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 78, 744
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	2 cut(s)	603, 612
BstSCI	CCNGG	1 cut(s)	644
BstV1I	GCAGC	2 cut(s)	511, 553
BstV2I	GAAGAC	2 cut(s)	529, 561
BsuRI	GGCC	3 cut(s)	69, 624, 766
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	2 cut(s)	79, 228
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	499
Cfr13I	GGNCC	2 cut(s)	67, 623
Csp6I	GTAC	2 cut(s)	423, 730
CviAII	CATG	8 cut(s)	82, 306, 382, 464, 600, 609, 672, 744
CviQI	GTAC	2 cut(s)	423, 730
DdeI	CTNAG	2 cut(s)	135, 516
DpnI	GATC	3 cut(s)	86, 132, 508
DpnII	GATC	3 cut(s)	84, 130, 506
Eam1104I	CTCTTC	2 cut(s)	567, 588
EarI	CTCTTC	2 cut(s)	567, 588
Eco147I	AGGCCT	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	164
EcoT22I	ATGCAT	1 cut(s)	307
FaeI	CATG	8 cut(s)	85, 309, 385, 467, 603, 612, 675, 747
FatI	CATG	8 cut(s)	81, 305, 381, 463, 599, 608, 671, 743
FauI	CCCGC	2 cut(s)	596, 712
FauNDI	CATATG	1 cut(s)	681
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	18, 70, 500, 542, 622
FokI	GGATG	1 cut(s)	613
Fsp4HI	GCNGC	5 cut(s)	18, 70, 500, 542, 622
FspBI	CTAG	3 cut(s)	168, 311, 762
GlaI	GCGC	1 cut(s)	498
GluI	GCNGC	5 cut(s)	18, 70, 500, 542, 622
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	69, 624, 766
HhaI	GCGC	1 cut(s)	499
Hin1II	CATG	8 cut(s)	85, 309, 385, 467, 603, 612, 675, 747
Hin6I	GCGC	1 cut(s)	497
HinP1I	GCGC	1 cut(s)	497
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	145, 512
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	5 cut(s)	56, 103, 123, 511, 532
Hpy188III	TCNNGA	2 cut(s)	134, 212
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	133, 334, 750
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	6 cut(s)	230, 248, 262, 305, 541, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 78, 744
HpyF3I	CTNAG	2 cut(s)	135, 516
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	8 cut(s)	85, 309, 385, 467, 603, 612, 675, 747
HspAI	GCGC	1 cut(s)	497
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	3 cut(s)	84, 130, 506
LmnI	GCTCC	1 cut(s)	8
Lsp1109I	GCAGC	2 cut(s)	511, 553
LweI	GCATC	2 cut(s)	4, 292
MaeI	CTAG	3 cut(s)	168, 311, 762
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	2 cut(s)	415, 656
MalI	GATC	3 cut(s)	86, 132, 508
MboI	GATC	3 cut(s)	84, 130, 506
MboII	GAAGA	8 cut(s)	212, 447, 534, 566, 584, 593, 605, 706
MmeI	TCCRAC	1 cut(s)	422
Mph1103I	ATGCAT	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	526
MseI	TTAA	5 cut(s)	63, 378, 387, 723, 772
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	3 cut(s)	17, 78, 744
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	3 cut(s)	84, 130, 506
NlaIII	CATG	8 cut(s)	85, 309, 385, 467, 603, 612, 675, 747
NlaIV	GGNNCC	2 cut(s)	337, 677
NmuCI	GTSAC	2 cut(s)	415, 656
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	2 cut(s)	603, 612
PceI	AGGCCT	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	526
PfeI	GAWTC	2 cut(s)	145, 512
PkrI	GCNGC	5 cut(s)	19, 71, 501, 543, 623
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	337, 677
PspPI	GGNCC	2 cut(s)	67, 623
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	424, 731
RsaNI	GTAC	2 cut(s)	423, 730
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	63, 378, 387, 723, 772
SatI	GCNGC	5 cut(s)	18, 70, 500, 542, 622
Sau3AI	GATC	3 cut(s)	84, 130, 506
Sau96I	GGNCC	2 cut(s)	67, 623
ScrFI	CCNGG	1 cut(s)	646
SetI	ASST	7 cut(s)	13, 51, 79, 192, 196, 592, 763
SfaNI	GCATC	2 cut(s)	4, 292
SmiMI	CAYNNNNRTG	1 cut(s)	300
SseBI	AGGCCT	1 cut(s)	766
SsiI	CCGC	5 cut(s)	18, 70, 603, 621, 705
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	3 cut(s)	168, 311, 762
StuI	AGGCCT	1 cut(s)	766
StyD4I	CCNGG	1 cut(s)	644
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	3 cut(s)	42, 351, 485
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	3 cut(s)	20, 72, 624
TfiI	GAWTC	2 cut(s)	145, 512
Tru1I	TTAA	5 cut(s)	63, 378, 387, 723, 772
Tru9I	TTAA	5 cut(s)	63, 378, 387, 723, 772
TseFI	GTSAC	2 cut(s)	415, 656
TseI	GCWGC	2 cut(s)	499, 541
Tsp45I	GTSAC	2 cut(s)	415, 656
TspDTI	ATGAA	7 cut(s)	17, 284, 405, 600, 654, 698, 732
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	2 cut(s)	603, 612
XmnI	GAANNNNTTC	1 cut(s)	526
XspI	CTAG	3 cut(s)	168, 311, 762
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.