Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

17623321 .. 17627716

Gene Structure 4396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1171200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAAGGGAGCTGATGCCGCGCTCTACAATCCTCGAACGGTCGAGGAGGTTTTCAGAGATTTCAAGGGCCGCAGATCTGGAATGATCAAGGCTCTCACTTCTGATGTTGAAAAATTCTTTCAGATGTGTGATCCTGAGAAGGAGAATCTCTCCTTGTATGGATATCCTAGTGAGCAGTGGGAAGTCAACCTACCTGCTGAAGAAGTGCCTCCTGAATTGCCAGAGCCTGCTCTGGGTATCAACTTTGCAAGAGATGGCATGGCAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCATAGTGATGCCTGGCTAGTTTCTGTTGCCTTCTACTTTGGTGCCAGATTTGGGTTTGACAAGGCTGACAGGAAGCGACTTTTTAATATGATTAATGAACTGCCAACAATATTTGAAGTTGTGACTGGTACTGCAAAAAAACAAGCAAAGGAGAAGTCATCTTCAAATCATGGCAGCAACAAATCCAAGTCAAACTCCAAAGCGCGAGGGTCCGAATCTCAAGGAAGACATTCGGAAGTATTGCAGCCTAAAGACGAAGATGAGGGCTTGGATGAAGAGGAGGAGGATGAACGTGAAGAGACATGTGGAGCATGTGGTGGAGGCGGACCATCCTCATTGGACGAACCCTGGATTTTCTGTGATTTTTGTGAGACGTGGTTCCACATGAAGTGCGTGAAGATGACCCCTGCACGAGCAAAACAGATCAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGAGCCCGGCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

257

Amino Acids

28.83

Weight (kDa)

5.28

Isoelectric Point (pI)

53.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	13 - 140	3.5e-67	Alfin
PHD	PF00628	200 - 248	2.1e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
AccB1I	GGYRCC	1 cut(s)	335
AccII	CGCG	2 cut(s)	20, 499
AciI	CCGC	3 cut(s)	18, 70, 618
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	113
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	424, 728
AfiI	CCNNNNNNNGG	2 cut(s)	233, 345
AflIII	ACRYGT	1 cut(s)	596
AgsI	TTSAA	4 cut(s)	64, 110, 410, 459
AjiI	CACGTC	1 cut(s)	669
AjnI	CCWGG	2 cut(s)	305, 641
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	587, 659
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	2 cut(s)	67, 761
ApeKI	GCWGC	3 cut(s)	468, 538, 744
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	523
AspLEI	GCGC	2 cut(s)	22, 499
AspS9I	GGNCC	3 cut(s)	67, 504, 620
AsuC2I	CCSGG	1 cut(s)	760
AvaII	GGWCC	2 cut(s)	504, 620
BanI	GGYRCC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	760
BarI	GAAGNNNNNNTAC	2 cut(s)	174, 206
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	1 cut(s)	526
BbvI	GCAGC	3 cut(s)	480, 550, 756
BccI	CCATC	2 cut(s)	248, 631
BciT130I	CCWGG	2 cut(s)	307, 643
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	587, 659
BfaI	CTAG	2 cut(s)	168, 311
BfuAI	ACCTGC	1 cut(s)	202
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	5 cut(s)	18, 70, 469, 539, 745
BlsI	GCNGC	5 cut(s)	19, 71, 470, 540, 746
Bme1390I	CCNGG	3 cut(s)	307, 643, 760
Bme18I	GGWCC	2 cut(s)	504, 620
BmgBI	CACGTC	1 cut(s)	669
BmgT120I	GGNCC	3 cut(s)	67, 504, 620
BmiI	GGNNCC	3 cut(s)	337, 505, 674
BmrFI	CCNGG	3 cut(s)	307, 643, 760
BmsI	GCATC	2 cut(s)	4, 292
BpiI	GAAGAC	1 cut(s)	526
BplI	GAGNNNNNCTC	2 cut(s)	134, 166
BpuEI	CTTGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	760
BsaJI	CCNNGG	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 345
Bse1I	ACTGG	2 cut(s)	278, 424
BseBI	CCWGG	2 cut(s)	307, 643
BseDI	CCNNGG	1 cut(s)	641
BseGI	GGATG	3 cut(s)	571, 586, 623
BseLI	CCNNNNNNNGG	2 cut(s)	233, 345
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	278, 424
BseRI	GAGGAG	3 cut(s)	59, 587, 590
BseXI	GCAGC	3 cut(s)	480, 550, 756
BsgI	GTGCAG	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	20, 499
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	2 cut(s)	69, 763
BshNI	GGYRCC	1 cut(s)	335
BsiEI	CGRYCG	1 cut(s)	42
BsiSI	CCGG	1 cut(s)	760
BslI	CCNNNNNNNGG	2 cut(s)	233, 345
BsmAI	GTCTC	2 cut(s)	587, 659
BsmBI	CGTCTC	1 cut(s)	659
BsnI	GGCC	2 cut(s)	69, 763
Bsp1286I	GDGCHC	1 cut(s)	760
Bsp143I	GATC	4 cut(s)	74, 84, 130, 717
BspACI	CCGC	3 cut(s)	18, 70, 618
BspANI	GGCC	2 cut(s)	69, 763
BspCNI	CTCAG	1 cut(s)	127
BspFNI	CGCG	2 cut(s)	20, 499
BspLI	GGNNCC	3 cut(s)	337, 505, 674
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	278, 424
BssECI	CCNNGG	1 cut(s)	641
BssMI	GATC	4 cut(s)	74, 84, 130, 717
BssSI	CACGAG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	307, 643
Bst4CI	ACNGT	1 cut(s)	40
Bst6I	CTCTTC	2 cut(s)	564, 585
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	1 cut(s)	135
BstF5I	GGATG	3 cut(s)	571, 586, 623
BstFNI	CGCG	2 cut(s)	20, 499
BstHHI	GCGC	2 cut(s)	22, 499
BstKTI	GATC	4 cut(s)	77, 87, 133, 720
BstMAI	GTCTC	2 cut(s)	587, 659
BstMBI	GATC	4 cut(s)	74, 84, 130, 717
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 741
BstNI	CCWGG	2 cut(s)	307, 643
BstNSI	RCATGY	2 cut(s)	600, 609
BstSCI	CCNGG	3 cut(s)	305, 641, 758
BstUI	CGCG	2 cut(s)	20, 499
BstV1I	GCAGC	3 cut(s)	480, 550, 756
BstV2I	GAAGAC	1 cut(s)	526
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	69, 763
BtrI	CACGTC	1 cut(s)	669
BtsCI	GGATG	3 cut(s)	571, 586, 623
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	1 cut(s)	182
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	1 cut(s)	228
CaiI	CAGNNNCTG	1 cut(s)	227
CfoI	GCGC	2 cut(s)	22, 499
Cfr13I	GGNCC	3 cut(s)	67, 504, 620
Csp6I	GTAC	2 cut(s)	423, 727
CviAII	CATG	6 cut(s)	259, 464, 597, 606, 679, 741
CviQI	GTAC	2 cut(s)	423, 727
DdeI	CTNAG	1 cut(s)	135
DpnI	GATC	4 cut(s)	76, 86, 132, 719
DpnII	GATC	4 cut(s)	74, 84, 130, 717
Eam1104I	CTCTTC	2 cut(s)	564, 585
EarI	CTCTTC	2 cut(s)	564, 585
EciI	GGCGGA	1 cut(s)	633
Eco24I	GRGCYC	1 cut(s)	760
Eco32I	GATATC	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	504, 620
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	305, 641
EcoRV	GATATC	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	760
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	6 cut(s)	262, 467, 600, 609, 682, 744
FaiI	YATR	9 cut(s)	159, 260, 297, 383, 465, 598, 607, 680, 742
FatI	CATG	6 cut(s)	258, 463, 596, 605, 678, 740
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	5 cut(s)	18, 70, 469, 539, 745
FokI	GGATG	3 cut(s)	578, 593, 610
FriOI	GRGCYC	1 cut(s)	760
Fsp4HI	GCNGC	5 cut(s)	18, 70, 469, 539, 745
FspBI	CTAG	2 cut(s)	168, 311
GlaI	GCGC	2 cut(s)	21, 498
GluI	GCNGC	5 cut(s)	18, 70, 469, 539, 745
HaeIII	GGCC	2 cut(s)	69, 763
HapII	CCGG	1 cut(s)	760
HhaI	GCGC	2 cut(s)	22, 499
Hin1II	CATG	6 cut(s)	262, 467, 600, 609, 682, 744
Hin6I	GCGC	2 cut(s)	20, 497
HinP1I	GCGC	2 cut(s)	20, 497
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	2 cut(s)	145, 509
HpaII	CCGG	1 cut(s)	760
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	5 cut(s)	56, 103, 123, 508, 529
Hpy188III	TCNNGA	3 cut(s)	78, 134, 212
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	3 cut(s)	133, 334, 747
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	2 cut(s)	586, 668
HpyCH4V	TGCA	5 cut(s)	248, 428, 538, 704, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 741
HpyF3I	CTNAG	1 cut(s)	135
HpySE526I	ACGT	2 cut(s)	586, 668
Hsp92II	CATG	6 cut(s)	262, 467, 600, 609, 682, 744
HspAI	GCGC	2 cut(s)	20, 497
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	74, 84, 130, 717
LmnI	GCTCC	2 cut(s)	8, 602
Lsp1109I	GCAGC	3 cut(s)	480, 550, 756
LweI	GCATC	2 cut(s)	4, 292
MaeI	CTAG	2 cut(s)	168, 311
MaeII	ACGT	2 cut(s)	586, 668
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	4 cut(s)	76, 86, 132, 719
MboI	GATC	4 cut(s)	74, 84, 130, 717
MboII	GAAGA	7 cut(s)	212, 447, 531, 563, 581, 602, 703
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	1 cut(s)	760
MluCI	AATT	2 cut(s)	113, 215
MroXI	GAANNNNTTC	1 cut(s)	523
MseI	TTAA	3 cut(s)	378, 387, 769
MslI	CAYNNNNRTG	1 cut(s)	300
MspI	CCGG	1 cut(s)	760
MspR9I	CCNGG	3 cut(s)	307, 643, 760
MvaI	CCWGG	2 cut(s)	307, 643
MvnI	CGCG	2 cut(s)	20, 499
MwoI	GCNNNNNNNGC	2 cut(s)	17, 741
NciI	CCSGG	1 cut(s)	760
NdeII	GATC	4 cut(s)	74, 84, 130, 717
NlaIII	CATG	6 cut(s)	262, 467, 600, 609, 682, 744
NlaIV	GGNNCC	3 cut(s)	337, 505, 674
NmuCI	GTSAC	1 cut(s)	415
NspI	RCATGY	2 cut(s)	600, 609
PciI	ACATGT	1 cut(s)	596
PdmI	GAANNNNTTC	1 cut(s)	523
PfeI	GAWTC	2 cut(s)	145, 509
PkrI	GCNGC	5 cut(s)	19, 71, 470, 540, 746
PscI	ACATGT	1 cut(s)	596
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	305, 641
PspGI	CCWGG	2 cut(s)	305, 641
PspN4I	GGNNCC	3 cut(s)	337, 505, 674
PspPI	GGNCC	3 cut(s)	67, 504, 620
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	2 cut(s)	424, 728
RsaNI	GTAC	2 cut(s)	423, 727
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	378, 387, 769
SatI	GCNGC	5 cut(s)	18, 70, 469, 539, 745
Sau3AI	GATC	4 cut(s)	74, 84, 130, 717
Sau96I	GGNCC	3 cut(s)	67, 504, 620
ScrFI	CCNGG	3 cut(s)	307, 643, 760
SduI	GDGCHC	1 cut(s)	760
SetI	ASST	6 cut(s)	13, 51, 192, 196, 589, 671
SfaNI	GCATC	2 cut(s)	4, 292
SinI	GGWCC	2 cut(s)	504, 620
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	513
SmoI	CTYRAG	1 cut(s)	513
Sse9I	AATT	2 cut(s)	113, 215
SsiI	CCGC	3 cut(s)	18, 70, 618
SspI	AATATT	1 cut(s)	405
SspMI	CTAG	2 cut(s)	168, 311
StyD4I	CCNGG	3 cut(s)	305, 641, 758
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	2 cut(s)	589, 671
TaqI	TCGA	2 cut(s)	34, 42
TasI	AATT	2 cut(s)	113, 215
TatI	WGTACW	1 cut(s)	726
TauI	GCSGC	2 cut(s)	20, 72
TfiI	GAWTC	2 cut(s)	145, 509
Tru1I	TTAA	3 cut(s)	378, 387, 769
Tru9I	TTAA	3 cut(s)	378, 387, 769
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	415
TseI	GCWGC	3 cut(s)	468, 538, 744
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	7 cut(s)	17, 284, 405, 582, 597, 695, 729
TspRI	CASTG	1 cut(s)	182
VpaK11BI	GGWCC	2 cut(s)	504, 620
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	1 cut(s)	113
XceI	RCATGY	2 cut(s)	600, 609
XmnI	GAANNNNTTC	1 cut(s)	523
XspI	CTAG	2 cut(s)	168, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.