Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

65205076 .. 65206313

Gene Structure 1238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21472

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAAGAAAAAGACTGGTTATCCTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGTAGTGGCCTTTTACTTCGGTGCTAGGTTTCAATTTGATAAAACTGATAGGAAACGCCTTTTTAATATGATAAATGAGCTTCCAACTATATTTGAGATTGTTACAGGGACAGCCAAGAAACAAGTAAAGGAGAGGTCAACAAATTCAAATCATGGCAGCAACAGACCTAAATCAAATTCGAAGAGAGGTTCTGAGTCTCAGGGAAAGTATGCAAAGGTAATGCAAGCAAGGGAAGACTATGAGGATGGCACAGAAGATGAAGATGAGGATGAGCATGGAGAGACACTATGTGGGTCTTGTGGAGAGAACTATGCATCTGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACCCCAGCAAGGGCCGAGCATATTAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGATCCCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

169

Amino Acids

19.44

Weight (kDa)

6.52

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	1 - 54	6.6e-22	Alfin
PHD	PF00628	116 - 162	5e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	3 cut(s)	199, 232, 380
AdeI	CACNNNGTG	1 cut(s)	347
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	447, 448
AgsI	TTSAA	2 cut(s)	89, 204
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	258, 332
AlwI	GGATC	1 cut(s)	492
AoxI	GGCC	2 cut(s)	63, 450
ApeKI	GCWGC	3 cut(s)	213, 393, 486
ApoI	RAATTY	3 cut(s)	199, 232, 380
Asp700I	GAANNNNTTC	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	430
AsuII	TTCGAA	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	3 cut(s)	225, 380, 498
BccI	CCATC	2 cut(s)	296, 487
BcoDI	GTCTC	2 cut(s)	258, 332
BfaI	CTAG	1 cut(s)	81
BisI	GCNGC	3 cut(s)	214, 394, 487
BlsI	GCNGC	3 cut(s)	215, 395, 488
BmgT120I	GGNCC	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	416
BmsI	GCATC	2 cut(s)	34, 380
BpiI	GAAGAC	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	24, 418
Bsc4I	CCNNNNNNNGG	2 cut(s)	447, 448
Bse1I	ACTGG	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	24, 418
BseGI	GGATG	2 cut(s)	307, 331
BseLI	CCNNNNNNNGG	2 cut(s)	447, 448
BseMII	CTCAG	2 cut(s)	240, 269
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	3 cut(s)	225, 380, 498
BseYI	CCCAGC	1 cut(s)	442
BshFI	GGCC	2 cut(s)	65, 452
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	2 cut(s)	447, 448
BsmAI	GTCTC	2 cut(s)	258, 332
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	65, 452
Bsp119I	TTCGAA	1 cut(s)	236
Bsp143I	GATC	2 cut(s)	435, 497
Bsp19I	CCATGG	1 cut(s)	418
BspANI	GGCC	2 cut(s)	65, 452
BspCNI	CTCAG	2 cut(s)	241, 268
BspLI	GGNNCC	1 cut(s)	416
BspPI	GGATC	1 cut(s)	492
BspT104I	TTCGAA	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	24, 418
BssMI	GATC	2 cut(s)	435, 497
BssT1I	CCWWGG	2 cut(s)	24, 418
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	2 cut(s)	249, 255
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	307, 331
BstKTI	GATC	2 cut(s)	438, 500
BstMAI	GTCTC	2 cut(s)	258, 332
BstMBI	GATC	2 cut(s)	435, 497
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstV1I	GCAGC	3 cut(s)	225, 380, 498
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	65, 452
BtgI	CCRYGG	1 cut(s)	418
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	307, 331
BtsIMutI	CAGTG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	450
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	4 cut(s)	48, 209, 332, 419
CviJI	RGCY	4 cut(s)	65, 136, 170, 452
CviKI_1	RGCY	4 cut(s)	65, 136, 170, 452
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	249, 255
DpnI	GATC	2 cut(s)	437, 499
DpnII	GATC	2 cut(s)	435, 497
DraIII	CACNNNGTG	1 cut(s)	347
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	24, 418
EcoT14I	CCWWGG	2 cut(s)	24, 418
EcoT22I	ATGCAT	2 cut(s)	49, 373
ErhI	CCWWGG	2 cut(s)	24, 418
FaeI	CATG	4 cut(s)	51, 212, 335, 422
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	4 cut(s)	47, 208, 331, 418
Fnu4HI	GCNGC	3 cut(s)	214, 394, 487
FokI	GGATG	2 cut(s)	314, 338
Fsp4HI	GCNGC	3 cut(s)	214, 394, 487
FspBI	CTAG	1 cut(s)	81
GluI	GCNGC	3 cut(s)	214, 394, 487
GsaI	CCCAGC	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	65, 452
Hin1II	CATG	4 cut(s)	51, 212, 335, 422
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	251
HphI	GGTGA	1 cut(s)	430
Hpy166II	GTNNAC	2 cut(s)	37, 195
Hpy188I	TCNGA	2 cut(s)	250, 376
Hpy188III	TCNNGA	1 cut(s)	501
Hpy8I	GTNNAC	2 cut(s)	37, 195
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	6 cut(s)	4, 47, 269, 280, 371, 486
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	249, 255
Hsp92II	CATG	4 cut(s)	51, 212, 335, 422
Kzo9I	GATC	2 cut(s)	435, 497
LpnPI	CCDG	3 cut(s)	147, 242, 456
Lsp1109I	GCAGC	3 cut(s)	225, 380, 498
LweI	GCATC	2 cut(s)	34, 380
MaeI	CTAG	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	51, 157
MalI	GATC	2 cut(s)	437, 499
MboI	GATC	2 cut(s)	435, 497
MboII	GAAGA	5 cut(s)	250, 302, 323, 329, 445
MflI	RGATCY	1 cut(s)	497
MluCI	AATT	4 cut(s)	89, 199, 232, 380
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	4 cut(s)	183, 236, 292, 316
Mph1103I	ATGCAT	2 cut(s)	49, 373
MroXI	GAANNNNTTC	1 cut(s)	413
MseI	TTAA	2 cut(s)	120, 462
MslI	CAYNNNNRTG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	463
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	2 cut(s)	435, 497
NlaIII	CATG	4 cut(s)	51, 212, 335, 422
NlaIV	GGNNCC	1 cut(s)	416
NmeAIII	GCCGAG	1 cut(s)	478
NsiI	ATGCAT	2 cut(s)	49, 373
NspV	TTCGAA	1 cut(s)	236
PdmI	GAANNNNTTC	1 cut(s)	413
PkrI	GCNGC	3 cut(s)	215, 395, 488
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	442
PspN4I	GGNNCC	1 cut(s)	416
PspPI	GGNCC	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	497
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	120, 462
SatI	GCNGC	3 cut(s)	214, 394, 487
Sau3AI	GATC	2 cut(s)	435, 497
Sau96I	GGNCC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	260
SetI	ASST	7 cut(s)	86, 138, 194, 226, 247, 276, 508
SfaNI	GCATC	2 cut(s)	34, 380
SfuI	TTCGAA	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	42
Sse9I	AATT	4 cut(s)	89, 199, 232, 380
SspMI	CTAG	1 cut(s)	81
StyI	CCWWGG	2 cut(s)	24, 418
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	89, 199, 232, 380
TatI	WGTACW	1 cut(s)	468
Tru1I	TTAA	2 cut(s)	120, 462
Tru9I	TTAA	2 cut(s)	120, 462
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	3 cut(s)	213, 393, 486
TspDTI	ATGAA	2 cut(s)	330, 393
TspRI	CASTG	1 cut(s)	46
XapI	RAATTY	3 cut(s)	199, 232, 380
XmnI	GAANNNNTTC	1 cut(s)	413
XspI	CTAG	1 cut(s)	81
Zsp2I	ATGCAT	2 cut(s)	49, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.