Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

59142753 .. 59146155

Gene Structure 3403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G036050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTATGAACGGAGCTGGCGCAGCAGCAGCAGCAGCCTATAATCCTCGCACCGTTGAAGAGGTTTTCCGAGATTTCAAGGGCCGCCGGACTGGCTTGATCAAGGCTCTAACCACTGATGCTGAAGAGTTCCATCAGCAGTGTGATCCTGAGAAGGAGAATCTTTCCTTGTATGGATACCCTAGTGAGCAATGGGAAGTCAACTTACCTGCTGAAGAAGTGCCTCCGGAGCTGCCAGAGCCTGCACTGGGTATCAACTTTGCAAGAGATGGTATGGCAGAAAAGGACTGGCTAGCTTTGGTTGCTGTCCACAGTGATGCATGGCTACTTTCTGTTGCCTTCTATTTTGGATCCAGATTTGGGTTCGATAAGGTTGATAGGAAGAAACTTTTTAGCATGATAAATGAACTTCCAACAATATTTGAAGTTGTGACTGGTACTGCAAAGAAGGAAGTAAAGGAGAAGCCATCTTCAAACCACGGTAGCAACAAATCCAAGTCAAACTCCAAAGCGAGAGGATCAGAATCCCAAGCAAGACATTTGGAAGTGCTGCCAGCAAAAGATGAAGATGAGGGGTTAGACGAAGATGAGGAAGACGAACATGAAGAAGAGACTTGTGGAGCTTGTGGCCGAGGCGGGCCATCTTCATTAGATGAACCCTGGATTTTGTGTGATTTCTGTGAGACGTGGTTCCACATGAAGTGTGTGAAGGTGACCCCTGCAAAAGCAAAGCAGATTAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGGCTCGCCCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

262

Amino Acids

29.22

Weight (kDa)

5.17

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	18 - 145	6.4e-66	Alfin
PHD	PF00628	206 - 254	2.9e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	2 cut(s)	85, 636
AclWI	GGATC	4 cut(s)	140, 345, 358, 526
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	2 cut(s)	144, 234
AfaI	GTAC	2 cut(s)	439, 746
AfiI	CCNNNNNNNGG	2 cut(s)	248, 360
AgsI	TTSAA	4 cut(s)	59, 79, 425, 474
AjiI	CACGTC	1 cut(s)	687
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	4 cut(s)	17, 232, 296, 623
AluI	AGCT	4 cut(s)	17, 232, 296, 623
Alw26I	GTCTC	2 cut(s)	605, 677
AlwI	GGATC	4 cut(s)	140, 345, 358, 526
AlwNI	CAGNNNCTG	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	226
AoxI	GGCC	3 cut(s)	82, 628, 638
ApeKI	GCWGC	8 cut(s)	23, 26, 29, 32, 35, 232, 550, 762
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	82, 638
AsuHPI	GGTGA	1 cut(s)	724
AsuNHI	GCTAGC	1 cut(s)	292
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BamHI	GGATCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	778
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	8 cut(s)	35, 38, 41, 44, 47, 219, 537, 774
BccI	CCATC	4 cut(s)	141, 263, 475, 649
BciT130I	CCWGG	1 cut(s)	661
BciVI	GTATCC	1 cut(s)	170
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	2 cut(s)	605, 677
BfaI	CTAG	2 cut(s)	183, 293
BfuAI	ACCTGC	1 cut(s)	217
BfuI	GTATCC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	93
BisI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 85, 233, 551, 763
BlsI	GCNGC	9 cut(s)	25, 28, 31, 34, 37, 86, 234, 552, 764
Bme1390I	CCNGG	1 cut(s)	661
BmgBI	CACGTC	1 cut(s)	687
BmgT120I	GGNCC	2 cut(s)	82, 638
BmiI	GGNNCC	2 cut(s)	352, 692
BmrFI	CCNGG	1 cut(s)	661
BmrI	ACTGGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	109, 307
BmtI	GCTAGC	1 cut(s)	296
BmuI	ACTGGG	1 cut(s)	257
BpiI	GAAGAC	1 cut(s)	600
BsaBI	GATNNNNATC	1 cut(s)	523
BsaJI	CCNNGG	3 cut(s)	478, 631, 659
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 360
Bse1I	ACTGG	4 cut(s)	97, 252, 293, 439
Bse3DI	GCAATG	1 cut(s)	197
Bse8I	GATNNNNATC	1 cut(s)	523
BseAI	TCCGGA	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	3 cut(s)	478, 631, 659
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	2 cut(s)	248, 360
BseMI	GCAATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	4 cut(s)	97, 252, 293, 439
BseXI	GCAGC	8 cut(s)	35, 38, 41, 44, 47, 219, 537, 774
BsgI	GTGCAG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	84, 630, 640
BsiSI	CCGG	2 cut(s)	88, 227
BslI	CCNNNNNNNGG	2 cut(s)	248, 360
BsmAI	GTCTC	2 cut(s)	605, 677
BsmBI	CGTCTC	1 cut(s)	677
BsnI	GGCC	3 cut(s)	84, 630, 640
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp13I	TCCGGA	1 cut(s)	226
Bsp143I	GATC	4 cut(s)	99, 145, 350, 518
BspACI	CCGC	2 cut(s)	85, 636
BspANI	GGCC	3 cut(s)	84, 630, 640
BspCNI	CTCAG	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	352, 692
BspMI	ACCTGC	1 cut(s)	217
BspOI	GCTAGC	1 cut(s)	296
BspPI	GGATC	4 cut(s)	140, 345, 358, 526
BsrDI	GCAATG	1 cut(s)	197
BsrI	ACTGG	4 cut(s)	97, 252, 293, 439
BssECI	CCNNGG	3 cut(s)	478, 631, 659
BssMI	GATC	4 cut(s)	99, 145, 350, 518
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	3 cut(s)	55, 314, 482
Bst6I	CTCTTC	3 cut(s)	54, 120, 603
BstC8I	GCNNGC	6 cut(s)	19, 243, 294, 555, 638, 778
BstDEI	CTNAG	1 cut(s)	150
BstDSI	CCRYGG	1 cut(s)	478
BstEII	GGTNACC	1 cut(s)	712
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	4 cut(s)	102, 148, 353, 521
BstMAI	GTCTC	2 cut(s)	605, 677
BstMBI	GATC	4 cut(s)	99, 145, 350, 518
BstNI	CCWGG	1 cut(s)	661
BstPI	GGTNACC	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	659
BstV1I	GCAGC	8 cut(s)	35, 38, 41, 44, 47, 219, 537, 774
BstV2I	GAAGAC	1 cut(s)	600
BstX2I	RGATCY	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	350
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	84, 630, 640
BtgI	CCRYGG	1 cut(s)	478
BtrI	CACGTC	1 cut(s)	687
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	4 cut(s)	114, 146, 245, 319
BveI	ACCTGC	1 cut(s)	217
Cac8I	GCNNGC	6 cut(s)	19, 243, 294, 555, 638, 778
CaiI	CAGNNNCTG	1 cut(s)	242
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	82, 638
Csp6I	GTAC	2 cut(s)	438, 745
CviAII	CATG	5 cut(s)	321, 397, 602, 697, 759
CviQI	GTAC	2 cut(s)	438, 745
DdeI	CTNAG	1 cut(s)	150
DpnI	GATC	4 cut(s)	101, 147, 352, 520
DpnII	GATC	4 cut(s)	99, 145, 350, 518
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	3 cut(s)	54, 120, 603
EarI	CTCTTC	3 cut(s)	54, 120, 603
Eco24I	GRGCYC	1 cut(s)	778
Eco57I	CTGAAG	2 cut(s)	144, 234
Eco91I	GGTNACC	1 cut(s)	712
EcoO65I	GGTNACC	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	659
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	778
Esp3I	CGTCTC	1 cut(s)	677
FaeI	CATG	5 cut(s)	324, 400, 605, 700, 762
FaiI	YATR	9 cut(s)	8, 42, 174, 275, 322, 398, 603, 698, 760
FatI	CATG	5 cut(s)	320, 396, 601, 696, 758
FauI	CCCGC	1 cut(s)	629
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 85, 233, 551, 763
FriOI	GRGCYC	1 cut(s)	778
Fsp4HI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 85, 233, 551, 763
FspBI	CTAG	2 cut(s)	183, 293
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 85, 233, 551, 763
HaeIII	GGCC	3 cut(s)	84, 630, 640
HapII	CCGG	2 cut(s)	88, 227
HhaI	GCGC	1 cut(s)	23
Hin1II	CATG	5 cut(s)	324, 400, 605, 700, 762
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	160, 524
HpaII	CCGG	2 cut(s)	88, 227
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	2 cut(s)	202, 310
Hpy188I	TCNGA	2 cut(s)	71, 523
Hpy188III	TCNNGA	3 cut(s)	149, 227, 354
Hpy8I	GTNNAC	2 cut(s)	202, 310
HpyAV	CCTTC	5 cut(s)	148, 349, 442, 703, 765
HpyCH4III	ACNGT	3 cut(s)	55, 314, 482
HpyCH4IV	ACGT	1 cut(s)	686
HpyCH4V	TGCA	6 cut(s)	245, 263, 320, 443, 722, 762
HpyF3I	CTNAG	1 cut(s)	150
HpySE526I	ACGT	1 cut(s)	686
Hsp92II	CATG	5 cut(s)	324, 400, 605, 700, 762
HspAI	GCGC	1 cut(s)	21
Kpn2I	TCCGGA	1 cut(s)	226
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	4 cut(s)	99, 145, 350, 518
LmnI	GCTCC	3 cut(s)	14, 229, 620
Lsp1109I	GCAGC	8 cut(s)	35, 38, 41, 44, 47, 219, 537, 774
LweI	GCATC	2 cut(s)	109, 307
MaeI	CTAG	2 cut(s)	183, 293
MaeII	ACGT	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	430, 712
MalI	GATC	4 cut(s)	101, 147, 352, 520
MboI	GATC	4 cut(s)	99, 145, 350, 518
MflI	RGATCY	1 cut(s)	350
MhlI	GDGCHC	1 cut(s)	778
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	8 cut(s)	55, 57, 234, 509, 565, 583, 626, 765
Mph1103I	ATGCAT	1 cut(s)	322
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	2 cut(s)	88, 227
MspR9I	CCNGG	1 cut(s)	661
MvaI	CCWGG	1 cut(s)	661
NdeII	GATC	4 cut(s)	99, 145, 350, 518
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	5 cut(s)	324, 400, 605, 700, 762
NlaIV	GGNNCC	2 cut(s)	352, 692
NmeAIII	GCCGAG	1 cut(s)	656
NmuCI	GTSAC	2 cut(s)	430, 712
NsiI	ATGCAT	1 cut(s)	322
PfeI	GAWTC	2 cut(s)	160, 524
PkrI	GCNGC	9 cut(s)	25, 28, 31, 34, 37, 86, 234, 552, 764
Psp6I	CCWGG	1 cut(s)	659
PspEI	GGTNACC	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	2 cut(s)	352, 692
PspPI	GGNCC	2 cut(s)	82, 638
PstNI	CAGNNNCTG	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	350
RsaI	GTAC	2 cut(s)	439, 746
RsaNI	GTAC	2 cut(s)	438, 745
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	738
SatI	GCNGC	9 cut(s)	24, 27, 30, 33, 36, 85, 233, 551, 763
Sau3AI	GATC	4 cut(s)	99, 145, 350, 518
Sau96I	GGNCC	2 cut(s)	82, 638
ScrFI	CCNGG	1 cut(s)	661
SduI	GDGCHC	1 cut(s)	778
SetI	ASST	9 cut(s)	19, 66, 211, 234, 298, 375, 625, 689, 714
SfaNI	GCATC	2 cut(s)	109, 307
SmiMI	CAYNNNNRTG	1 cut(s)	315
SsiI	CCGC	2 cut(s)	85, 636
SspI	AATATT	1 cut(s)	420
SspMI	CTAG	2 cut(s)	183, 293
StyD4I	CCNGG	1 cut(s)	659
TaaI	ACNGT	3 cut(s)	55, 314, 482
TaiI	ACGT	1 cut(s)	689
TaqI	TCGA	1 cut(s)	366
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	87
TfiI	GAWTC	2 cut(s)	160, 524
Tru1I	TTAA	1 cut(s)	738
Tru9I	TTAA	1 cut(s)	738
TscAI	CASTG	4 cut(s)	121, 146, 252, 319
TseFI	GTSAC	2 cut(s)	430, 712
TseI	GCWGC	8 cut(s)	23, 26, 29, 32, 35, 232, 550, 762
Tsp45I	GTSAC	2 cut(s)	430, 712
TspDTI	ATGAA	8 cut(s)	23, 420, 579, 618, 636, 669, 713, 747
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	4 cut(s)	121, 146, 252, 319
XspI	CTAG	2 cut(s)	183, 293
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.