Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

6939813 .. 6943011

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20510.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAGGAGGAACTGCGCACTACAGCCCTCGAACTGTCGAAGAAGTCTTTCGAGATTTTAAGGGCCGTCGAGCTGGCATCATCCAAGCTCTCACCACTGATGTGGAAGATTTTTTCCAGCAATGCGACCCTGAGAAGCAGAATCTCTGCTTGTATGGATTCCCAAATGAAGTGTGGGAAGTTAACTTACCAGCTGAAGAAGTGCCTCCTGAGCTTCCCGAACCTGCACTCGGCATTAACTTTGCCAGAGATGGGATGCAGGAAAGAAACTGGCTTTCTCTCGTTGCTGTCCACAGTGATGCGTGGTTACTTTCTGTGTCTTTTTACTTTGGTTCAAGATTTGGTTTCGATAGAGCTGACAGGAAGCGCTTGTTTAGTATGATAAATGAGGTTCCTACTGTATATGAAGTTGTAACTGGAAATGCAGAGAAGCAAACAAAGGAAATGCCCTCTTCAGCAAATCAAAATGGCAACAGATCCAAGTCAAATTCAAAAATGAGAGGTTTAGAAAGTAAAAGTTCAAAGACGATACATGCCAAGGATGAGGAAGAAGGATTAGAGTTAGAAGAAGGGGAAGAGGAAGAGGATGAGGATGAAGACGAACACGGTGAAACCCTATGTGGAGCATGTGGAGATAACTATGCTTCTGATGAATTCTGGATTTGCTGTGACATGTGCGAGAAATGGTTCCACGGGGAGTGTGTGAAGATCACTCCAGCTAGAGCGGAGCATATCAAGCATTACAAGTGCCCTACTTGCAGCAACAAAAGAGCACGACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

260

Amino Acids

29.59

Weight (kDa)

4.79

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	4 - 98	8.6e-49	Alfin
PHD	PF00628	166 - 212	2.2e-08	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	18
Acc36I	ACCTGC	1 cut(s)	232
AccBSI	CCGCTC	1 cut(s)	725
AciI	CCGC	1 cut(s)	725
AclWI	GGATC	1 cut(s)	471
AcsI	RAATTY	2 cut(s)	487, 653
AcuI	CTGAAG	2 cut(s)	216, 438
AfeI	AGCGCT	1 cut(s)	368
AfiI	CCNNNNNNNGG	2 cut(s)	230, 252
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	3 cut(s)	336, 492, 522
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	6 cut(s)	74, 89, 194, 214, 356, 719
AluI	AGCT	6 cut(s)	74, 89, 194, 214, 356, 719
Alw21I	GWGCWC	1 cut(s)	775
AlwI	GGATC	1 cut(s)	471
Aor51HI	AGCGCT	1 cut(s)	368
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	759
ApoI	RAATTY	2 cut(s)	487, 653
Asp700I	GAANNNNTTC	2 cut(s)	48, 686
AspLEI	GCGC	2 cut(s)	19, 369
AspS9I	GGNCC	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	85, 620
BaeGI	GKGCMC	1 cut(s)	752
BarI	GAAGNNNNNNTAC	2 cut(s)	171, 203
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	775
BbvI	GCAGC	1 cut(s)	771
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	51
BfaI	CTAG	2 cut(s)	720, 781
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	370
BfuAI	ACCTGC	1 cut(s)	232
BisI	GCNGC	1 cut(s)	760
BlsI	GCNGC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	393, 689
BmsI	GCATC	3 cut(s)	87, 246, 289
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	537, 691
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 252
Bse1I	ACTGG	2 cut(s)	275, 421
Bse3DI	GCAATG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	537, 691
BseGI	GGATG	5 cut(s)	81, 261, 547, 592, 598
BseLI	CCNNNNNNNGG	2 cut(s)	230, 252
BseMI	GCAATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	123, 201
BseNI	ACTGG	2 cut(s)	275, 421
BseSI	GKGCMC	1 cut(s)	752
BseXI	GCAGC	1 cut(s)	771
BsgI	GTGCAG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	775
BslI	CCNNNNNNNGG	2 cut(s)	230, 252
BsnI	GGCC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	752, 775
Bsp143I	GATC	2 cut(s)	476, 708
BspACI	CCGC	1 cut(s)	725
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	2 cut(s)	124, 202
BspLI	GGNNCC	2 cut(s)	393, 689
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	471
BsrBI	CCGCTC	1 cut(s)	725
BsrDI	GCAATG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	275, 421
BssECI	CCNNGG	2 cut(s)	537, 691
BssMI	GATC	2 cut(s)	476, 708
BssT1I	CCWWGG	1 cut(s)	537
Bst4CI	ACNGT	4 cut(s)	37, 296, 400, 608
Bst6I	CTCTTC	3 cut(s)	457, 570, 576
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	132, 210
BstDSI	CCRYGG	1 cut(s)	691
BstF5I	GGATG	5 cut(s)	81, 261, 547, 592, 598
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	2 cut(s)	19, 369
BstKTI	GATC	2 cut(s)	479, 711
BstMBI	GATC	2 cut(s)	476, 708
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 736, 756
BstNSI	RCATGY	3 cut(s)	536, 630, 676
BstSFI	CTRYAG	1 cut(s)	22
BstSLI	GKGCMC	1 cut(s)	752
BstV1I	GCAGC	1 cut(s)	771
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	476
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	691
BtsCI	GGATG	5 cut(s)	81, 261, 547, 592, 598
BtsIMutI	CAGTG	2 cut(s)	96, 301
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	2 cut(s)	19, 369
Cfr13I	GGNCC	1 cut(s)	64
CviAII	CATG	3 cut(s)	533, 627, 673
CviJI	RGCY	9 cut(s)	27, 66, 74, 89, 194, 214, 274, 356, 719
CviKI_1	RGCY	9 cut(s)	27, 66, 74, 89, 194, 214, 274, 356, 719
DdeI	CTNAG	2 cut(s)	132, 210
DpnI	GATC	2 cut(s)	478, 710
DpnII	GATC	2 cut(s)	476, 708
Eam1104I	CTCTTC	3 cut(s)	457, 570, 576
EarI	CTCTTC	3 cut(s)	457, 570, 576
Eco130I	CCWWGG	1 cut(s)	537
Eco47III	AGCGCT	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	216, 438
EcoRI	GAATTC	1 cut(s)	653
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	3 cut(s)	536, 630, 676
FatI	CATG	3 cut(s)	532, 626, 672
Fnu4HI	GCNGC	1 cut(s)	760
FokI	GGATG	5 cut(s)	68, 268, 554, 599, 605
Fsp4HI	GCNGC	1 cut(s)	760
FspBI	CTAG	2 cut(s)	720, 781
FspI	TGCGCA	1 cut(s)	18
GlaI	GCGC	2 cut(s)	18, 368
GluI	GCNGC	1 cut(s)	760
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	66
HhaI	GCGC	2 cut(s)	19, 369
Hin1II	CATG	3 cut(s)	536, 630, 676
Hin6I	GCGC	2 cut(s)	17, 367
HinP1I	GCGC	2 cut(s)	17, 367
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	142, 159
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	2 cut(s)	85, 620
Hpy166II	GTNNAC	2 cut(s)	184, 292
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	5 cut(s)	53, 209, 218, 336, 658
Hpy8I	GTNNAC	2 cut(s)	184, 292
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	545, 563
HpyCH4III	ACNGT	4 cut(s)	37, 296, 400, 608
HpyCH4V	TGCA	4 cut(s)	227, 259, 425, 759
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 736, 756
HpyF3I	CTNAG	2 cut(s)	132, 210
Hsp92II	CATG	3 cut(s)	536, 630, 676
HspAI	GCGC	2 cut(s)	17, 367
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	476, 708
LmnI	GCTCC	2 cut(s)	623, 727
Lsp1109I	GCAGC	1 cut(s)	771
LweI	GCATC	3 cut(s)	87, 246, 289
MaeI	CTAG	2 cut(s)	720, 781
MaeIII	GTNAC	3 cut(s)	306, 412, 668
MalI	GATC	2 cut(s)	478, 710
MbiI	CCGCTC	1 cut(s)	725
MboI	GATC	2 cut(s)	476, 708
MflI	RGATCY	1 cut(s)	476
MhlI	GDGCHC	2 cut(s)	752, 775
MluCI	AATT	2 cut(s)	487, 653
MnlI	CCTC	9 cut(s)	39, 216, 382, 460, 494, 538, 571, 577, 583
MroXI	GAANNNNTTC	2 cut(s)	48, 686
MseI	TTAA	3 cut(s)	60, 183, 237
MslI	CAYNNNNRTG	2 cut(s)	101, 297
MspA1I	CMGCKG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	211, 736, 756
NdeII	GATC	2 cut(s)	476, 708
NlaIII	CATG	3 cut(s)	536, 630, 676
NlaIV	GGNNCC	2 cut(s)	393, 689
NmeAIII	GCCGAG	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	668
NsbI	TGCGCA	1 cut(s)	18
NspI	RCATGY	3 cut(s)	536, 630, 676
OliI	CACNNNNGTG	1 cut(s)	101
PciI	ACATGT	1 cut(s)	672
PdmI	GAANNNNTTC	2 cut(s)	48, 686
PfeI	GAWTC	2 cut(s)	142, 159
PkrI	GCNGC	1 cut(s)	761
PscI	ACATGT	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	393, 689
PspPI	GGNCC	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	194
RseI	CAYNNNNRTG	2 cut(s)	101, 297
SaqAI	TTAA	3 cut(s)	60, 183, 237
SatI	GCNGC	1 cut(s)	760
Sau3AI	GATC	2 cut(s)	476, 708
Sau96I	GGNCC	1 cut(s)	64
SduI	GDGCHC	2 cut(s)	752, 775
SetI	ASST	9 cut(s)	76, 91, 196, 216, 226, 358, 393, 505, 721
SfaNI	GCATC	3 cut(s)	87, 246, 289
SfcI	CTRYAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	2 cut(s)	101, 297
Sse9I	AATT	2 cut(s)	487, 653
SsiI	CCGC	1 cut(s)	725
SspMI	CTAG	2 cut(s)	720, 781
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	4 cut(s)	37, 296, 400, 608
TaqI	TCGA	5 cut(s)	31, 39, 52, 70, 348
TasI	AATT	2 cut(s)	487, 653
TfiI	GAWTC	2 cut(s)	142, 159
Tru1I	TTAA	3 cut(s)	60, 183, 237
Tru9I	TTAA	3 cut(s)	60, 183, 237
TscAI	CASTG	2 cut(s)	103, 301
TseFI	GTSAC	1 cut(s)	668
TseI	GCWGC	1 cut(s)	759
Tsp45I	GTSAC	1 cut(s)	668
TspDTI	ATGAA	4 cut(s)	183, 420, 609, 666
TspRI	CASTG	2 cut(s)	103, 301
XapI	RAATTY	2 cut(s)	487, 653
XceI	RCATGY	3 cut(s)	536, 630, 676
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmnI	GAANNNNTTC	2 cut(s)	48, 686
XspI	CTAG	2 cut(s)	720, 781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.