Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039327.1

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 953

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039327.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

gaaacgcctttttaatatgataaatgagcttccaactatattcgagattgttacagggacagccaagaaacaagtaaaggagaggtcaacaaattcaaatcatggcagcaacaaacctaaatcaaattcgaagagaggttctgagtctcagggaaagtatgcaaaggtaatgcaagcaagggaagactatgaggatggcacagaagatgaagatgaggatgagcatggagagacactatgtgggtcttgtggagagaactatgcatctgatgaattttggatttgctgcgatgtctgtgagaagtggttccatggcaagtgtgtgaagatcaccccagcaagggccgagcatattaagcagtacaaatgtccatcttgcagcaacaagagatcccgaccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

133

Amino Acids

15.14

Weight (kDa)

7.04

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	385
AcsI	RAATTY	3 cut(s)	92, 125, 273
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	363
AfiI	CCNNNNNNNGG	2 cut(s)	340, 341
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	2 cut(s)	151, 225
AlwI	GGATC	1 cut(s)	385
AoxI	GGCC	1 cut(s)	343
ApeKI	GCWGC	3 cut(s)	106, 286, 379
ApoI	RAATTY	3 cut(s)	92, 125, 273
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	323
AsuII	TTCGAA	1 cut(s)	129
BbsI	GAAGAC	1 cut(s)	190
BbvI	GCAGC	3 cut(s)	118, 273, 391
BccI	CCATC	2 cut(s)	189, 380
BcoDI	GTCTC	2 cut(s)	151, 225
BisI	GCNGC	3 cut(s)	107, 287, 380
BlsI	GCNGC	3 cut(s)	108, 288, 381
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	190
Bpu14I	TTCGAA	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	2 cut(s)	340, 341
BseDI	CCNNGG	1 cut(s)	311
BseGI	GGATG	2 cut(s)	200, 224
BseLI	CCNNNNNNNGG	2 cut(s)	340, 341
BseMII	CTCAG	2 cut(s)	133, 162
BseXI	GCAGC	3 cut(s)	118, 273, 391
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	340, 341
BsmAI	GTCTC	2 cut(s)	151, 225
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	345
Bsp119I	TTCGAA	1 cut(s)	129
Bsp143I	GATC	2 cut(s)	328, 390
Bsp19I	CCATGG	1 cut(s)	311
BspANI	GGCC	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	134, 161
BspLI	GGNNCC	1 cut(s)	309
BspPI	GGATC	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	311
BssMI	GATC	2 cut(s)	328, 390
BssT1I	CCWWGG	1 cut(s)	311
Bst6I	CTCTTC	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	142, 148
BstDSI	CCRYGG	1 cut(s)	311
BstF5I	GGATG	2 cut(s)	200, 224
BstKTI	GATC	2 cut(s)	331, 393
BstMAI	GTCTC	2 cut(s)	151, 225
BstMBI	GATC	2 cut(s)	328, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	118, 273, 391
BstV2I	GAAGAC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	390
BstYI	RGATCY	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	200, 224
Cac8I	GCNNGC	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	362
CviAII	CATG	3 cut(s)	102, 225, 312
CviJI	RGCY	3 cut(s)	29, 63, 345
CviKI_1	RGCY	3 cut(s)	29, 63, 345
CviQI	GTAC	1 cut(s)	362
DdeI	CTNAG	2 cut(s)	142, 148
DpnI	GATC	2 cut(s)	330, 392
DpnII	GATC	2 cut(s)	328, 390
DraIII	CACNNNGTG	1 cut(s)	240
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	311
EcoT14I	CCWWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	3 cut(s)	105, 228, 315
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	3 cut(s)	101, 224, 311
Fnu4HI	GCNGC	3 cut(s)	107, 287, 380
FokI	GGATG	2 cut(s)	207, 231
Fsp4HI	GCNGC	3 cut(s)	107, 287, 380
GluI	GCNGC	3 cut(s)	107, 287, 380
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	105, 228, 315
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	144
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	143, 269
Hpy188III	TCNNGA	2 cut(s)	44, 394
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4V	TGCA	4 cut(s)	162, 173, 264, 379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	142, 148
Hsp92II	CATG	3 cut(s)	105, 228, 315
Kzo9I	GATC	2 cut(s)	328, 390
LpnPI	CCDG	3 cut(s)	40, 135, 349
Lsp1109I	GCAGC	3 cut(s)	118, 273, 391
LweI	GCATC	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	50
MalI	GATC	2 cut(s)	330, 392
MboI	GATC	2 cut(s)	328, 390
MboII	GAAGA	5 cut(s)	143, 195, 216, 222, 338
MflI	RGATCY	1 cut(s)	390
MluCI	AATT	3 cut(s)	92, 125, 273
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	4 cut(s)	76, 129, 185, 209
Mph1103I	ATGCAT	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	2 cut(s)	13, 355
MwoI	GCNNNNNNNGC	1 cut(s)	356
NcoI	CCATGG	1 cut(s)	311
NdeII	GATC	2 cut(s)	328, 390
NlaIII	CATG	3 cut(s)	105, 228, 315
NlaIV	GGNNCC	1 cut(s)	309
NmeAIII	GCCGAG	1 cut(s)	371
NsiI	ATGCAT	1 cut(s)	266
NspV	TTCGAA	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	108, 288, 381
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	343
PsuI	RGATCY	1 cut(s)	390
RsaI	GTAC	1 cut(s)	363
RsaNI	GTAC	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	13, 355
SatI	GCNGC	3 cut(s)	107, 287, 380
Sau3AI	GATC	2 cut(s)	328, 390
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	153
SetI	ASST	6 cut(s)	31, 87, 119, 140, 169, 401
SfaNI	GCATC	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	129
Sse9I	AATT	3 cut(s)	92, 125, 273
StyI	CCWWGG	1 cut(s)	311
TaqI	TCGA	2 cut(s)	43, 129
TasI	AATT	3 cut(s)	92, 125, 273
TatI	WGTACW	1 cut(s)	361
Tru1I	TTAA	2 cut(s)	13, 355
Tru9I	TTAA	2 cut(s)	13, 355
TseI	GCWGC	3 cut(s)	106, 286, 379
TspDTI	ATGAA	2 cut(s)	223, 286
XapI	RAATTY	3 cut(s)	92, 125, 273
XmnI	GAANNNNTTC	1 cut(s)	306
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.