Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

16183127 .. 16187903

Gene Structure 4777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1186300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGATAGATAGAGAAATAAGGGGGGGGGAGAGAGCAATGAAGGGAGCTGATGCCGCGCTCTACAACCCTCGAACGGTCGAGGAGGTTTTCAGAGATTTCAAGGGCCGCAGAACTGGAATGATCAAGGCTCTCACTTCAGATGTTGAAAAATTCTTTCAGATGTGTGATCCTGAGAAGGAGAATCTTTCCTTATATGGATATCCTAGTGAGCAGTGGGAAGTCAACCTACCTGCTGAAGAAGTGCCTCCAGAGCTGCCAGAGCCTGCACTGGGTATCAACTTTGCAAGAGATGGTATGGCAGAAAAAGACTGGCTATCTTTGGTTGCTGTTCATAGTGATGCCTGGCTAGTTTCTGTTGCATTCTACTTTGGTGCCAGATTTGGGTTCGATAAGGCTGACAGGAAGCGGCTTTTTAATATGATTAATGAACTGCCAACAATATTTGAAGTTGTGACTGGTACAGCAAAAAAACAAGTAAAGGAGAAGTCATCTTCAAATCATGGCAGCAACAAATCCAAGTCAAGCTCCAAAGCGCGAGGATCAGAATTGCACGGAAGACATTCAGAAGTAGTGCAGCCAAAGGACGAAGATGAGGGCTTGGACGAAGAGGAGGAAGATGAACGTGAAGAGACATGTGGGGCATGTGGTGGAGGAGGACCGTCCTCACTGGACGAACCCTGGATTTTCTGTGATTTTTGTGAGACGTGGTTCCACATGAAATGCGTGAAGATGACCCCCGCAAGGGCAAAACAGATTAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGAGCCCGGCCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

269

Amino Acids

30.25

Weight (kDa)

5.38

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	25 - 152	3.1e-67	Alfin
PHD	PF00628	212 - 260	2.3e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	238
AccB1I	GGYRCC	1 cut(s)	371
AccII	CGCG	2 cut(s)	56, 535
AciI	CCGC	4 cut(s)	54, 106, 406, 738
AclWI	GGATC	2 cut(s)	161, 547
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	2 cut(s)	120, 255
AfaI	GTAC	2 cut(s)	460, 764
AfiI	CCNNNNNNNGG	5 cut(s)	73, 269, 381, 741, 742
AflIII	ACRYGT	1 cut(s)	632
AgsI	TTSAA	4 cut(s)	100, 146, 446, 495
AjiI	CACGTC	1 cut(s)	705
AjnI	CCWGG	2 cut(s)	341, 677
AluBI	AGCT	3 cut(s)	47, 253, 525
AluI	AGCT	3 cut(s)	47, 253, 525
Alw26I	GTCTC	2 cut(s)	623, 695
AlwI	GGATC	2 cut(s)	161, 547
AlwNI	CAGNNNCTG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	103, 797
ApeKI	GCWGC	4 cut(s)	253, 504, 574, 780
ApoI	RAATTY	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	559
AspLEI	GCGC	2 cut(s)	58, 535
AspS9I	GGNCC	2 cut(s)	103, 656
AsuC2I	CCSGG	1 cut(s)	796
AvaII	GGWCC	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	796
BarI	GAAGNNNNNNTAC	2 cut(s)	210, 242
BbsI	GAAGAC	1 cut(s)	562
BbvI	GCAGC	4 cut(s)	240, 516, 586, 792
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	343, 679
BclI	TGATCA	1 cut(s)	120
BcnI	CCSGG	1 cut(s)	796
BcoDI	GTCTC	2 cut(s)	623, 695
BfaI	CTAG	2 cut(s)	204, 347
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	7 cut(s)	54, 106, 254, 407, 505, 575, 781
BlsI	GCNGC	7 cut(s)	55, 107, 255, 408, 506, 576, 782
Bme1390I	CCNGG	3 cut(s)	343, 679, 796
Bme18I	GGWCC	1 cut(s)	656
BmgBI	CACGTC	1 cut(s)	705
BmgT120I	GGNCC	2 cut(s)	103, 656
BmiI	GGNNCC	2 cut(s)	373, 710
BmrFI	CCNGG	3 cut(s)	343, 679, 796
BmrI	ACTGGG	1 cut(s)	278
BmsI	GCATC	2 cut(s)	40, 328
BmuI	ACTGGG	1 cut(s)	278
BpiI	GAAGAC	1 cut(s)	562
BpmI	CTGGAG	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	796
BsaJI	CCNNGG	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 269, 381, 741, 742
Bse1I	ACTGG	5 cut(s)	118, 273, 314, 460, 672
Bse3DI	GCAATG	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	343, 679
BseDI	CCNNGG	1 cut(s)	677
BseLI	CCNNNNNNNGG	5 cut(s)	73, 269, 381, 741, 742
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	5 cut(s)	118, 273, 314, 460, 672
BseRI	GAGGAG	3 cut(s)	95, 623, 666
BseXI	GCAGC	4 cut(s)	240, 516, 586, 792
BsgI	GTGCAG	2 cut(s)	249, 593
Bsh1236I	CGCG	2 cut(s)	56, 535
Bsh1285I	CGRYCG	1 cut(s)	78
BshFI	GGCC	2 cut(s)	105, 799
BshNI	GGYRCC	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	796
BslI	CCNNNNNNNGG	5 cut(s)	73, 269, 381, 741, 742
BsmAI	GTCTC	2 cut(s)	623, 695
BsmBI	CGTCTC	1 cut(s)	695
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	2 cut(s)	105, 799
Bsp1286I	GDGCHC	1 cut(s)	796
Bsp143I	GATC	3 cut(s)	120, 166, 539
BspACI	CCGC	4 cut(s)	54, 106, 406, 738
BspANI	GGCC	2 cut(s)	105, 799
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	2 cut(s)	56, 535
BspLI	GGNNCC	2 cut(s)	373, 710
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	2 cut(s)	161, 547
BspT107I	GGYRCC	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	42
BsrI	ACTGG	5 cut(s)	118, 273, 314, 460, 672
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	3 cut(s)	120, 166, 539
Bst2UI	CCWGG	2 cut(s)	343, 679
Bst4CI	ACNGT	2 cut(s)	76, 660
Bst6I	CTCTTC	2 cut(s)	600, 621
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	171
BstFNI	CGCG	2 cut(s)	56, 535
BstHHI	GCGC	2 cut(s)	58, 535
BstKTI	GATC	3 cut(s)	123, 169, 542
BstMAI	GTCTC	2 cut(s)	623, 695
BstMBI	GATC	3 cut(s)	120, 166, 539
BstMCI	CGRYCG	1 cut(s)	78
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 250, 259, 777
BstNI	CCWGG	2 cut(s)	343, 679
BstNSI	RCATGY	2 cut(s)	636, 645
BstSCI	CCNGG	3 cut(s)	341, 677, 794
BstUI	CGCG	2 cut(s)	56, 535
BstV1I	GCAGC	4 cut(s)	240, 516, 586, 792
BstV2I	GAAGAC	1 cut(s)	562
BsuRI	GGCC	2 cut(s)	105, 799
BtrI	CACGTC	1 cut(s)	705
BtsI	GCAGTG	1 cut(s)	218
BtsIMutI	CAGTG	3 cut(s)	218, 266, 665
BveI	ACCTGC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	2 cut(s)	58, 535
Cfr13I	GGNCC	2 cut(s)	103, 656
Csp6I	GTAC	2 cut(s)	459, 763
CviAII	CATG	5 cut(s)	500, 633, 642, 715, 777
CviQI	GTAC	2 cut(s)	459, 763
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	122, 168, 541
DpnII	GATC	3 cut(s)	120, 166, 539
Eam1104I	CTCTTC	2 cut(s)	600, 621
EarI	CTCTTC	2 cut(s)	600, 621
Eco24I	GRGCYC	1 cut(s)	796
Eco32I	GATATC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	2 cut(s)	120, 255
EcoRII	CCWGG	2 cut(s)	341, 677
EcoRV	GATATC	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	796
Esp3I	CGTCTC	1 cut(s)	695
FaeI	CATG	5 cut(s)	503, 636, 645, 718, 780
FatI	CATG	5 cut(s)	499, 632, 641, 714, 776
FauI	CCCGC	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	120
Fnu4HI	GCNGC	7 cut(s)	54, 106, 254, 407, 505, 575, 781
FriOI	GRGCYC	1 cut(s)	796
Fsp4HI	GCNGC	7 cut(s)	54, 106, 254, 407, 505, 575, 781
FspBI	CTAG	2 cut(s)	204, 347
GlaI	GCGC	2 cut(s)	57, 534
GluI	GCNGC	7 cut(s)	54, 106, 254, 407, 505, 575, 781
GsuI	CTGGAG	1 cut(s)	231
HaeIII	GGCC	2 cut(s)	105, 799
HapII	CCGG	1 cut(s)	796
HhaI	GCGC	2 cut(s)	58, 535
Hin1II	CATG	5 cut(s)	503, 636, 645, 718, 780
Hin6I	GCGC	2 cut(s)	56, 533
HinP1I	GCGC	2 cut(s)	56, 533
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	1 cut(s)	796
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	5 cut(s)	92, 139, 159, 544, 565
Hpy188III	TCNNGA	2 cut(s)	170, 248
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	3 cut(s)	34, 169, 783
HpyCH4III	ACNGT	2 cut(s)	76, 660
HpyCH4IV	ACGT	2 cut(s)	622, 704
HpyCH4V	TGCA	6 cut(s)	266, 284, 359, 550, 574, 780
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 250, 259, 777
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	2 cut(s)	622, 704
Hsp92II	CATG	5 cut(s)	503, 636, 645, 718, 780
HspAI	GCGC	2 cut(s)	56, 533
Ksp22I	TGATCA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	120, 166, 539
LmnI	GCTCC	2 cut(s)	44, 530
Lsp1109I	GCAGC	4 cut(s)	240, 516, 586, 792
LweI	GCATC	2 cut(s)	40, 328
MaeI	CTAG	2 cut(s)	204, 347
MaeII	ACGT	2 cut(s)	622, 704
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	3 cut(s)	122, 168, 541
MboI	GATC	3 cut(s)	120, 166, 539
MboII	GAAGA	8 cut(s)	248, 483, 567, 599, 617, 626, 638, 739
MhlI	GDGCHC	1 cut(s)	796
MluCI	AATT	2 cut(s)	149, 545
MroXI	GAANNNNTTC	1 cut(s)	559
MseI	TTAA	4 cut(s)	414, 423, 756, 805
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	796
MspR9I	CCNGG	3 cut(s)	343, 679, 796
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	2 cut(s)	343, 679
MvnI	CGCG	2 cut(s)	56, 535
MwoI	GCNNNNNNNGC	4 cut(s)	53, 250, 259, 777
NciI	CCSGG	1 cut(s)	796
NdeII	GATC	3 cut(s)	120, 166, 539
NlaIII	CATG	5 cut(s)	503, 636, 645, 718, 780
NlaIV	GGNNCC	2 cut(s)	373, 710
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	2 cut(s)	636, 645
PciI	ACATGT	1 cut(s)	632
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	7 cut(s)	55, 107, 255, 408, 506, 576, 782
PscI	ACATGT	1 cut(s)	632
PshBI	ATTAAT	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	341, 677
PspGI	CCWGG	2 cut(s)	341, 677
PspN4I	GGNNCC	2 cut(s)	373, 710
PspPI	GGNCC	2 cut(s)	103, 656
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	460, 764
RsaNI	GTAC	2 cut(s)	459, 763
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	4 cut(s)	414, 423, 756, 805
SatI	GCNGC	7 cut(s)	54, 106, 254, 407, 505, 575, 781
Sau3AI	GATC	3 cut(s)	120, 166, 539
Sau96I	GGNCC	2 cut(s)	103, 656
ScrFI	CCNGG	3 cut(s)	343, 679, 796
SduI	GDGCHC	1 cut(s)	796
SetI	ASST	8 cut(s)	49, 87, 228, 232, 255, 527, 625, 707
SfaNI	GCATC	2 cut(s)	40, 328
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	2 cut(s)	149, 545
SsiI	CCGC	4 cut(s)	54, 106, 406, 738
SspI	AATATT	1 cut(s)	441
SspMI	CTAG	2 cut(s)	204, 347
StyD4I	CCNGG	3 cut(s)	341, 677, 794
TaaI	ACNGT	2 cut(s)	76, 660
TaiI	ACGT	2 cut(s)	625, 707
TaqI	TCGA	3 cut(s)	70, 78, 387
TasI	AATT	2 cut(s)	149, 545
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	3 cut(s)	56, 108, 409
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	4 cut(s)	414, 423, 756, 805
Tru9I	TTAA	4 cut(s)	414, 423, 756, 805
TscAI	CASTG	3 cut(s)	218, 273, 672
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	4 cut(s)	253, 504, 574, 780
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	6 cut(s)	53, 320, 441, 633, 731, 765
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	3 cut(s)	218, 273, 672
VpaK11BI	GGWCC	1 cut(s)	656
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	149
XceI	RCATGY	2 cut(s)	636, 645
XmnI	GAANNNNTTC	1 cut(s)	559
XspI	CTAG	2 cut(s)	204, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.