Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

23059623 .. 23062714

Gene Structure 3092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTATGAACGGAGCTGGCGCCGCAGCAGGCTATAATCCTCGCACCGTTGAAGAGGTTTTCCGAGATTTCAAGGGCCGCCGGACTGGCTTGATCAAGGCTCTAACTACTGATGCTGAAGAGTTCCATCAGCAGTGTGATCCTGAGAAGGAGAATCTTTCCTTGTATGGATACCCTAGTGAGCAATGGGAAGTCAACTTACCTGCTGAAGAAGTGCCTCCGGAGCTGCCAGAGCCTGCACTGGGTATCAACTTTGCAAGAGATGGTATGGCAGAAAAGGACTGGCTAGCTTTGGTTGCTGTCCACAGTGATGCATGGCTACTTTCTGTTGCCTTCTATTTTGGATCCAGATTTGGGTTTGATAAGGTTGATAGGAAGAAACTTTTTAGCATGATAAATGAACTTCCAACAATATTTGAAGTTGTGACTGGTACTGCAAAGAAGGAAGTAAAGGAGAAGCCATCTTCAAACCACGGTAGCAACAAATCCAAGTCAAACTCCAAAGCGAGAGGATCAGAATCCCAAGCAAGACATTTGGAAGTGCTGCCAGCAAAAGATGAAGATGAGGGGTTAGACGAAGATGAGGAAGACGAACATGAAGAAGAGACTTGTGGAGCTTGTGGCCGAGGCGGGCCATCTTCATTAGATGAACCCTGGATTTTGTGTGATTTCTGTGAGACGTGGTTCCACATGAAGTGTGTGAAGGTGACCCCAGCAAAAGCAAAGCAGATTAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGGCTCGCCCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

5.17

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	16 - 143	6.3e-66	Alfin
PHD	PF00628	204 - 252	2.9e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	3 cut(s)	24, 79, 630
AclWI	GGATC	4 cut(s)	134, 339, 352, 520
AcoI	YGGCCR	1 cut(s)	622
AcuI	CTGAAG	2 cut(s)	138, 228
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	433, 740
AfiI	CCNNNNNNNGG	2 cut(s)	242, 354
AgsI	TTSAA	4 cut(s)	53, 73, 419, 468
AjiI	CACGTC	1 cut(s)	681
AjnI	CCWGG	1 cut(s)	653
AluBI	AGCT	4 cut(s)	17, 226, 290, 617
AluI	AGCT	4 cut(s)	17, 226, 290, 617
Alw26I	GTCTC	2 cut(s)	599, 671
AlwI	GGATC	4 cut(s)	134, 339, 352, 520
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	3 cut(s)	76, 622, 632
ApeKI	GCWGC	4 cut(s)	26, 226, 544, 756
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	76, 632
AsuHPI	GGTGA	1 cut(s)	718
AsuNHI	GCTAGC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	163, 196
BamHI	GGATCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	772
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	1 cut(s)	594
BbvI	GCAGC	4 cut(s)	38, 213, 531, 768
BccI	CCATC	4 cut(s)	135, 257, 469, 643
BciT130I	CCWGG	1 cut(s)	655
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	599, 671
BfaI	CTAG	2 cut(s)	177, 287
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	6 cut(s)	24, 27, 79, 227, 545, 757
BlsI	GCNGC	6 cut(s)	25, 28, 80, 228, 546, 758
Bme1390I	CCNGG	1 cut(s)	655
BmgBI	CACGTC	1 cut(s)	681
BmgT120I	GGNCC	2 cut(s)	76, 632
BmiI	GGNNCC	3 cut(s)	22, 346, 686
BmrFI	CCNGG	1 cut(s)	655
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	103, 301
BmtI	GCTAGC	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	594
BsaBI	GATNNNNATC	1 cut(s)	517
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	472, 625, 653
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 354
Bse1I	ACTGG	4 cut(s)	91, 246, 287, 433
Bse3DI	GCAATG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	655
BseDI	CCNNGG	3 cut(s)	472, 625, 653
BseJI	GATNNNNATC	1 cut(s)	517
BseLI	CCNNNNNNNGG	2 cut(s)	242, 354
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	4 cut(s)	91, 246, 287, 433
BseXI	GCAGC	4 cut(s)	38, 213, 531, 768
BseYI	CCCAGC	1 cut(s)	712
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	78, 624, 634
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	82, 221
BslI	CCNNNNNNNGG	2 cut(s)	242, 354
BsmAI	GTCTC	2 cut(s)	599, 671
BsmBI	CGTCTC	1 cut(s)	671
BsnI	GGCC	3 cut(s)	78, 624, 634
Bsp1286I	GDGCHC	1 cut(s)	772
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	93, 139, 344, 512
BspACI	CCGC	3 cut(s)	24, 79, 630
BspANI	GGCC	3 cut(s)	78, 624, 634
BspCNI	CTCAG	1 cut(s)	136
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	22, 346, 686
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	4 cut(s)	134, 339, 352, 520
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	4 cut(s)	91, 246, 287, 433
BssECI	CCNNGG	3 cut(s)	472, 625, 653
BssMI	GATC	4 cut(s)	93, 139, 344, 512
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	655
Bst4CI	ACNGT	3 cut(s)	49, 308, 476
Bst6I	CTCTTC	3 cut(s)	48, 114, 597
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	7 cut(s)	19, 31, 237, 288, 549, 632, 772
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	472
BstEII	GGTNACC	1 cut(s)	706
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	4 cut(s)	96, 142, 347, 515
BstMAI	GTCTC	2 cut(s)	599, 671
BstMBI	GATC	4 cut(s)	93, 139, 344, 512
BstMWI	GCNNNNNNNGC	7 cut(s)	23, 87, 223, 232, 296, 733, 753
BstNI	CCWGG	1 cut(s)	655
BstPI	GGTNACC	1 cut(s)	706
BstSCI	CCNGG	1 cut(s)	653
BstV1I	GCAGC	4 cut(s)	38, 213, 531, 768
BstV2I	GAAGAC	1 cut(s)	594
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	78, 624, 634
BtgI	CCRYGG	1 cut(s)	472
BtrI	CACGTC	1 cut(s)	681
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	3 cut(s)	140, 239, 313
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	7 cut(s)	19, 31, 237, 288, 549, 632, 772
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	76, 632
Csp6I	GTAC	2 cut(s)	432, 739
CviAII	CATG	5 cut(s)	315, 391, 596, 691, 753
CviQI	GTAC	2 cut(s)	432, 739
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	4 cut(s)	95, 141, 346, 514
DpnII	GATC	4 cut(s)	93, 139, 344, 512
EaeI	YGGCCR	1 cut(s)	622
Eam1104I	CTCTTC	3 cut(s)	48, 114, 597
EarI	CTCTTC	3 cut(s)	48, 114, 597
Eco24I	GRGCYC	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	138, 228
Eco91I	GGTNACC	1 cut(s)	706
EcoO65I	GGTNACC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	772
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	5 cut(s)	318, 394, 599, 694, 756
FaiI	YATR	9 cut(s)	8, 36, 168, 269, 316, 392, 597, 692, 754
FatI	CATG	5 cut(s)	314, 390, 595, 690, 752
FauI	CCCGC	1 cut(s)	623
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	6 cut(s)	24, 27, 79, 227, 545, 757
FriOI	GRGCYC	1 cut(s)	772
Fsp4HI	GCNGC	6 cut(s)	24, 27, 79, 227, 545, 757
FspBI	CTAG	2 cut(s)	177, 287
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	6 cut(s)	24, 27, 79, 227, 545, 757
GsaI	CCCAGC	1 cut(s)	716
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	78, 624, 634
HapII	CCGG	2 cut(s)	82, 221
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	318, 394, 599, 694, 756
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	154, 518
HpaII	CCGG	2 cut(s)	82, 221
HphI	GGTGA	1 cut(s)	718
Hpy166II	GTNNAC	2 cut(s)	196, 304
Hpy188I	TCNGA	2 cut(s)	65, 517
Hpy188III	TCNNGA	3 cut(s)	143, 221, 348
Hpy8I	GTNNAC	2 cut(s)	196, 304
HpyAV	CCTTC	5 cut(s)	142, 343, 436, 697, 759
HpyCH4III	ACNGT	3 cut(s)	49, 308, 476
HpyCH4IV	ACGT	1 cut(s)	680
HpyCH4V	TGCA	5 cut(s)	239, 257, 314, 437, 756
HpyF10VI	GCNNNNNNNGC	7 cut(s)	23, 87, 223, 232, 296, 733, 753
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	680
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	318, 394, 599, 694, 756
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	93, 139, 344, 512
LmnI	GCTCC	3 cut(s)	14, 223, 614
Lsp1109I	GCAGC	4 cut(s)	38, 213, 531, 768
LweI	GCATC	2 cut(s)	103, 301
MaeI	CTAG	2 cut(s)	177, 287
MaeII	ACGT	1 cut(s)	680
MaeIII	GTNAC	2 cut(s)	424, 706
MalI	GATC	4 cut(s)	95, 141, 346, 514
MboI	GATC	4 cut(s)	93, 139, 344, 512
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	772
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	431
MnlI	CCTC	8 cut(s)	49, 51, 228, 503, 559, 577, 620, 759
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	1 cut(s)	732
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	2 cut(s)	82, 221
MspR9I	CCNGG	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	655
MwoI	GCNNNNNNNGC	7 cut(s)	23, 87, 223, 232, 296, 733, 753
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	4 cut(s)	93, 139, 344, 512
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	5 cut(s)	318, 394, 599, 694, 756
NlaIV	GGNNCC	3 cut(s)	22, 346, 686
NmeAIII	GCCGAG	1 cut(s)	650
NmuCI	GTSAC	2 cut(s)	424, 706
NsiI	ATGCAT	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	154, 518
PkrI	GCNGC	6 cut(s)	25, 28, 80, 228, 546, 758
PluTI	GGCGCC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	653
PspEI	GGTNACC	1 cut(s)	706
PspFI	CCCAGC	1 cut(s)	712
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	3 cut(s)	22, 346, 686
PspPI	GGNCC	2 cut(s)	76, 632
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	344
RsaI	GTAC	2 cut(s)	433, 740
RsaNI	GTAC	2 cut(s)	432, 739
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	732
SatI	GCNGC	6 cut(s)	24, 27, 79, 227, 545, 757
Sau3AI	GATC	4 cut(s)	93, 139, 344, 512
Sau96I	GGNCC	2 cut(s)	76, 632
ScrFI	CCNGG	1 cut(s)	655
SduI	GDGCHC	1 cut(s)	772
SetI	ASST	9 cut(s)	19, 60, 205, 228, 292, 369, 619, 683, 708
SfaNI	GCATC	2 cut(s)	103, 301
SfoI	GGCGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	309
SsiI	CCGC	3 cut(s)	24, 79, 630
SspDI	GGCGCC	1 cut(s)	20
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	2 cut(s)	177, 287
StyD4I	CCNGG	1 cut(s)	653
TaaI	ACNGT	3 cut(s)	49, 308, 476
TaiI	ACGT	1 cut(s)	683
TatI	WGTACW	1 cut(s)	738
TauI	GCSGC	2 cut(s)	26, 81
TfiI	GAWTC	2 cut(s)	154, 518
Tru1I	TTAA	1 cut(s)	732
Tru9I	TTAA	1 cut(s)	732
TscAI	CASTG	3 cut(s)	140, 246, 313
TseFI	GTSAC	2 cut(s)	424, 706
TseI	GCWGC	4 cut(s)	26, 226, 544, 756
Tsp45I	GTSAC	2 cut(s)	424, 706
TspDTI	ATGAA	8 cut(s)	23, 414, 573, 612, 630, 663, 707, 741
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	140, 246, 313
XspI	CTAG	2 cut(s)	177, 287
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.