Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

11601542 .. 11606047

Gene Structure 4506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G005730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGGAAATCGATCGGCTGATGGGCTGACGCCGGGAACTGGTGGGCTGCTGTGTGTGGGCAGGGAGGAAAGATATGCACGCAGAGACGGGGCAGTCGCTGGGCTGCTTTTAATCATACAACGGTATGGGATGCAAGAAAAAGACTGGTTATCCTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGCAGTGGCCTTTTACTTCGGTGCTAGGTTTCAATTTGATAAAACTGATAGGAAACGCCTTTTTAATATGATAAATGAGCTTCCAACTATAGTCGAGATTGTTACAGGGACAGCCAAGAAACAAGTAAAGGAGAGGTCAACAAATTCAAATCATGGCAGCAACAAACCTAAATCAAATTCGAAGAGAGGTTCTAAGTCTCAGGGAAAGTATGCAAAGGTAATGCAAGCAAGGGAAGACTATGAGGATGGCACAGAAGATGAAGATGAGGATGAGCATGGAGAGACACTATGTGGGTCTTGTGGAGAGAACTATGCATCTGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACCCCAGCAAGGGCCAAGCATATTAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAGATCCCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

212

Amino Acids

23.85

Weight (kDa)

8.67

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	39 - 97	2e-23	Alfin
PHD	PF00628	159 - 205	9.4e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AclWI	GGATC	1 cut(s)	621
AcsI	RAATTY	3 cut(s)	328, 361, 509
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	1 cut(s)	599
AfiI	CCNNNNNNNGG	3 cut(s)	38, 576, 577
AgsI	TTSAA	2 cut(s)	218, 333
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
Alw26I	GTCTC	3 cut(s)	78, 387, 461
AlwI	GGATC	1 cut(s)	621
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	192, 579
ApeKI	GCWGC	5 cut(s)	46, 103, 342, 522, 615
ApoI	RAATTY	3 cut(s)	328, 361, 509
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	1 cut(s)	579
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	559
AsuII	TTCGAA	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	426
BbvI	GCAGC	5 cut(s)	33, 90, 354, 509, 627
BccI	CCATC	3 cut(s)	14, 425, 616
BcnI	CCSGG	1 cut(s)	33
BcoDI	GTCTC	3 cut(s)	78, 387, 461
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	1 cut(s)	273
BisI	GCNGC	5 cut(s)	47, 104, 343, 523, 616
BlsI	GCNGC	5 cut(s)	48, 105, 344, 524, 617
Bme1390I	CCNGG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	579
BmiI	GGNNCC	1 cut(s)	545
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	3 cut(s)	120, 163, 509
BpiI	GAAGAC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	153, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 576, 577
Bse1I	ACTGG	2 cut(s)	43, 149
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	2 cut(s)	153, 547
BseGI	GGATG	3 cut(s)	135, 436, 460
BseLI	CCNNNNNNNGG	3 cut(s)	38, 576, 577
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	2 cut(s)	43, 149
BseXI	GCAGC	5 cut(s)	33, 90, 354, 509, 627
BseYI	CCCAGC	2 cut(s)	98, 571
Bsh1285I	CGRYCG	1 cut(s)	14
BshFI	GGCC	2 cut(s)	194, 581
BshVI	ATCGAT	1 cut(s)	10
BsiEI	CGRYCG	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	3 cut(s)	38, 576, 577
BsmAI	GTCTC	3 cut(s)	78, 387, 461
BsmBI	CGTCTC	1 cut(s)	78
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	194, 581
Bsp119I	TTCGAA	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	11, 564, 626
Bsp19I	CCATGG	1 cut(s)	547
BspANI	GGCC	2 cut(s)	194, 581
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	365
BsrI	ACTGG	2 cut(s)	43, 149
BssECI	CCNNGG	2 cut(s)	153, 547
BssMI	GATC	3 cut(s)	11, 564, 626
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	2 cut(s)	153, 547
Bst4CI	ACNGT	2 cut(s)	123, 170
Bst6I	CTCTTC	1 cut(s)	362
BstACI	GRCGYC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	79, 411
BstDEI	CTNAG	2 cut(s)	378, 384
BstDSI	CCRYGG	1 cut(s)	547
BstF5I	GGATG	3 cut(s)	135, 436, 460
BstKTI	GATC	3 cut(s)	14, 567, 629
BstMAI	GTCTC	3 cut(s)	78, 387, 461
BstMBI	GATC	3 cut(s)	11, 564, 626
BstMCI	CGRYCG	1 cut(s)	14
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	33, 90, 354, 509, 627
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	626
BstYI	RGATCY	1 cut(s)	626
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	194, 581
BsuTUI	ATCGAT	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	547
BtgZI	GCGATG	1 cut(s)	540
BtsCI	GGATG	3 cut(s)	135, 436, 460
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	175, 195
Cac8I	GCNNGC	2 cut(s)	79, 411
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	579
ClaI	ATCGAT	1 cut(s)	10
CseI	GACGC	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	598
CviAII	CATG	4 cut(s)	177, 338, 461, 548
CviJI	RGCY	8 cut(s)	17, 25, 46, 103, 194, 265, 299, 581
CviKI_1	RGCY	8 cut(s)	17, 25, 46, 103, 194, 265, 299, 581
CviQI	GTAC	1 cut(s)	598
DdeI	CTNAG	2 cut(s)	378, 384
DpnI	GATC	3 cut(s)	13, 566, 628
DpnII	GATC	3 cut(s)	11, 564, 626
DraIII	CACNNNGTG	1 cut(s)	476
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	2 cut(s)	153, 547
EcoT14I	CCWWGG	2 cut(s)	153, 547
EcoT22I	ATGCAT	2 cut(s)	178, 502
ErhI	CCWWGG	2 cut(s)	153, 547
Esp3I	CGTCTC	1 cut(s)	78
FaeI	CATG	4 cut(s)	180, 341, 464, 551
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	4 cut(s)	176, 337, 460, 547
Fnu4HI	GCNGC	5 cut(s)	47, 104, 343, 523, 616
FokI	GGATG	3 cut(s)	142, 443, 467
Fsp4HI	GCNGC	5 cut(s)	47, 104, 343, 523, 616
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	5 cut(s)	47, 104, 343, 523, 616
GsaI	CCCAGC	2 cut(s)	102, 575
HaeIII	GGCC	2 cut(s)	194, 581
HapII	CCGG	1 cut(s)	32
HgaI	GACGC	1 cut(s)	37
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	4 cut(s)	180, 341, 464, 551
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	559
Hpy166II	GTNNAC	2 cut(s)	166, 324
Hpy188I	TCNGA	1 cut(s)	505
Hpy188III	TCNNGA	2 cut(s)	280, 630
Hpy8I	GTNNAC	2 cut(s)	166, 324
HpyCH4III	ACNGT	2 cut(s)	123, 170
HpyCH4V	TGCA	8 cut(s)	77, 133, 176, 188, 398, 409, 500, 615
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	2 cut(s)	378, 384
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	4 cut(s)	180, 341, 464, 551
Kzo9I	GATC	3 cut(s)	11, 564, 626
LpnPI	CCDG	8 cut(s)	24, 45, 46, 84, 130, 276, 371, 585
Lsp1109I	GCAGC	5 cut(s)	33, 90, 354, 509, 627
LweI	GCATC	3 cut(s)	120, 163, 509
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	180, 286
MalI	GATC	3 cut(s)	13, 566, 628
MboI	GATC	3 cut(s)	11, 564, 626
MboII	GAAGA	5 cut(s)	379, 431, 452, 458, 574
MflI	RGATCY	1 cut(s)	626
MluCI	AATT	4 cut(s)	218, 328, 361, 509
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	5 cut(s)	58, 312, 365, 421, 445
Mph1103I	ATGCAT	2 cut(s)	178, 502
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	3 cut(s)	110, 249, 591
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	592
NciI	CCSGG	1 cut(s)	33
NcoI	CCATGG	1 cut(s)	547
NdeII	GATC	3 cut(s)	11, 564, 626
NlaIII	CATG	4 cut(s)	180, 341, 464, 551
NlaIV	GGNNCC	1 cut(s)	545
NsiI	ATGCAT	2 cut(s)	178, 502
NspV	TTCGAA	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	542
PkrI	GCNGC	5 cut(s)	48, 105, 344, 524, 617
Ple19I	CGATCG	1 cut(s)	14
PspFI	CCCAGC	2 cut(s)	98, 571
PspN4I	GGNNCC	1 cut(s)	545
PspPI	GGNCC	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	626
PvuI	CGATCG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	599
RsaNI	GTAC	1 cut(s)	598
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	110, 249, 591
SatI	GCNGC	5 cut(s)	47, 104, 343, 523, 616
Sau3AI	GATC	3 cut(s)	11, 564, 626
Sau96I	GGNCC	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	7 cut(s)	215, 267, 323, 355, 376, 405, 637
SfaNI	GCATC	3 cut(s)	120, 163, 509
SfcI	CTRYAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	4 cut(s)	218, 328, 361, 509
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	2 cut(s)	153, 547
TaaI	ACNGT	2 cut(s)	123, 170
TaqI	TCGA	3 cut(s)	10, 279, 365
TasI	AATT	4 cut(s)	218, 328, 361, 509
TatI	WGTACW	1 cut(s)	597
Tru1I	TTAA	3 cut(s)	110, 249, 591
Tru9I	TTAA	3 cut(s)	110, 249, 591
TscAI	CASTG	2 cut(s)	175, 195
TseI	GCWGC	5 cut(s)	46, 103, 342, 522, 615
TspDTI	ATGAA	2 cut(s)	459, 522
TspRI	CASTG	2 cut(s)	175, 195
XapI	RAATTY	3 cut(s)	328, 361, 509
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	1 cut(s)	210
Zsp2I	ATGCAT	2 cut(s)	178, 502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.