Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

61020602 .. 61023794

Gene Structure 3193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGCTATGAACGGAGCTGGCGCCGCAGCTGCCTATAATCCTCGCACCGTTGAAGAGGTTTTCCGAGATTTCAAGGGCCGCCGAACTGGCTTGATCAAGGCTCTAACTACTGATGCTGAAGAGTTCCATCAGCAGTGTGATCCTGAGAAGGAGAATCTTTCCTTGTATGGATACCCTAGTGAGCAATGGGAAGTCAACTTACCTGCTGAAGAAGTGCCTCCGGAGCTGCCAGAGCCTGCACTGGGTATCAACTTTGCAAGAGATGGTATGGCAGAAAAGGACTGGCTAGCTTTGGTTGCTGTCCACAGTGATGCATGGCTACTTTCTGTTGCCTTCTATTTTGGATCCAGATTTGGGTTCGATAAGGTTGATAGCTGTTCAAATTTAAATTCTTCTTTTCCCAGGAGAGGATCAGAATCCCAAGCAAGACATTTGGAAGTGCTGCCAGCAAAAGATGAAGATGAGGGGTTAGACGAAGATGAGGAAGACGAACATGAAGAAGAGACTTGTGGAGCTTGTGGCCGAGGCGGGCCATCTTCATTAGATGAACCCTGGATTTTGTGTGATTTCTGTGAGACGTGGTTCCACATGAAGTGTGTGAAGGTGACCCCTGCAAAAGCAAAGCAGATTAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGGCTCGCCCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

227

Amino Acids

25.32

Weight (kDa)

4.75

Isoelectric Point (pI)

56.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	16 - 122	3.8e-56	Alfin
PHD	PF00628	170 - 218	2.3e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	3 cut(s)	24, 79, 528
AclWI	GGATC	4 cut(s)	134, 339, 352, 418
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	2 cut(s)	382, 388
AcuI	CTGAAG	2 cut(s)	138, 228
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	3 cut(s)	242, 354, 407
AgsI	TTSAA	3 cut(s)	53, 73, 381
AjiI	CACGTC	1 cut(s)	579
AjnI	CCWGG	2 cut(s)	401, 551
AluBI	AGCT	6 cut(s)	17, 29, 226, 290, 375, 515
AluI	AGCT	6 cut(s)	17, 29, 226, 290, 375, 515
Alw26I	GTCTC	2 cut(s)	497, 569
AlwI	GGATC	4 cut(s)	134, 339, 352, 418
AlwNI	CAGNNNCTG	1 cut(s)	236
Aor13HI	TCCGGA	1 cut(s)	220
AoxI	GGCC	3 cut(s)	76, 520, 530
ApeKI	GCWGC	5 cut(s)	26, 29, 226, 442, 654
ApoI	RAATTY	2 cut(s)	382, 388
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	76, 530
AsuHPI	GGTGA	1 cut(s)	616
AsuNHI	GCTAGC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	163, 196
BamHI	GGATCC	1 cut(s)	344
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	2 cut(s)	183, 215
BbsI	GAAGAC	1 cut(s)	492
BbvI	GCAGC	5 cut(s)	16, 38, 213, 429, 666
BccI	CCATC	3 cut(s)	135, 257, 541
BciT130I	CCWGG	2 cut(s)	403, 553
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	2 cut(s)	497, 569
BfaI	CTAG	2 cut(s)	177, 287
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	211
BfuI	GTATCC	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	7 cut(s)	24, 27, 30, 79, 227, 443, 655
BlsI	GCNGC	7 cut(s)	25, 28, 31, 80, 228, 444, 656
Bme1390I	CCNGG	2 cut(s)	403, 553
BmgBI	CACGTC	1 cut(s)	579
BmgT120I	GGNCC	2 cut(s)	76, 530
BmiI	GGNNCC	3 cut(s)	22, 346, 584
BmrFI	CCNGG	2 cut(s)	403, 553
BmrI	ACTGGG	1 cut(s)	251
BmsI	GCATC	2 cut(s)	103, 301
BmtI	GCTAGC	1 cut(s)	290
BmuI	ACTGGG	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	492
BsaBI	GATNNNNATC	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	401, 523, 551
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 354, 407
Bse1I	ACTGG	3 cut(s)	91, 246, 287
Bse3DI	GCAATG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	415
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	2 cut(s)	403, 553
BseDI	CCNNGG	3 cut(s)	401, 523, 551
BseJI	GATNNNNATC	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	242, 354, 407
BseMI	GCAATG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	3 cut(s)	91, 246, 287
BseXI	GCAGC	5 cut(s)	16, 38, 213, 429, 666
BsgI	GTGCAG	1 cut(s)	222
BshFI	GGCC	3 cut(s)	78, 522, 532
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	242, 354, 407
BsmAI	GTCTC	2 cut(s)	497, 569
BsmBI	CGTCTC	1 cut(s)	569
BsnI	GGCC	3 cut(s)	78, 522, 532
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	4 cut(s)	93, 139, 344, 410
BspACI	CCGC	3 cut(s)	24, 79, 528
BspANI	GGCC	3 cut(s)	78, 522, 532
BspCNI	CTCAG	1 cut(s)	136
BspEI	TCCGGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	22, 346, 584
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	290
BspPI	GGATC	4 cut(s)	134, 339, 352, 418
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	191
BsrI	ACTGG	3 cut(s)	91, 246, 287
BssECI	CCNNGG	3 cut(s)	401, 523, 551
BssMI	GATC	4 cut(s)	93, 139, 344, 410
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	403, 553
Bst4CI	ACNGT	2 cut(s)	49, 308
Bst6I	CTCTTC	3 cut(s)	48, 114, 495
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	6 cut(s)	19, 237, 288, 447, 530, 670
BstDEI	CTNAG	1 cut(s)	144
BstEII	GGTNACC	1 cut(s)	604
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	4 cut(s)	96, 142, 347, 413
BstMAI	GTCTC	2 cut(s)	497, 569
BstMBI	GATC	4 cut(s)	93, 139, 344, 410
BstMWI	GCNNNNNNNGC	8 cut(s)	23, 29, 87, 223, 232, 296, 631, 651
BstNI	CCWGG	2 cut(s)	403, 553
BstPI	GGTNACC	1 cut(s)	604
BstSCI	CCNGG	2 cut(s)	401, 551
BstV1I	GCAGC	5 cut(s)	16, 38, 213, 429, 666
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	78, 522, 532
BtrI	CACGTC	1 cut(s)	579
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	3 cut(s)	140, 239, 313
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	6 cut(s)	19, 237, 288, 447, 530, 670
CaiI	CAGNNNCTG	1 cut(s)	236
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	76, 530
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	4 cut(s)	315, 494, 589, 651
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	1 cut(s)	144
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	4 cut(s)	95, 141, 346, 412
DpnII	GATC	4 cut(s)	93, 139, 344, 410
DraI	TTTAAA	1 cut(s)	387
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	3 cut(s)	48, 114, 495
EarI	CTCTTC	3 cut(s)	48, 114, 495
Eco24I	GRGCYC	1 cut(s)	670
Eco57I	CTGAAG	2 cut(s)	138, 228
Eco91I	GGTNACC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	604
EcoRII	CCWGG	2 cut(s)	401, 551
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	670
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	4 cut(s)	318, 497, 592, 654
FaiI	YATR	8 cut(s)	8, 36, 168, 269, 316, 495, 590, 652
FatI	CATG	4 cut(s)	314, 493, 588, 650
FauI	CCCGC	1 cut(s)	521
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	7 cut(s)	24, 27, 30, 79, 227, 443, 655
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	7 cut(s)	24, 27, 30, 79, 227, 443, 655
FspBI	CTAG	2 cut(s)	177, 287
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	7 cut(s)	24, 27, 30, 79, 227, 443, 655
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	78, 522, 532
HapII	CCGG	1 cut(s)	221
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	318, 497, 592, 654
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	154, 416
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	616
Hpy166II	GTNNAC	2 cut(s)	196, 304
Hpy188I	TCNGA	2 cut(s)	65, 415
Hpy188III	TCNNGA	3 cut(s)	143, 221, 348
Hpy8I	GTNNAC	2 cut(s)	196, 304
HpyAV	CCTTC	4 cut(s)	142, 343, 595, 657
HpyCH4III	ACNGT	2 cut(s)	49, 308
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	5 cut(s)	239, 257, 314, 614, 654
HpyF10VI	GCNNNNNNNGC	8 cut(s)	23, 29, 87, 223, 232, 296, 631, 651
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	318, 497, 592, 654
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	4 cut(s)	93, 139, 344, 410
LmnI	GCTCC	3 cut(s)	14, 223, 512
Lsp1109I	GCAGC	5 cut(s)	16, 38, 213, 429, 666
LweI	GCATC	2 cut(s)	103, 301
MaeI	CTAG	2 cut(s)	177, 287
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	4 cut(s)	95, 141, 346, 412
MboI	GATC	4 cut(s)	93, 139, 344, 410
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	2 cut(s)	382, 388
Mly113I	GGCGCC	1 cut(s)	21
MnlI	CCTC	8 cut(s)	49, 51, 228, 401, 457, 475, 518, 657
Mph1103I	ATGCAT	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	2 cut(s)	386, 630
MslI	CAYNNNNRTG	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	403, 553
MvaI	CCWGG	2 cut(s)	403, 553
MwoI	GCNNNNNNNGC	8 cut(s)	23, 29, 87, 223, 232, 296, 631, 651
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	4 cut(s)	93, 139, 344, 410
NheI	GCTAGC	1 cut(s)	286
NlaIII	CATG	4 cut(s)	318, 497, 592, 654
NlaIV	GGNNCC	3 cut(s)	22, 346, 584
NmeAIII	GCCGAG	1 cut(s)	548
NmuCI	GTSAC	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	154, 416
PkrI	GCNGC	7 cut(s)	25, 28, 31, 80, 228, 444, 656
PluTI	GGCGCC	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	401, 551
PspEI	GGTNACC	1 cut(s)	604
PspGI	CCWGG	2 cut(s)	401, 551
PspN4I	GGNNCC	3 cut(s)	22, 346, 584
PspPI	GGNCC	2 cut(s)	76, 530
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	344
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	386, 630
SatI	GCNGC	7 cut(s)	24, 27, 30, 79, 227, 443, 655
Sau3AI	GATC	4 cut(s)	93, 139, 344, 410
Sau96I	GGNCC	2 cut(s)	76, 530
ScrFI	CCNGG	2 cut(s)	403, 553
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	103, 301
SfoI	GGCGCC	1 cut(s)	22
SmiI	ATTTAAAT	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	2 cut(s)	382, 388
SsiI	CCGC	3 cut(s)	24, 79, 528
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	2 cut(s)	177, 287
StyD4I	CCNGG	2 cut(s)	401, 551
SwaI	ATTTAAAT	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	49, 308
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	382, 388
TatI	WGTACW	1 cut(s)	636
TauI	GCSGC	2 cut(s)	26, 81
TfiI	GAWTC	2 cut(s)	154, 416
Tru1I	TTAA	2 cut(s)	386, 630
Tru9I	TTAA	2 cut(s)	386, 630
TscAI	CASTG	3 cut(s)	140, 246, 313
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	5 cut(s)	26, 29, 226, 442, 654
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	7 cut(s)	23, 471, 510, 528, 561, 605, 639
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	140, 246, 313
XapI	RAATTY	2 cut(s)	382, 388
XspI	CTAG	2 cut(s)	177, 287
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.