Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

3027250 .. 3030342

Gene Structure 3093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05060.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCCCTTTCGTCAGCCTCACGGACTCTTCCCCCTTTATCAAATTCGCTTTATTAATCCATTTCGTTCCGATTCAAATCCGTCCCATCTCTCTCTGTCTCCCACATGCCCACTCTCTCTCTCTCTCTCTCCTCCCTCCTCTCTCTCCTCTCAGACTCAGAGTCAGAGGTCAAAATATTTCCCAACCTTTCCCTCCTCTTTTTTTCCCCCTCTCTGCAATTGTGAAGACATGGACGGCGGTGCTCCGTACAACCCGCGCACGGTGGAGGAGGTCTTCCGAGACTTCAAAGGGCGGAGGGCCGGCATGATTAAAGCTCTCACCACCGAGGTCGAAGACTTTTTTCAGCAGTGTGACCCTGAGAAGGAAAATCTTTGCCTTTATGGATTTCCAAGCGAGCAGTGGGAGGTTAATTTGCCTGCGGAGGAGGTTCCCCCAGAGCTTCCGGAGCCAGCGCTTGGTATCAACTTTGCGAGAGATGGGATGCAAGAAAAGGACTGGTTATCCTTGGTTGCTGTCCACAGTGACGCATGGCTGCTTGCAGTGGCATTTTATTTTGGTGCTAGGTTTGGATTTGATAAGGCTGATAGGAAACGCCTTTTTAATATGATAAATGAACTTCCAACAATATTCGAGGTTGTGACAGGGACAGCCAAGAAACAAGTGAAGGAGAAGTCATCAAATTCAAATCATGGCAGCAACAGATCTAAGTCAAACTCTAAGCGAGGTTCTGAGCCTCAACCCAGGCATTCAAAGGCATTGCAATCAAAGGACGCAGAGGAGGACGAGGAAGAAGGTGTGGAAGATGAAGAAGAGGATGAGGATGAGCATGGGGAGACACTGTGTGGGGCCTGTGGAGAGAACTACGCAGCTGATGAGTTTTGGATTTGCTGCGATATCTGCGAGAAGTGGTTCCACGGTAAGTGTGTCAAGATCACGCCAGCAAGAGCCGAGCATATTAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAGCCAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

335

Amino Acids

37.85

Weight (kDa)

5.27

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	455
AccII	CGCG	1 cut(s)	256
AccIII	TCCGGA	1 cut(s)	442
AciI	CCGC	4 cut(s)	237, 254, 292, 419
AcsI	RAATTY	2 cut(s)	42, 679
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	2 cut(s)	248, 965
AfeI	AGCGCT	1 cut(s)	453
AfiI	CCNNNNNNNGG	3 cut(s)	259, 361, 455
AgsI	TTSAA	4 cut(s)	75, 286, 684, 750
AhdI	GACNNNNNGTC	1 cut(s)	159
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	3 cut(s)	314, 439, 869
AluI	AGCT	3 cut(s)	314, 439, 869
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	3 cut(s)	102, 273, 827
Aor13HI	TCCGGA	1 cut(s)	442
Aor51HI	AGCGCT	1 cut(s)	453
AoxI	GGCC	2 cut(s)	297, 846
ApeKI	GCWGC	5 cut(s)	532, 693, 866, 888, 981
ApoI	RAATTY	2 cut(s)	42, 679
AseI	ATTAAT	1 cut(s)	54
Asp700I	GAANNNNTTC	1 cut(s)	908
AspLEI	GCGC	2 cut(s)	258, 454
AspS9I	GGNCC	2 cut(s)	297, 846
AsuHPI	GGTGA	1 cut(s)	310
BbsI	GAAGAC	3 cut(s)	231, 265, 339
Bbv12I	GWGCWC	1 cut(s)	244
BbvI	GCAGC	5 cut(s)	519, 705, 875, 878, 993
BccI	CCATC	3 cut(s)	93, 470, 982
BceAI	ACGGC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	742
BcoDI	GTCTC	3 cut(s)	102, 273, 827
BfaI	CTAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	455
BglII	AGATCT	1 cut(s)	701
BisI	GCNGC	5 cut(s)	533, 694, 867, 889, 982
BlsI	GCNGC	5 cut(s)	534, 695, 868, 890, 983
Bme1390I	CCNGG	1 cut(s)	742
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	297, 846
BmiI	GGNNCC	4 cut(s)	429, 447, 847, 911
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	1 cut(s)	471
BpiI	GAAGAC	3 cut(s)	231, 265, 339
BsaBI	GATNNNNATC	1 cut(s)	75
BsaJI	CCNNGG	4 cut(s)	324, 504, 740, 913
BsaWI	WCCGGW	1 cut(s)	442
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 361, 455
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	500
Bse3DI	GCAATG	1 cut(s)	755
Bse8I	GATNNNNATC	1 cut(s)	75
BseAI	TCCGGA	1 cut(s)	442
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	4 cut(s)	324, 504, 740, 913
BseGI	GGATG	3 cut(s)	486, 820, 826
BseJI	GATNNNNATC	1 cut(s)	75
BseLI	CCNNNNNNNGG	3 cut(s)	259, 361, 455
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	4 cut(s)	164, 170, 348, 720
BseNI	ACTGG	1 cut(s)	500
BseRI	GAGGAG	7 cut(s)	120, 127, 136, 184, 281, 437, 791
BseXI	GCAGC	5 cut(s)	519, 705, 875, 878, 993
Bsh1236I	CGCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	299, 848
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	300, 443
BslFI	GGGAC	2 cut(s)	67, 658
BslI	CCNNNNNNNGG	3 cut(s)	259, 361, 455
BsmAI	GTCTC	3 cut(s)	102, 273, 827
BsmFI	GGGAC	2 cut(s)	67, 658
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	2 cut(s)	299, 848
Bsp1286I	GDGCHC	1 cut(s)	244
Bsp13I	TCCGGA	1 cut(s)	442
Bsp143I	GATC	2 cut(s)	701, 930
BspACI	CCGC	4 cut(s)	237, 254, 292, 419
BspANI	GGCC	2 cut(s)	299, 848
BspCNI	CTCAG	4 cut(s)	163, 169, 349, 721
BspEI	TCCGGA	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	4 cut(s)	429, 447, 847, 911
BsrDI	GCAATG	1 cut(s)	755
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	500
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	4 cut(s)	324, 504, 740, 913
BssMI	GATC	2 cut(s)	701, 930
BssT1I	CCWWGG	1 cut(s)	504
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	4 cut(s)	262, 521, 840, 917
Bst6I	CTCTTC	2 cut(s)	32, 804
BstC8I	GCNNGC	6 cut(s)	301, 395, 417, 450, 537, 939
BstDEI	CTNAG	6 cut(s)	150, 156, 357, 705, 717, 729
BstDSI	CCRYGG	1 cut(s)	913
BstF5I	GGATG	3 cut(s)	486, 820, 826
BstFNI	CGCG	1 cut(s)	256
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	2 cut(s)	258, 454
BstKTI	GATC	2 cut(s)	704, 933
BstMAI	GTCTC	3 cut(s)	102, 273, 827
BstMBI	GATC	2 cut(s)	701, 930
BstMWI	GCNNNNNNNGC	4 cut(s)	445, 897, 958, 978
BstNI	CCWGG	1 cut(s)	742
BstNSI	RCATGY	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	740
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	5 cut(s)	519, 705, 875, 878, 993
BstV2I	GAAGAC	3 cut(s)	231, 265, 339
BstX2I	RGATCY	1 cut(s)	701
BstYI	RGATCY	1 cut(s)	701
BsuRI	GGCC	2 cut(s)	299, 848
BtgI	CCRYGG	1 cut(s)	913
BtsCI	GGATG	3 cut(s)	486, 820, 826
BtsI	GCAGTG	3 cut(s)	353, 404, 546
BtsIMutI	CAGTG	5 cut(s)	353, 404, 526, 546, 836
Cac8I	GCNNGC	6 cut(s)	301, 395, 417, 450, 537, 939
CfoI	GCGC	2 cut(s)	258, 454
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	2 cut(s)	297, 846
CseI	GACGC	2 cut(s)	533, 779
Csp6I	GTAC	2 cut(s)	247, 964
CviAII	CATG	6 cut(s)	105, 229, 304, 528, 689, 827
CviQI	GTAC	2 cut(s)	247, 964
DdeI	CTNAG	6 cut(s)	150, 156, 357, 705, 717, 729
DpnI	GATC	2 cut(s)	703, 932
DpnII	GATC	2 cut(s)	701, 930
DraIII	CACNNNGTG	1 cut(s)	842
DriI	GACNNNNNGTC	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	32, 804
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EarI	CTCTTC	2 cut(s)	32, 804
EciI	GGCGGA	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	504
Eco32I	GATATC	1 cut(s)	895
Eco47III	AGCGCT	1 cut(s)	453
EcoO109I	RGGNCCY	1 cut(s)	846
EcoRII	CCWGG	1 cut(s)	740
EcoRV	GATATC	1 cut(s)	895
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	6 cut(s)	108, 232, 307, 531, 692, 830
FaiI	YATR	9 cut(s)	106, 230, 305, 381, 529, 605, 690, 828, 954
FaqI	GGGAC	2 cut(s)	67, 658
FatI	CATG	6 cut(s)	104, 228, 303, 527, 688, 826
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	5 cut(s)	533, 694, 867, 889, 982
FokI	GGATG	3 cut(s)	493, 827, 833
Fsp4HI	GCNGC	5 cut(s)	533, 694, 867, 889, 982
FspBI	CTAG	1 cut(s)	561
GlaI	GCGC	2 cut(s)	257, 453
GluI	GCNGC	5 cut(s)	533, 694, 867, 889, 982
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	2 cut(s)	299, 848
HapII	CCGG	2 cut(s)	300, 443
HgaI	GACGC	2 cut(s)	533, 779
HhaI	GCGC	2 cut(s)	258, 454
Hin1II	CATG	6 cut(s)	108, 232, 307, 531, 692, 830
Hin6I	GCGC	2 cut(s)	256, 452
HinP1I	GCGC	2 cut(s)	256, 452
HinfI	GANTC	4 cut(s)	24, 71, 154, 160
HpaII	CCGG	2 cut(s)	300, 443
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	6 cut(s)	70, 153, 159, 165, 278, 730
Hpy188III	TCNNGA	2 cut(s)	443, 928
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	355, 658, 785
HpyCH4III	ACNGT	4 cut(s)	262, 521, 840, 917
HpyCH4V	TGCA	5 cut(s)	216, 484, 539, 760, 981
HpyF10VI	GCNNNNNNNGC	4 cut(s)	445, 897, 958, 978
HpyF3I	CTNAG	6 cut(s)	150, 156, 357, 705, 717, 729
Hsp92II	CATG	6 cut(s)	108, 232, 307, 531, 692, 830
HspAI	GCGC	2 cut(s)	256, 452
Kpn2I	TCCGGA	1 cut(s)	442
KroI	GCCGGC	1 cut(s)	299
KroNI	GCCGGC	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	701, 930
LmnI	GCTCC	2 cut(s)	247, 445
Lsp1109I	GCAGC	5 cut(s)	519, 705, 875, 878, 993
LweI	GCATC	1 cut(s)	471
MaeI	CTAG	1 cut(s)	561
MaeIII	GTNAC	3 cut(s)	350, 521, 637
MalI	GATC	2 cut(s)	703, 932
MboI	GATC	2 cut(s)	701, 930
MboII	GAAGA	8 cut(s)	19, 236, 265, 344, 800, 812, 818, 821
MfeI	CAATTG	1 cut(s)	217
MflI	RGATCY	1 cut(s)	701
MhlI	GDGCHC	1 cut(s)	244
MluCI	AATT	4 cut(s)	42, 217, 409, 679
MlyI	GAGTC	3 cut(s)	18, 148, 169
MmeI	TCCRAC	1 cut(s)	644
MroI	TCCGGA	1 cut(s)	442
MroNI	GCCGGC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	908
MseI	TTAA	5 cut(s)	54, 309, 408, 600, 957
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	2 cut(s)	300, 443
MspR9I	CCNGG	1 cut(s)	742
MunI	CAATTG	1 cut(s)	217
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	4 cut(s)	445, 897, 958, 978
NaeI	GCCGGC	1 cut(s)	301
NdeII	GATC	2 cut(s)	701, 930
NgoMIV	GCCGGC	1 cut(s)	299
NlaIII	CATG	6 cut(s)	108, 232, 307, 531, 692, 830
NlaIV	GGNNCC	4 cut(s)	429, 447, 847, 911
NmeAIII	GCCGAG	1 cut(s)	973
NmuCI	GTSAC	3 cut(s)	350, 521, 637
NspI	RCATGY	1 cut(s)	108
PctI	GAATGC	1 cut(s)	745
PdiI	GCCGGC	1 cut(s)	301
PdmI	GAANNNNTTC	1 cut(s)	908
PfeI	GAWTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	455
PkrI	GCNGC	5 cut(s)	534, 695, 868, 890, 983
PleI	GAGTC	3 cut(s)	18, 148, 168
PpsI	GAGTC	3 cut(s)	18, 148, 168
PshBI	ATTAAT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	740
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	4 cut(s)	429, 447, 847, 911
PspPI	GGNCC	2 cut(s)	297, 846
PsuI	RGATCY	1 cut(s)	701
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	2 cut(s)	248, 965
RsaNI	GTAC	2 cut(s)	247, 964
SaqAI	TTAA	5 cut(s)	54, 309, 408, 600, 957
SatI	GCNGC	5 cut(s)	533, 694, 867, 889, 982
Sau3AI	GATC	2 cut(s)	701, 930
Sau96I	GGNCC	2 cut(s)	297, 846
SchI	GAGTC	3 cut(s)	18, 148, 169
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	1 cut(s)	244
SfaNI	GCATC	1 cut(s)	471
Sse9I	AATT	4 cut(s)	42, 217, 409, 679
SsiI	CCGC	4 cut(s)	237, 254, 292, 419
SspI	AATATT	2 cut(s)	176, 627
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	1 cut(s)	740
StyI	CCWWGG	1 cut(s)	504
TaaI	ACNGT	4 cut(s)	262, 521, 840, 917
TaqI	TCGA	2 cut(s)	330, 630
TasI	AATT	4 cut(s)	42, 217, 409, 679
TatI	WGTACW	1 cut(s)	963
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	5 cut(s)	54, 309, 408, 600, 957
Tru9I	TTAA	5 cut(s)	54, 309, 408, 600, 957
TscAI	CASTG	5 cut(s)	353, 404, 526, 546, 843
TseFI	GTSAC	3 cut(s)	350, 521, 637
TseI	GCWGC	5 cut(s)	532, 693, 866, 888, 981
Tsp45I	GTSAC	3 cut(s)	350, 521, 637
TspDTI	ATGAA	2 cut(s)	627, 819
TspGWI	ACGGA	3 cut(s)	36, 69, 234
TspRI	CASTG	5 cut(s)	353, 404, 526, 546, 843
Van91I	CCANNNNNTGG	1 cut(s)	455
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	2 cut(s)	42, 679
XceI	RCATGY	1 cut(s)	108
XcmI	CCANNNNNNNNNTGG	1 cut(s)	396
XmnI	GAANNNNTTC	1 cut(s)	908
XspI	CTAG	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.