Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Forward (+)

35708170 .. 35711085

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G406800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACGGGGGTGCTCTGTACAACCCGCGTACGGTTGAGGAGGTCTTCAGAGACTTCAAGGGTCGAAGAGCCGCCATGATTAAAGCTCTCACCACCGAGGTCGAAGACTTTTTTCAGCAGTGTGACCCTGAGAAGGAGAATCTTTGCCTTTATGGATTTCCAACCGAGCAGTGGGAAGTTAATTTACCAGCAGAGGAGGTTCCTCCAGAGCTTCCGGAGCCAGCACTTGGTATTAACTTTGCAAGAGATGGAATGCAAGAAAAGGATTGGTTATCTTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGCAGTGGCATTTTATTTTGGTGCTAGGTTCGGATTTGATAAGGCTGATAGGAAACGCCTTTTTAATATGATAAATGAACTTCCAACAATTTTCGAGGTTGTGACAGGGACAGTTAAGAAACAAGTGAAGGAGAAGTCATCAAATTCAAATCATGGCAGCAACAGATCTAAATCAAACTCTAAGCGTGGTTCTGAGCCTCATCCCAGGTATACAAAGGCAGTGCAATCAAAGGATGAGGACGAGGAGGGTCTGGAAGATGACGATGAGGACGAGCATGGTGAGACACTGTGTGGGGCTTGTGGAGAGAACTACGCATCTGATGAATTCTGGATTTGCTGCGACATCTGTGAGAAGTGGTTCCATGGGAAGTGCGTTAAGATCACCCCAGCTAGGGCTGAGCATATTAAGCAGTACAAATGCCCATCTTGCACCAACAAGAGAGCCCGGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

254

Amino Acids

28.81

Weight (kDa)

5.16

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	227
AccI	GTMKAC	1 cut(s)	518
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	2 cut(s)	26, 72
AcsI	RAATTY	2 cut(s)	451, 632
AcuI	CTGAAG	1 cut(s)	31
AdeI	CACNNNGTG	1 cut(s)	599
AfaI	GTAC	3 cut(s)	20, 31, 722
AfiI	CCNNNNNNNGG	6 cut(s)	31, 133, 171, 227, 699, 700
AgsI	TTSAA	2 cut(s)	58, 456
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	3 cut(s)	86, 211, 698
AluI	AGCT	3 cut(s)	86, 211, 698
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	2 cut(s)	45, 584
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	755
ApeKI	GCWGC	2 cut(s)	465, 645
ApoI	RAATTY	2 cut(s)	451, 632
Asp700I	GAANNNNTTC	1 cut(s)	665
AsuC2I	CCSGG	1 cut(s)	754
AsuHPI	GGTGA	3 cut(s)	82, 599, 682
BanII	GRGCYC	1 cut(s)	754
BarI	GAAGNNNNNNTAC	2 cut(s)	168, 200
BbsI	GAAGAC	2 cut(s)	37, 111
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	477, 632
BccI	CCATC	2 cut(s)	242, 739
BciT130I	CCWGG	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	754
BcoDI	GTCTC	2 cut(s)	45, 584
BfaI	CTAG	2 cut(s)	333, 699
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	3 cut(s)	72, 466, 646
BlpI	GCTNAGC	1 cut(s)	705
BlsI	GCNGC	3 cut(s)	73, 467, 647
Bme1390I	CCNGG	2 cut(s)	514, 754
BmiI	GGNNCC	3 cut(s)	201, 219, 668
BmrFI	CCNGG	2 cut(s)	514, 754
BmsI	GCATC	2 cut(s)	286, 632
BpiI	GAAGAC	2 cut(s)	37, 111
BpmI	CTGGAG	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	705
BpuMI	CCSGG	1 cut(s)	754
BsaBI	GATNNNNATC	1 cut(s)	478
BsaJI	CCNNGG	3 cut(s)	96, 512, 670
BsaWI	WCCGGW	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	6 cut(s)	31, 133, 171, 227, 699, 700
Bse8I	GATNNNNATC	1 cut(s)	478
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	3 cut(s)	96, 512, 670
BseGI	GGATG	2 cut(s)	508, 547
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	6 cut(s)	31, 133, 171, 227, 699, 700
BseMII	CTCAG	3 cut(s)	120, 492, 696
BseRI	GAGGAG	3 cut(s)	53, 209, 566
BseXI	GCAGC	2 cut(s)	477, 632
BseYI	CCCAGC	1 cut(s)	694
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	1 cut(s)	757
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	215, 754
BsiWI	CGTACG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	6 cut(s)	31, 133, 171, 227, 699, 700
BsmAI	GTCTC	2 cut(s)	45, 584
BsmFI	GGGAC	1 cut(s)	430
BsmI	GAATGC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	757
Bsp1286I	GDGCHC	2 cut(s)	16, 754
Bsp13I	TCCGGA	1 cut(s)	214
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	473, 687
Bsp1720I	GCTNAGC	1 cut(s)	705
Bsp19I	CCATGG	1 cut(s)	670
BspACI	CCGC	2 cut(s)	26, 72
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	3 cut(s)	121, 493, 697
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	3 cut(s)	201, 219, 668
BspQI	GCTCTTC	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	18
BssECI	CCNNGG	3 cut(s)	96, 512, 670
BssMI	GATC	2 cut(s)	473, 687
BssNAI	GTATAC	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	670
Bst1107I	GTATAC	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	4 cut(s)	34, 293, 421, 597
Bst6I	CTCTTC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	4 cut(s)	129, 489, 501, 705
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	2 cut(s)	508, 547
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	476, 690
BstMAI	GTCTC	2 cut(s)	45, 584
BstMBI	GATC	2 cut(s)	473, 687
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 715, 735
BstNI	CCWGG	1 cut(s)	514
BstSCI	CCNGG	2 cut(s)	512, 752
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	2 cut(s)	477, 632
BstV2I	GAAGAC	2 cut(s)	37, 111
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
BstZ17I	GTATAC	1 cut(s)	519
BsuRI	GGCC	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	508, 547
BtsI	GCAGTG	4 cut(s)	125, 176, 318, 534
BtsIMutI	CAGTG	6 cut(s)	125, 176, 298, 318, 534, 593
Cac8I	GCNNGC	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	19, 30, 721
CviAII	CATG	5 cut(s)	76, 300, 461, 584, 671
CviQI	GTAC	3 cut(s)	19, 30, 721
DdeI	CTNAG	4 cut(s)	129, 489, 501, 705
DpnI	GATC	2 cut(s)	475, 689
DpnII	GATC	2 cut(s)	473, 687
DraIII	CACNNNGTG	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	670
Eco24I	GRGCYC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	31
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	1 cut(s)	301
EcoT38I	GRGCYC	1 cut(s)	754
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	5 cut(s)	79, 303, 464, 587, 674
FaiI	YATR	9 cut(s)	77, 153, 301, 377, 462, 519, 585, 672, 711
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	5 cut(s)	75, 299, 460, 583, 670
FauI	CCCGC	1 cut(s)	33
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	3 cut(s)	72, 466, 646
FokI	GGATG	2 cut(s)	495, 554
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	3 cut(s)	72, 466, 646
FspBI	CTAG	2 cut(s)	333, 699
GluI	GCNGC	3 cut(s)	72, 466, 646
GsaI	CCCAGC	1 cut(s)	698
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	757
HapII	CCGG	2 cut(s)	215, 754
Hin1II	CATG	5 cut(s)	79, 303, 464, 587, 674
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	215, 754
HphI	GGTGA	3 cut(s)	82, 599, 682
Hpy166II	GTNNAC	2 cut(s)	289, 519
Hpy188I	TCNGA	4 cut(s)	50, 341, 502, 628
Hpy188III	TCNNGA	4 cut(s)	206, 215, 560, 637
Hpy8I	GTNNAC	2 cut(s)	289, 519
HpyAV	CCTTC	2 cut(s)	127, 430
HpyCH4III	ACNGT	4 cut(s)	34, 293, 421, 597
HpyCH4V	TGCA	6 cut(s)	242, 256, 299, 311, 532, 738
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 715, 735
HpyF3I	CTNAG	4 cut(s)	129, 489, 501, 705
Hsp92II	CATG	5 cut(s)	79, 303, 464, 587, 674
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	473, 687
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	217
Lsp1109I	GCAGC	2 cut(s)	477, 632
LweI	GCATC	2 cut(s)	286, 632
MaeI	CTAG	2 cut(s)	333, 699
MaeIII	GTNAC	3 cut(s)	122, 303, 409
MalI	GATC	2 cut(s)	475, 689
MboI	GATC	2 cut(s)	473, 687
MboII	GAAGA	4 cut(s)	37, 78, 116, 575
MflI	RGATCY	1 cut(s)	473
MhlI	GDGCHC	2 cut(s)	16, 754
MluCI	AATT	4 cut(s)	181, 396, 451, 632
MmeI	TCCRAC	2 cut(s)	185, 416
Mph1103I	ATGCAT	1 cut(s)	301
MroI	TCCGGA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	665
MseI	TTAA	8 cut(s)	81, 180, 234, 372, 423, 684, 714, 760
MslI	CAYNNNNRTG	1 cut(s)	294
MspI	CCGG	2 cut(s)	215, 754
MspR9I	CCNGG	2 cut(s)	514, 754
Mva1269I	GAATGC	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	217, 715, 735
NciI	CCSGG	1 cut(s)	754
NcoI	CCATGG	1 cut(s)	670
NdeII	GATC	2 cut(s)	473, 687
NlaIII	CATG	5 cut(s)	79, 303, 464, 587, 674
NlaIV	GGNNCC	3 cut(s)	201, 219, 668
NmuCI	GTSAC	2 cut(s)	122, 409
NsiI	ATGCAT	1 cut(s)	301
PciSI	GCTCTTC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	1 cut(s)	576
PctI	GAATGC	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	139
Pfl23II	CGTACG	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	3 cut(s)	73, 467, 647
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	512
PspLI	CGTACG	1 cut(s)	29
PspN4I	GGNNCC	3 cut(s)	201, 219, 668
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	3 cut(s)	20, 31, 722
RsaNI	GTAC	3 cut(s)	19, 30, 721
RseI	CAYNNNNRTG	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	8 cut(s)	81, 180, 234, 372, 423, 684, 714, 760
SatI	GCNGC	3 cut(s)	72, 466, 646
Sau3AI	GATC	2 cut(s)	473, 687
ScrFI	CCNGG	2 cut(s)	514, 754
SduI	GDGCHC	2 cut(s)	16, 754
SetI	ASST	9 cut(s)	45, 88, 102, 201, 213, 338, 408, 518, 700
SfaNI	GCATC	2 cut(s)	286, 632
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	4 cut(s)	181, 396, 451, 632
SsiI	CCGC	2 cut(s)	26, 72
SspMI	CTAG	2 cut(s)	333, 699
StyD4I	CCNGG	2 cut(s)	512, 752
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	4 cut(s)	34, 293, 421, 597
TaqI	TCGA	3 cut(s)	64, 102, 402
TasI	AATT	4 cut(s)	181, 396, 451, 632
TatI	WGTACW	2 cut(s)	18, 720
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	8 cut(s)	81, 180, 234, 372, 423, 684, 714, 760
Tru9I	TTAA	8 cut(s)	81, 180, 234, 372, 423, 684, 714, 760
TscAI	CASTG	6 cut(s)	125, 176, 298, 318, 534, 600
TseFI	GTSAC	2 cut(s)	122, 409
TseI	GCWGC	2 cut(s)	465, 645
Tsp45I	GTSAC	2 cut(s)	122, 409
TspDTI	ATGAA	2 cut(s)	399, 645
TspRI	CASTG	6 cut(s)	125, 176, 298, 318, 534, 600
Van91I	CCANNNNNTGG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	451, 632
XcmI	CCANNNNNNNNNTGG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	518
XmnI	GAANNNNTTC	1 cut(s)	665
XspI	CTAG	2 cut(s)	333, 699
Zsp2I	ATGCAT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.