Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

4318380 .. 4326879

Gene Structure 8500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05690.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCGAGCCTCCGTTTCGTTCCGATTCAAATCCGCATCTCTCTCTGTCTCTCTCTACACGCCCACACTCTCTCTCCTCCCAAACTCTCTGAGTAAAGAGGTCAAATATTTCCCAACCTTTCCCTCCCATTTTTTCCCACTTACTCTATCTCTCCGCAATTGTGAAGGCATGGACGGCGGTGCTTTGTACAACCCGCGCACGGTGGAGGAGGTCTTCAGAGACTTCAAAGGGCGGAGGGCCGGCATGATTAAAGCTCTCACCACCGAGGTCGAAGACTTTTTTCAGCAGTGCGACCCTGAGAAGGAAAATCTTTGCCTTTATGGATTCCCAACTGAGCAGTGGGAAGTTAATTTGCCTGCGGAGGAGGTTCCTCCAGAGCTTCCGGAGCCAGCACTTGGTATCAACTTTGCAAGAGATGGGATGCAAGAAAAGGACTGGTTATCCTTGGTTGCTGTCCACAGTGATGCCTGGTTGCTTGCGGTGGCATTTTATTTCGGTGCGAGGTTTGGATTTGATAAGGCTGATAGGAAACGCCTTTTTAATATGATAAATGAACTTCCAACAATATTCGAGGTTGTGACAGGGACAGCCAAGAAACAAGTCAAGGAGAAGTCATCAAATTCAAATCATGGCAGCAACAGATCTAAGTCAAACTCTAAGCGAGGTTCTGAGCCTCAACCCAGGTATTCAAAGGCATTGCAGTCAAAGGATGCGGAGGAGAACGAGGAAGAAGGTTTGGAAGATGAAGACGAGGATGAGCACGGCGAGACACTGTGTGGGGCTTGTGGAGAAAACTACGCATCTGATGAATTTTGGATTTGCTGCGACATCTGCGAGAAGTGGTTCCACGGTAAGTGTGTCAAGATCGACCCCAGCAAGAGCCGAGCATATCAAGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAGCCAAACATTGATGGTTTTCCTGGGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

320

Amino Acids

36.18

Weight (kDa)

5.09

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccII	CGCG	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	8 cut(s)	33, 154, 177, 194, 232, 359, 479, 713
AcsI	RAATTY	2 cut(s)	619, 809
AcuI	CTGAAG	1 cut(s)	199
AdeI	CACNNNGTG	1 cut(s)	776
AfaI	GTAC	2 cut(s)	188, 900
AfiI	CCNNNNNNNGG	3 cut(s)	199, 301, 395
AgsI	TTSAA	4 cut(s)	28, 226, 624, 690
AjnI	CCWGG	3 cut(s)	467, 680, 948
AluBI	AGCT	2 cut(s)	254, 379
AluI	AGCT	2 cut(s)	254, 379
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	3 cut(s)	52, 213, 761
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	633, 822, 916
ApoI	RAATTY	2 cut(s)	619, 809
Asp700I	GAANNNNTTC	1 cut(s)	842
AspLEI	GCGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	250
BbsI	GAAGAC	3 cut(s)	205, 279, 753
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	3 cut(s)	645, 809, 928
BccI	CCATC	3 cut(s)	410, 917, 934
BceAI	ACGGC	2 cut(s)	190, 778
BciT130I	CCWGG	3 cut(s)	469, 682, 950
BcoDI	GTCTC	3 cut(s)	52, 213, 761
BglII	AGATCT	1 cut(s)	641
BisI	GCNGC	3 cut(s)	634, 823, 917
BlsI	GCNGC	3 cut(s)	635, 824, 918
Bme1390I	CCNGG	3 cut(s)	469, 682, 950
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	3 cut(s)	369, 387, 845
BmrFI	CCNGG	3 cut(s)	469, 682, 950
BmsI	GCATC	5 cut(s)	44, 411, 454, 700, 809
BpiI	GAAGAC	3 cut(s)	205, 279, 753
BpmI	CTGGAG	1 cut(s)	357
BsaBI	GATNNNNATC	1 cut(s)	28
BsaJI	CCNNGG	5 cut(s)	264, 444, 680, 847, 949
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bsc4I	CCNNNNNNNGG	3 cut(s)	199, 301, 395
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	695
Bse8I	GATNNNNATC	1 cut(s)	28
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	3 cut(s)	469, 682, 950
BseDI	CCNNGG	5 cut(s)	264, 444, 680, 847, 949
BseGI	GGATG	3 cut(s)	426, 715, 760
BseJI	GATNNNNATC	1 cut(s)	28
BseLI	CCNNNNNNNGG	3 cut(s)	199, 301, 395
BseMI	GCAATG	1 cut(s)	695
BseMII	CTCAG	4 cut(s)	80, 288, 324, 660
BseNI	ACTGG	1 cut(s)	440
BseRI	GAGGAG	4 cut(s)	65, 221, 377, 731
BseXI	GCAGC	3 cut(s)	645, 809, 928
BseYI	CCCAGC	1 cut(s)	872
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	240, 383
BslFI	GGGAC	1 cut(s)	598
BslI	CCNNNNNNNGG	3 cut(s)	199, 301, 395
BsmAI	GTCTC	3 cut(s)	52, 213, 761
BsmFI	GGGAC	1 cut(s)	598
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	762
Bsp13I	TCCGGA	1 cut(s)	382
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	2 cut(s)	641, 864
BspACI	CCGC	8 cut(s)	33, 154, 177, 194, 232, 359, 479, 713
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	4 cut(s)	81, 289, 325, 661
BspEI	TCCGGA	1 cut(s)	382
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	369, 387, 845
BsrDI	GCAATG	1 cut(s)	695
BsrFI	RCCGGY	1 cut(s)	239
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	5 cut(s)	264, 444, 680, 847, 949
BssMI	GATC	2 cut(s)	641, 864
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	3 cut(s)	469, 682, 950
Bst4CI	ACNGT	4 cut(s)	202, 461, 774, 851
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	5 cut(s)	6, 241, 357, 390, 477
BstDEI	CTNAG	6 cut(s)	89, 297, 333, 645, 657, 669
BstDSI	CCRYGG	1 cut(s)	847
BstF5I	GGATG	3 cut(s)	426, 715, 760
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	644, 867
BstMAI	GTCTC	3 cut(s)	52, 213, 761
BstMBI	GATC	2 cut(s)	641, 864
BstMWI	GCNNNNNNNGC	5 cut(s)	174, 385, 831, 893, 913
BstNI	CCWGG	3 cut(s)	469, 682, 950
BstSCI	CCNGG	3 cut(s)	467, 680, 948
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	3 cut(s)	645, 809, 928
BstV2I	GAAGAC	3 cut(s)	205, 279, 753
BstX2I	RGATCY	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	641
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	847
BtsCI	GGATG	3 cut(s)	426, 715, 760
BtsI	GCAGTG	2 cut(s)	293, 344
BtsIMutI	CAGTG	4 cut(s)	293, 344, 466, 770
Cac8I	GCNNGC	5 cut(s)	6, 241, 357, 390, 477
CfoI	GCGC	1 cut(s)	198
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	187, 899
CviAII	CATG	3 cut(s)	169, 244, 629
CviQI	GTAC	2 cut(s)	187, 899
DdeI	CTNAG	6 cut(s)	89, 297, 333, 645, 657, 669
DpnI	GATC	2 cut(s)	643, 866
DpnII	GATC	2 cut(s)	641, 864
DraIII	CACNNNGTG	1 cut(s)	776
EciI	GGCGGA	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	444
Eco57I	CTGAAG	1 cut(s)	199
EcoRII	CCWGG	3 cut(s)	467, 680, 948
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	3 cut(s)	172, 247, 632
FaiI	YATR	6 cut(s)	170, 245, 321, 545, 630, 889
FaqI	GGGAC	1 cut(s)	598
FatI	CATG	3 cut(s)	168, 243, 628
FauI	CCCGC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	634, 823, 917
FokI	GGATG	3 cut(s)	433, 722, 767
Fsp4HI	GCNGC	3 cut(s)	634, 823, 917
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	3 cut(s)	634, 823, 917
GsaI	CCCAGC	1 cut(s)	876
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	240, 383
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	3 cut(s)	172, 247, 632
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	24, 324
HpaII	CCGG	2 cut(s)	240, 383
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	5 cut(s)	23, 90, 218, 670, 805
Hpy188III	TCNNGA	3 cut(s)	374, 383, 862
Hpy8I	GTNNAC	1 cut(s)	457
HpyAV	CCTTC	3 cut(s)	158, 295, 725
HpyCH4III	ACNGT	4 cut(s)	202, 461, 774, 851
HpyCH4V	TGCA	4 cut(s)	410, 424, 700, 916
HpyF10VI	GCNNNNNNNGC	5 cut(s)	174, 385, 831, 893, 913
HpyF3I	CTNAG	6 cut(s)	89, 297, 333, 645, 657, 669
Hsp92II	CATG	3 cut(s)	172, 247, 632
HspAI	GCGC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	2 cut(s)	641, 864
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	3 cut(s)	645, 809, 928
LweI	GCATC	5 cut(s)	44, 411, 454, 700, 809
MaeIII	GTNAC	1 cut(s)	577
MalI	GATC	2 cut(s)	643, 866
MboI	GATC	2 cut(s)	641, 864
MboII	GAAGA	5 cut(s)	205, 284, 740, 752, 758
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	641
MhlI	GDGCHC	1 cut(s)	762
MluCI	AATT	4 cut(s)	157, 349, 619, 809
MmeI	TCCRAC	1 cut(s)	584
MroI	TCCGGA	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	842
MseI	TTAA	3 cut(s)	249, 348, 540
MslI	CAYNNNNRTG	1 cut(s)	462
MspI	CCGG	2 cut(s)	240, 383
MspR9I	CCNGG	3 cut(s)	469, 682, 950
MunI	CAATTG	1 cut(s)	157
MvaI	CCWGG	3 cut(s)	469, 682, 950
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	5 cut(s)	174, 385, 831, 893, 913
NaeI	GCCGGC	1 cut(s)	241
NdeII	GATC	2 cut(s)	641, 864
NgoMIV	GCCGGC	1 cut(s)	239
NlaIII	CATG	3 cut(s)	172, 247, 632
NlaIV	GGNNCC	3 cut(s)	369, 387, 845
NmeAIII	GCCGAG	1 cut(s)	908
NmuCI	GTSAC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	24, 324
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	3 cut(s)	635, 824, 918
Psp6I	CCWGG	3 cut(s)	467, 680, 948
PspFI	CCCAGC	1 cut(s)	872
PspGI	CCWGG	3 cut(s)	467, 680, 948
PspN4I	GGNNCC	3 cut(s)	369, 387, 845
PspPI	GGNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	641
RsaI	GTAC	2 cut(s)	188, 900
RsaNI	GTAC	2 cut(s)	187, 899
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	249, 348, 540
SatI	GCNGC	3 cut(s)	634, 823, 917
Sau3AI	GATC	2 cut(s)	641, 864
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	3 cut(s)	469, 682, 950
SduI	GDGCHC	1 cut(s)	762
SfaNI	GCATC	5 cut(s)	44, 411, 454, 700, 809
SmiMI	CAYNNNNRTG	1 cut(s)	462
Sse9I	AATT	4 cut(s)	157, 349, 619, 809
SsiI	CCGC	8 cut(s)	33, 154, 177, 194, 232, 359, 479, 713
SspI	AATATT	2 cut(s)	107, 567
StyD4I	CCNGG	3 cut(s)	467, 680, 948
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	4 cut(s)	202, 461, 774, 851
TaqI	TCGA	3 cut(s)	270, 570, 867
TasI	AATT	4 cut(s)	157, 349, 619, 809
TatI	WGTACW	2 cut(s)	186, 898
TfiI	GAWTC	2 cut(s)	24, 324
Tru1I	TTAA	3 cut(s)	249, 348, 540
Tru9I	TTAA	3 cut(s)	249, 348, 540
TscAI	CASTG	4 cut(s)	293, 344, 466, 777
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	3 cut(s)	633, 822, 916
Tsp45I	GTSAC	1 cut(s)	577
TspDTI	ATGAA	3 cut(s)	567, 759, 822
TspRI	CASTG	4 cut(s)	293, 344, 466, 777
Van91I	CCANNNNNTGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	619, 809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	336
XmnI	GAANNNNTTC	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.