Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

62278414 .. 62282002

Gene Structure 3589 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51461

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCTATGAACGGAGCTGGCGCCGCAGCAGCAGCAGCAGCCTATAATCCTCGCACCGTTGAAGAGGTTTTCCGAGATTTCAAGGGCCGCCGGACTGGCTTGATCAAGGCTCTAACCACTGATGCTGAAGAGTTCCATCAGCAGTGTGATCCTGAGAAGGAGAATCTTTCCTTGTATGGATACCCTAGTGAGCAATGGGAAGTCAACTTACCTGCTGAAGAAGTGCCTCCGGAGCTGCCAGAGCCTGCACTGGGTATCAACTTTGCAAGAGATGGTATGGCAGAAAAGGACTGGCTAGCTTTGGTTGCTGTCCACAGTGATGCATGGCTACTTTCTGTTGCCTTCTATTTTGGATCCAGATTTGGGTTCGATAAGGTTGATAGGAAGAAACTTTTTAGCATGATAAATGAACTTCCAACAATATTTGAAGTTGTGACTGGTACTGCAAAGAAGGAAGTAAAGGAGAAGCCATCTTCAAACCACGGTAGCAACAAATCCAAGTCAAACTCCAAAGCGAGAGGATCAGAATCCCAAGCAAGACATTTGGAAGTGCTGCCAGCAAAAGATGAAGATGAGGGGTTAGACGAAGATGAGGAAGACGAACATGAAGAAGAGACTTGTGGAGCTTGTGGCCGAGGCGGGCCATCTTCATTAGATGAACCCTGGATTTTGTGTGATTTCTGTGAGACGTGGTTCCACATGAAGTGTGTGAAGGTGACCCCTGCAAAAGCAAAGCAGATTAAGCAGTACAAATGCCCTTCATGCAGCAACAAGAGGGCTCGCCCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

263

Amino Acids

29.29

Weight (kDa)

5.17

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alfin	PF12165	19 - 146	6.5e-66	Alfin
PHD	PF00628	207 - 255	2.9e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccB1I	GGYRCC	1 cut(s)	20
AccIII	TCCGGA	1 cut(s)	229
AciI	CCGC	3 cut(s)	24, 88, 639
AclWI	GGATC	4 cut(s)	143, 348, 361, 529
AcoI	YGGCCR	1 cut(s)	631
AcuI	CTGAAG	2 cut(s)	147, 237
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	442, 749
AfiI	CCNNNNNNNGG	2 cut(s)	251, 363
AgsI	TTSAA	4 cut(s)	62, 82, 428, 477
AjiI	CACGTC	1 cut(s)	690
AjnI	CCWGG	1 cut(s)	662
AluBI	AGCT	4 cut(s)	17, 235, 299, 626
AluI	AGCT	4 cut(s)	17, 235, 299, 626
Alw26I	GTCTC	2 cut(s)	608, 680
AlwI	GGATC	4 cut(s)	143, 348, 361, 529
AlwNI	CAGNNNCTG	1 cut(s)	245
Aor13HI	TCCGGA	1 cut(s)	229
AoxI	GGCC	3 cut(s)	85, 631, 641
ApeKI	GCWGC	8 cut(s)	26, 29, 32, 35, 38, 235, 553, 765
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	85, 641
AsuHPI	GGTGA	1 cut(s)	727
AsuNHI	GCTAGC	1 cut(s)	295
BaeI	ACNNNNGTAYC	2 cut(s)	172, 205
BamHI	GGATCC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	20
BanII	GRGCYC	1 cut(s)	781
BarI	GAAGNNNNNNTAC	2 cut(s)	192, 224
BbsI	GAAGAC	1 cut(s)	603
BbvI	GCAGC	8 cut(s)	38, 41, 44, 47, 50, 222, 540, 777
BccI	CCATC	4 cut(s)	144, 266, 478, 652
BciT130I	CCWGG	1 cut(s)	664
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	608, 680
BfaI	CTAG	2 cut(s)	186, 296
BfoI	RGCGCY	1 cut(s)	24
BfuAI	ACCTGC	1 cut(s)	220
BfuI	GTATCC	1 cut(s)	173
BglI	GCCNNNNNGGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	664
BmgBI	CACGTC	1 cut(s)	690
BmgT120I	GGNCC	2 cut(s)	85, 641
BmiI	GGNNCC	3 cut(s)	22, 355, 695
BmrFI	CCNGG	1 cut(s)	664
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	2 cut(s)	112, 310
BmtI	GCTAGC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	526
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	3 cut(s)	481, 634, 662
BsaWI	WCCGGW	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	2 cut(s)	251, 363
Bse1I	ACTGG	4 cut(s)	100, 255, 296, 442
Bse3DI	GCAATG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	526
BseAI	TCCGGA	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	3 cut(s)	481, 634, 662
BseJI	GATNNNNATC	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	251, 363
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	144
BseNI	ACTGG	4 cut(s)	100, 255, 296, 442
BseXI	GCAGC	8 cut(s)	38, 41, 44, 47, 50, 222, 540, 777
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	87, 633, 643
BshNI	GGYRCC	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	91, 230
BslI	CCNNNNNNNGG	2 cut(s)	251, 363
BsmAI	GTCTC	2 cut(s)	608, 680
BsmBI	CGTCTC	1 cut(s)	680
BsnI	GGCC	3 cut(s)	87, 633, 643
Bsp1286I	GDGCHC	1 cut(s)	781
Bsp13I	TCCGGA	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	102, 148, 353, 521
BspACI	CCGC	3 cut(s)	24, 88, 639
BspANI	GGCC	3 cut(s)	87, 633, 643
BspCNI	CTCAG	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	22, 355, 695
BspMI	ACCTGC	1 cut(s)	220
BspOI	GCTAGC	1 cut(s)	299
BspPI	GGATC	4 cut(s)	143, 348, 361, 529
BspT107I	GGYRCC	1 cut(s)	20
BsrDI	GCAATG	1 cut(s)	200
BsrI	ACTGG	4 cut(s)	100, 255, 296, 442
BssECI	CCNNGG	3 cut(s)	481, 634, 662
BssMI	GATC	4 cut(s)	102, 148, 353, 521
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	58, 317, 485
Bst6I	CTCTTC	3 cut(s)	57, 123, 606
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	6 cut(s)	19, 246, 297, 558, 641, 781
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	481
BstEII	GGTNACC	1 cut(s)	715
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	4 cut(s)	105, 151, 356, 524
BstMAI	GTCTC	2 cut(s)	608, 680
BstMBI	GATC	4 cut(s)	102, 148, 353, 521
BstNI	CCWGG	1 cut(s)	664
BstPI	GGTNACC	1 cut(s)	715
BstSCI	CCNGG	1 cut(s)	662
BstV1I	GCAGC	8 cut(s)	38, 41, 44, 47, 50, 222, 540, 777
BstV2I	GAAGAC	1 cut(s)	603
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	87, 633, 643
BtgI	CCRYGG	1 cut(s)	481
BtrI	CACGTC	1 cut(s)	690
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	4 cut(s)	117, 149, 248, 322
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	6 cut(s)	19, 246, 297, 558, 641, 781
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	85, 641
Csp6I	GTAC	2 cut(s)	441, 748
CviAII	CATG	5 cut(s)	324, 400, 605, 700, 762
CviQI	GTAC	2 cut(s)	441, 748
DdeI	CTNAG	1 cut(s)	153
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	4 cut(s)	104, 150, 355, 523
DpnII	GATC	4 cut(s)	102, 148, 353, 521
EaeI	YGGCCR	1 cut(s)	631
Eam1104I	CTCTTC	3 cut(s)	57, 123, 606
EarI	CTCTTC	3 cut(s)	57, 123, 606
Eco24I	GRGCYC	1 cut(s)	781
Eco57I	CTGAAG	2 cut(s)	147, 237
Eco91I	GGTNACC	1 cut(s)	715
EcoO65I	GGTNACC	1 cut(s)	715
EcoRII	CCWGG	1 cut(s)	662
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	781
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
Esp3I	CGTCTC	1 cut(s)	680
FaeI	CATG	5 cut(s)	327, 403, 608, 703, 765
FaiI	YATR	9 cut(s)	8, 45, 177, 278, 325, 401, 606, 701, 763
FatI	CATG	5 cut(s)	323, 399, 604, 699, 761
FauI	CCCGC	1 cut(s)	632
FbaI	TGATCA	1 cut(s)	102
FriOI	GRGCYC	1 cut(s)	781
FspBI	CTAG	2 cut(s)	186, 296
GlaI	GCGC	1 cut(s)	22
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	87, 633, 643
HapII	CCGG	2 cut(s)	91, 230
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	327, 403, 608, 703, 765
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	163, 527
HpaII	CCGG	2 cut(s)	91, 230
HphI	GGTGA	1 cut(s)	727
Hpy166II	GTNNAC	2 cut(s)	205, 313
Hpy188I	TCNGA	2 cut(s)	74, 526
Hpy188III	TCNNGA	3 cut(s)	152, 230, 357
Hpy8I	GTNNAC	2 cut(s)	205, 313
HpyAV	CCTTC	5 cut(s)	151, 352, 445, 706, 768
HpyCH4III	ACNGT	3 cut(s)	58, 317, 485
HpyCH4IV	ACGT	1 cut(s)	689
HpyCH4V	TGCA	6 cut(s)	248, 266, 323, 446, 725, 765
HpyF3I	CTNAG	1 cut(s)	153
HpySE526I	ACGT	1 cut(s)	689
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	327, 403, 608, 703, 765
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	229
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	102, 148, 353, 521
LmnI	GCTCC	3 cut(s)	14, 232, 623
Lsp1109I	GCAGC	8 cut(s)	38, 41, 44, 47, 50, 222, 540, 777
LweI	GCATC	2 cut(s)	112, 310
MaeI	CTAG	2 cut(s)	186, 296
MaeII	ACGT	1 cut(s)	689
MaeIII	GTNAC	2 cut(s)	433, 715
MalI	GATC	4 cut(s)	104, 150, 355, 523
MboI	GATC	4 cut(s)	102, 148, 353, 521
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	781
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	440
MnlI	CCTC	8 cut(s)	58, 60, 237, 512, 568, 586, 629, 768
Mph1103I	ATGCAT	1 cut(s)	325
MroI	TCCGGA	1 cut(s)	229
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	318
MspI	CCGG	2 cut(s)	91, 230
MspR9I	CCNGG	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	664
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	4 cut(s)	102, 148, 353, 521
NheI	GCTAGC	1 cut(s)	295
NlaIII	CATG	5 cut(s)	327, 403, 608, 703, 765
NlaIV	GGNNCC	3 cut(s)	22, 355, 695
NmeAIII	GCCGAG	1 cut(s)	659
NmuCI	GTSAC	2 cut(s)	433, 715
NsiI	ATGCAT	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	163, 527
PluTI	GGCGCC	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	662
PspEI	GGTNACC	1 cut(s)	715
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	22, 355, 695
PspPI	GGNCC	2 cut(s)	85, 641
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	353
RsaI	GTAC	2 cut(s)	442, 749
RsaNI	GTAC	2 cut(s)	441, 748
RseI	CAYNNNNRTG	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	741
Sau3AI	GATC	4 cut(s)	102, 148, 353, 521
Sau96I	GGNCC	2 cut(s)	85, 641
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	781
SetI	ASST	9 cut(s)	19, 69, 214, 237, 301, 378, 628, 692, 717
SfaNI	GCATC	2 cut(s)	112, 310
SfoI	GGCGCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	318
SsiI	CCGC	3 cut(s)	24, 88, 639
SspDI	GGCGCC	1 cut(s)	20
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	2 cut(s)	186, 296
StyD4I	CCNGG	1 cut(s)	662
TaaI	ACNGT	3 cut(s)	58, 317, 485
TaiI	ACGT	1 cut(s)	692
TaqI	TCGA	1 cut(s)	369
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	2 cut(s)	26, 90
TfiI	GAWTC	2 cut(s)	163, 527
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TscAI	CASTG	4 cut(s)	124, 149, 255, 322
TseFI	GTSAC	2 cut(s)	433, 715
TseI	GCWGC	8 cut(s)	26, 29, 32, 35, 38, 235, 553, 765
Tsp45I	GTSAC	2 cut(s)	433, 715
TspDTI	ATGAA	8 cut(s)	23, 423, 582, 621, 639, 672, 716, 750
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	4 cut(s)	124, 149, 255, 322
XspI	CTAG	2 cut(s)	186, 296
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.