Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003091

Physical Location & Seq

Genomic Coordinates Reverse (-)

11515463 .. 11519020

Gene Structure 3558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006884

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAATCCCAATTTTGGTCGAGCTCGAGCGCCAAATCTCGCCGGAGATGAGCCAAACTTGCTGCTAAGCAAGCTAGTTGGACTATCAGAAATAGCAAACGATATCCATGACGAAATTGACCTGGTTCTCGTGGTCCTACGACAAGTCGTCGGTGTTGGAAATGGAATTGGGCTCCAAAACGACGTCGTCGCGGTTCTGCTCGGCGTGGATTGTGGAATGGTACTGGGAAAAGATGTTGTCTTCGCTGTCAAAGTCTTCGTCGTCTTCTTCGTGGAAAGTGACGAACTGGGCCAGCGGGAAATCAGGATCGGAGGAAATGTAGAGGTCGAAGTCGTTGGAGGACCAGTAGGGGAGGGATTCGAAGGCTTGTTTATATGGTTGTCCTCGTCGGCGAGGAGAGGTTCTGAGTCTCAGGGAAAGTATGCAAAGGTAATGCAAGCAAGGGAAGACTATGAGGATGGCACAGAAGATGAAGATGAGGATGAGCATGGAGAGACACTATGTGGGTCTTGTGGAGAGAACTATGCATCTGATGAATTTTGGATTTGCTGCGATGTCTGTGAGAAGTGGTTCCATGGCAAGTGTGTGAAGATCACCCCAGCAAGGGCCGAGCATATTAAGCAGTACAAATGTCCATCTTGCAGCAACAAGAAATCCCGACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009889 GO:0009890 GO:0009892 GO:0010035 GO:0010556 GO:0010558 GO:0010605 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0035064 GO:0042221 GO:0042393 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140030 GO:0140034 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Alfin PHD

Protein Analysis

222

Amino Acids

24.13

Weight (kDa)

4.67

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	168 - 214	8e-09	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G42790 AT5G20510 AT5G20510
fragaria_vesca	FvH4_2g31281 FvH4_2g31281 FvH4_6g34320
malus_domestica	MD08G1069100.v1.1 MD09G1186300.v1.1 MD15G1052900.v1.1 MD17G1171200.v1.1
prunus_persica	Prupe.1G406800_v2.0.a1 Prupe.1G406800_v2.0.a1 Prupe.3G044000_v2.0.a1 Prupe.3G044000_v2.0.a1
pyrus_communis	pycom08g05690 pycom09g10350 pycom15g05060 pycom17g16870
rosa_chinensis	RchiOBHm_Chr2g0144691 RchiOBHm_Chr6g0311511 RchiOBHm_Chr7g0239581
rosa_laevigata	RLG00000006884 RLG00000010399 RLG00000020101
rosa_multiflora	Rmu_sc0000227.1_g000006 Rmu_sc0015790.1_g000007 Rmu_sc0039327.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101070 Rroxscaffold_7G00157550
rosa_rugosa	Rorug02G0388800 Rorug06G0389300
rosa_samantha	Rh2BG451100 Rh6AG504100 Rh6DG506600
rosa_wichuraiana	Rw2G036050 Rw4G005730 Rw6G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	191
AciI	CCGC	2 cut(s)	191, 295
AclWI	GGATC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	2 cut(s)	222, 626
AfiI	CCNNNNNNNGG	3 cut(s)	14, 603, 604
AhdI	GACNNNNNGTC	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	2 cut(s)	23, 73
AluI	AGCT	2 cut(s)	23, 73
Alw21I	GWGCWC	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	414, 488
AlwI	GGATC	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	2 cut(s)	289, 606
ApeKI	GCWGC	3 cut(s)	61, 549, 642
ApoI	RAATTY	1 cut(s)	536
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
Asp700I	GAANNNNTTC	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	4 cut(s)	133, 289, 341, 606
AsuHPI	GGTGA	1 cut(s)	586
AsuII	TTCGAA	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	2 cut(s)	133, 341
BanII	GRGCYC	2 cut(s)	25, 174
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	4 cut(s)	232, 247, 256, 453
Bbv12I	GWGCWC	1 cut(s)	25
BbvI	GCAGC	3 cut(s)	48, 536, 654
BccI	CCATC	2 cut(s)	452, 643
BciT130I	CCWGG	1 cut(s)	122
BcoDI	GTCTC	2 cut(s)	414, 488
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	3 cut(s)	62, 550, 643
BlpI	GCTNAGC	1 cut(s)	65
BlsI	GCNGC	3 cut(s)	63, 551, 644
Bme1390I	CCNGG	1 cut(s)	122
Bme18I	GGWCC	2 cut(s)	133, 341
BmeRI	GACNNNNNGTC	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	4 cut(s)	133, 289, 341, 606
BmiI	GGNNCC	2 cut(s)	173, 572
BmrFI	CCNGG	1 cut(s)	122
BmrI	ACTGGG	2 cut(s)	233, 296
BmsI	GCATC	1 cut(s)	536
BmuI	ACTGGG	2 cut(s)	233, 296
BpiI	GAAGAC	4 cut(s)	232, 247, 256, 453
Bpu1102I	GCTNAGC	1 cut(s)	65
Bpu14I	TTCGAA	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	574
BsaXI	ACNNNNNCTCC	4 cut(s)	303, 330, 333, 360
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 603, 604
Bse1I	ACTGG	3 cut(s)	228, 291, 344
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	463, 487
BseLI	CCNNNNNNNGG	3 cut(s)	14, 603, 604
BseMII	CTCAG	2 cut(s)	396, 425
BseNI	ACTGG	3 cut(s)	228, 291, 344
BseRI	GAGGAG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	48, 536, 654
BseYI	CCCAGC	1 cut(s)	598
Bsh1236I	CGCG	1 cut(s)	191
BshFI	GGCC	2 cut(s)	291, 608
BsiHKAI	GWGCWC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	42
BslI	CCNNNNNNNGG	3 cut(s)	14, 603, 604
BsmAI	GTCTC	2 cut(s)	414, 488
BsnI	GGCC	2 cut(s)	291, 608
BsoBI	CYCGRG	1 cut(s)	24
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	25, 174
Bsp143I	GATC	2 cut(s)	306, 591
Bsp1720I	GCTNAGC	1 cut(s)	65
Bsp19I	CCATGG	1 cut(s)	574
BspACI	CCGC	2 cut(s)	191, 295
BspANI	GGCC	2 cut(s)	291, 608
BspCNI	CTCAG	2 cut(s)	397, 424
BspFNI	CGCG	1 cut(s)	191
BspLI	GGNNCC	2 cut(s)	173, 572
BspPI	GGATC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	360
BsrI	ACTGG	3 cut(s)	228, 291, 344
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	2 cut(s)	306, 591
BssNI	GRCGYC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	574
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	183
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	71, 293, 438
BstDEI	CTNAG	3 cut(s)	65, 405, 411
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	2 cut(s)	463, 487
BstFNI	CGCG	1 cut(s)	191
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	309, 594
BstMAI	GTCTC	2 cut(s)	414, 488
BstMBI	GATC	2 cut(s)	306, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	58, 70, 619
BstNI	CCWGG	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	120
BstUI	CGCG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	48, 536, 654
BstV2I	GAAGAC	4 cut(s)	232, 247, 256, 453
BsuRI	GGCC	2 cut(s)	291, 608
BtgI	CCRYGG	1 cut(s)	574
BtgZI	GCGATG	1 cut(s)	567
BtsCI	GGATG	2 cut(s)	463, 487
Cac8I	GCNNGC	3 cut(s)	71, 293, 438
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	4 cut(s)	133, 289, 341, 606
CsiI	ACCWGGT	1 cut(s)	120
Csp6I	GTAC	2 cut(s)	221, 625
CviAII	CATG	3 cut(s)	107, 488, 575
CviJI	RGCY	7 cut(s)	23, 52, 73, 172, 291, 366, 608
CviKI_1	RGCY	7 cut(s)	23, 52, 73, 172, 291, 366, 608
CviQI	GTAC	2 cut(s)	221, 625
DdeI	CTNAG	3 cut(s)	65, 405, 411
DpnI	GATC	2 cut(s)	308, 593
DpnII	GATC	2 cut(s)	306, 591
DraIII	CACNNNGTG	1 cut(s)	503
DriI	GACNNNNNGTC	1 cut(s)	146
Eam1105I	GACNNNNNGTC	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	2 cut(s)	25, 174
Eco32I	GATATC	1 cut(s)	103
Eco47I	GGWCC	2 cut(s)	133, 341
Eco53kI	GAGCTC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	120
EcoRV	GATATC	1 cut(s)	103
EcoT14I	CCWWGG	1 cut(s)	574
EcoT22I	ATGCAT	1 cut(s)	529
EcoT38I	GRGCYC	2 cut(s)	25, 174
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	110, 491, 578
FatI	CATG	3 cut(s)	106, 487, 574
FauI	CCCGC	1 cut(s)	288
Fnu4HI	GCNGC	3 cut(s)	62, 550, 643
FokI	GGATG	2 cut(s)	470, 494
FriOI	GRGCYC	2 cut(s)	25, 174
Fsp4HI	GCNGC	3 cut(s)	62, 550, 643
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	3 cut(s)	62, 550, 643
GsaI	CCCAGC	1 cut(s)	602
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	291, 608
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	110, 491, 578
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	3 cut(s)	4, 357, 407
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	1 cut(s)	586
Hpy188I	TCNGA	4 cut(s)	88, 311, 406, 532
Hpy188III	TCNNGA	2 cut(s)	304, 657
Hpy99I	CGWCG	6 cut(s)	152, 185, 188, 191, 263, 391
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	4 cut(s)	425, 436, 527, 642
HpyF10VI	GCNNNNNNNGC	3 cut(s)	58, 70, 619
HpyF3I	CTNAG	3 cut(s)	65, 405, 411
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	110, 491, 578
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	306, 591
LmnI	GCTCC	1 cut(s)	177
Lsp1109I	GCAGC	3 cut(s)	48, 536, 654
LweI	GCATC	1 cut(s)	536
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	1 cut(s)	74
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	308, 593
MboI	GATC	2 cut(s)	306, 591
MboII	GAAGA	8 cut(s)	232, 247, 256, 259, 458, 479, 485, 601
MhlI	GDGCHC	2 cut(s)	25, 174
MluCI	AATT	4 cut(s)	10, 114, 165, 536
MlyI	GAGTC	1 cut(s)	416
MmeI	TCCRAC	3 cut(s)	58, 136, 316
MnlI	CCTC	9 cut(s)	305, 316, 332, 346, 387, 392, 394, 448, 472
Mph1103I	ATGCAT	1 cut(s)	529
MroXI	GAANNNNTTC	1 cut(s)	569
MseI	TTAA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	122
MvnI	CGCG	1 cut(s)	191
MwoI	GCNNNNNNNGC	3 cut(s)	58, 70, 619
NcoI	CCATGG	1 cut(s)	574
NdeII	GATC	2 cut(s)	306, 591
NlaIII	CATG	3 cut(s)	110, 491, 578
NlaIV	GGNNCC	2 cut(s)	173, 572
NmeAIII	GCCGAG	2 cut(s)	180, 634
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	1 cut(s)	529
NspV	TTCGAA	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	569
PfeI	GAWTC	2 cut(s)	4, 357
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	63, 551, 644
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
Psp124BI	GAGCTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	120
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	2 cut(s)	173, 572
PspPI	GGNCC	4 cut(s)	133, 289, 341, 606
PspXI	VCTCGAGB	1 cut(s)	24
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	222, 626
RsaNI	GTAC	2 cut(s)	221, 625
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	618
SatI	GCNGC	3 cut(s)	62, 550, 643
Sau3AI	GATC	2 cut(s)	306, 591
Sau96I	GGNCC	4 cut(s)	133, 289, 341, 606
SchI	GAGTC	1 cut(s)	416
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	25, 174
SetI	ASST	8 cut(s)	25, 75, 123, 186, 327, 403, 432, 664
SexAI	ACCWGGT	1 cut(s)	120
SfaNI	GCATC	1 cut(s)	536
Sfr274I	CTCGAG	1 cut(s)	24
SfuI	TTCGAA	1 cut(s)	360
SinI	GGWCC	2 cut(s)	133, 341
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	4 cut(s)	10, 114, 165, 536
SsiI	CCGC	2 cut(s)	191, 295
SspMI	CTAG	1 cut(s)	74
SstI	GAGCTC	1 cut(s)	25
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	574
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	4 cut(s)	19, 25, 327, 360
TasI	AATT	4 cut(s)	10, 114, 165, 536
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	2 cut(s)	4, 357
Tru1I	TTAA	1 cut(s)	618
Tru9I	TTAA	1 cut(s)	618
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	3 cut(s)	61, 549, 642
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	17, 486, 549
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	133, 341
XapI	RAATTY	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	569
XspI	CTAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	184
Zsp2I	ATGCAT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.