AT3G50530

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
18753337 .. 18757145
3809 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G50530.1

Sequence Viewer

Length: 1806 bp
ATGGGTCTATGTACTTCGAAACCGAATTCATCTAATTCCGATCAAACTCCGGCGAGGAATAGTCCACTTCCGGCGTCTGAATCCGTCAAGCCTTCGAGCTCTTCCGTTAATGGTGAAGATCAGTGTGTAACAACAACGAACAATGAAGGCAAAAAGTCTCCGTTTTTCCCTTTTTATAGTCCAAGTCCAGCTCACTATTTCTTCTCCAAGAAGACTCCGGCGAGATCTCCGGCGACTAATTCGACTAATTCGACTCCGAAGCGATTCTTTAAACGGCCGTTTCCTCCTCCGTCTCCGGCTAAACATATCAGAGCTGTTTTAGCGAGAAGGCATGGTTCTGTGAAGCCTAATTCGTCGGCGATCCCTGAAGGTAGTGAAGCTGAAGGAGGTGGTGTTGGATTGGATAAAAGCTTTGGTTTTTCCAAGAGTTTTGCGAGTAAGTATGAGCTTGGTGATGAAGTTGGTCGTGGTCATTTTGGTTATACTTGTGCTGCTAAGTTTAAGAAGGGTGATAATAAAGGTCAACAAGTCGCGGTTAAAGTCATTCCCAAAGCAAAGATGACGACGGCTATTGCAATTGAAGATGTGAGAAGGGAAGTGAAGATATTGAGGGCTTTGTCTGGTCATAACAATCTTCCTCATTTCTATGATGCTTATGAGGATCATGATAATGTCTATATAGTGATGGAACTATGTGAAGGAGGAGAGCTTTTGGATAGAATACTTTCAAGAGGTGGGAAGTACACAGAGGAGGATGCAAAGACCGTTATGATACAAATATTGAATGTGGTTGCTTTTTGTCATCTGCAAGGCGTTGTACACAGAGATCTTAAACCAGAGAATTTTCTTTTTACCTCAAAAGAAGACACCTCTCAATTGAAGGCAATAGATTTCGGTTTGTCAGATTACGTGAGACCAGATGAGAGGCTCAATGACATTGTTGGTAGTGCATACTATGTAGCACCTGAAGTTCTGCATAGATCTTACAGTACAGAAGCTGATATTTGGAGTGTTGGTGTGATTGTATATATTCTATTGTGTGGAAGCCGACCGTTTTGGGCTAGGACAGAATCAGGAATCTTTCGTGCTGTTCTAAAAGCTGATCCAAGTTTTGATGACCCTCCTTGGCCTTTGTTATCTTCAGAGGCAAGAGATTTTGTAAAGCGGTTGCTAAACAAAGATCCGCGTAAAAGATTAACAGCTGCTCAAGCCTTAAGTCATCCATGGATAAAGGACTCAAACGACGCAAAGGTTCCAATGGATATTCTGGTTTTCAAACTTATGAGAGCTTATTTACGATCATCATCTCTCCGTAAAGCTGCATTAAGAGCTTTATCGAAAACACTTACGGTTGATGAACTGTTTTATCTGAGAGAGCAGTTTGCTTTGTTAGAACCTAGTAAGAACGGAACCATAAGTCTAGAAAACATCAAATCAGCTCTGATGAAAATGGCAACAGATGCGATGAAGGACTCACGTATTCCAGAGTTCTTAGGACAACTGAGTGCTCTTCAATATAGAAGAATGGACTTTGAGGAATTCTGTGCAGCGGCATTGAGTGTTCACCAGCTAGAAGCTCTTGATCGATGGGAACAACACGCTCGTTGTGCTTATGAGCTTTTCGAAAAGGAAGGGAACCGACCAATCATGATCGATGAACTCGCTTCGGAACTTGGTCTTGGCCCTTCTGTACCGGTTCACGCAGTGCTTCACGATTGGCTTAGACATACCGATGGGAAGCTTAGCTTTCTCGGATTTGTGAAATTGCTACATGGTGTGTCTAGCCGCACGATCAAAGCTCATTAG

Protein Analysis

601

Amino Acids

66.99

Weight (kDa)

8.9

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 148 - 410 1e-72 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 149 - 403 5.7e-34 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 533, 1186
AciI CCGC 5 cut(s) 533, 1165, 1184, 1550, 1786
AclWI GGATC 4 cut(s) 355, 669, 1097, 1175
AcoI YGGCCR 1 cut(s) 275
AcsI RAATTY 3 cut(s) 25, 841, 1538
AcuI CTGAAG 4 cut(s) 387, 402, 987, 1125
AcyI GRCGYC 1 cut(s) 74
AdeI CACNNNGTG 1 cut(s) 1705
AfaI GTAC 5 cut(s) 13, 743, 819, 991, 1692
AflII CTTAAG 1 cut(s) 1213
AgeI ACCGGT 1 cut(s) 1693
AgsI TTSAA 6 cut(s) 581, 729, 784, 880, 1276, 1514
AjuI GAANNNNNNNTTGG 2 cut(s) 1662, 1694
Alw21I GWGCWC 2 cut(s) 101, 1510
Alw26I GTCTC 3 cut(s) 162, 297, 907
AlwI GGATC 4 cut(s) 355, 669, 1097, 1175
AlwNI CAGNNNCTG 1 cut(s) 998
AoxI GGCC 3 cut(s) 275, 1127, 1681
ApeKI GCWGC 4 cut(s) 491, 1202, 1319, 1547
ApoI RAATTY 3 cut(s) 25, 841, 1538
AsiGI ACCGGT 1 cut(s) 1693
Asp700I GAANNNNTTC 2 cut(s) 263, 724
AspS9I GGNCC 1 cut(s) 1682
AsuHPI GGTGA 4 cut(s) 125, 464, 521, 1556
AsuII TTCGAA 2 cut(s) 17, 1623
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 218, 870
Bbv12I GWGCWC 2 cut(s) 101, 1510
BbvI GCAGC 4 cut(s) 478, 1189, 1306, 1559
BccI CCATC 3 cut(s) 679, 1581, 1727
BceAI ACGGC 3 cut(s) 262, 290, 582
BcoDI GTCTC 3 cut(s) 162, 297, 907
BfaI CTAG 5 cut(s) 1062, 1398, 1421, 1571, 1782
BfrI CTTAAG 1 cut(s) 1213
BglII AGATCT 3 cut(s) 224, 826, 980
BisI GCNGC 6 cut(s) 492, 1203, 1320, 1548, 1551, 1786
BlpI GCTNAGC 1 cut(s) 1742
BlsI GCNGC 6 cut(s) 493, 1204, 1321, 1549, 1552, 1787
BmgT120I GGNCC 1 cut(s) 1682
BmiI GGNNCC 3 cut(s) 1254, 1411, 1637
BmsI GCATC 3 cut(s) 640, 745, 1450
BpiI GAAGAC 2 cut(s) 218, 870
Bpu1102I GCTNAGC 1 cut(s) 1742
Bpu14I TTCGAA 2 cut(s) 17, 1623
BpuEI CTTGAG 1 cut(s) 1191
Bsa29I ATCGAT 2 cut(s) 1585, 1653
BsaAI YACGTR 2 cut(s) 910, 1478
BsaBI GATNNNNATC 1 cut(s) 1303
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 2 cut(s) 1124, 1223
BsaWI WCCGGW 1 cut(s) 1693
BsaXI ACNNNNNCTCC 4 cut(s) 378, 408, 1000, 1030
Bse118I RCCGGY 1 cut(s) 1693
Bse8I GATNNNNATC 1 cut(s) 1303
BseCI ATCGAT 2 cut(s) 1585, 1653
BseDI CCNNGG 2 cut(s) 1124, 1223
BseGI GGATG 2 cut(s) 760, 1219
BseJI GATNNNNATC 1 cut(s) 1303
BseMII CTCAG 2 cut(s) 1361, 1493
BseRI GAGGAG 3 cut(s) 276, 717, 764
BseX3I CGGCCG 1 cut(s) 275
BseXI GCAGC 4 cut(s) 478, 1189, 1306, 1559
BsgI GTGCAG 1 cut(s) 1566
Bsh1236I CGCG 2 cut(s) 533, 1186
Bsh1285I CGRYCG 2 cut(s) 278, 1052
BshFI GGCC 3 cut(s) 277, 1129, 1683
BshTI ACCGGT 1 cut(s) 1693
BshVI ATCGAT 2 cut(s) 1585, 1653
BsiEI CGRYCG 2 cut(s) 278, 1052
BsiHKAI GWGCWC 2 cut(s) 101, 1510
BsiSI CCGG 6 cut(s) 50, 71, 218, 230, 296, 1694
BsmAI GTCTC 3 cut(s) 162, 297, 907
BsmBI CGTCTC 1 cut(s) 297
BsnI GGCC 3 cut(s) 277, 1129, 1683
Bso31I GGTCTC 1 cut(s) 907
Bsp119I TTCGAA 2 cut(s) 17, 1623
Bsp1286I GDGCHC 2 cut(s) 101, 1510
Bsp1407I TGTACA 1 cut(s) 817
Bsp1720I GCTNAGC 1 cut(s) 1742
Bsp19I CCATGG 1 cut(s) 1223
BspACI CCGC 5 cut(s) 533, 1165, 1184, 1550, 1786
BspANI GGCC 3 cut(s) 277, 1129, 1683
BspCNI CTCAG 2 cut(s) 1362, 1494
BspDI ATCGAT 2 cut(s) 1585, 1653
BspFNI CGCG 2 cut(s) 533, 1186
BspHI TCATGA 2 cut(s) 664, 1647
BspLI GGNNCC 3 cut(s) 1254, 1411, 1637
BspPI GGATC 4 cut(s) 355, 669, 1097, 1175
BspQI GCTCTTC 2 cut(s) 106, 1515
BspT104I TTCGAA 2 cut(s) 17, 1623
BspTI CTTAAG 1 cut(s) 1213
BspTNI GGTCTC 1 cut(s) 907
BsrFI RCCGGY 1 cut(s) 1693
BsrGI TGTACA 1 cut(s) 817
BssAI RCCGGY 1 cut(s) 1693
BssECI CCNNGG 2 cut(s) 1124, 1223
BssNI GRCGYC 1 cut(s) 74
BssT1I CCWWGG 2 cut(s) 1124, 1223
Bst4CI ACNGT 5 cut(s) 766, 989, 1053, 1351, 1362
Bst6I CTCTTC 2 cut(s) 106, 1515
BstACI GRCGYC 1 cut(s) 74
BstAFI CTTAAG 1 cut(s) 1213
BstAPI GCANNNNNTGC 1 cut(s) 1460
BstAUI TGTACA 1 cut(s) 817
BstBAI YACGTR 2 cut(s) 910, 1478
BstBI TTCGAA 2 cut(s) 17, 1623
BstDEI CTNAG 6 cut(s) 495, 1370, 1492, 1502, 1721, 1742
BstDSI CCRYGG 1 cut(s) 1223
BstF5I GGATG 2 cut(s) 760, 1219
BstFNI CGCG 2 cut(s) 533, 1186
BstMAI GTCTC 3 cut(s) 162, 297, 907
BstMCI CGRYCG 2 cut(s) 278, 1052
BstMWI GCNNNNNNNGC 5 cut(s) 320, 1208, 1328, 1460, 1607
BstUI CGCG 2 cut(s) 533, 1186
BstV1I GCAGC 4 cut(s) 478, 1189, 1306, 1559
BstV2I GAAGAC 2 cut(s) 218, 870
BstX2I RGATCY 4 cut(s) 224, 826, 980, 1180
BstYI RGATCY 4 cut(s) 224, 826, 980, 1180
BstZI CGGCCG 1 cut(s) 275
Bsu15I ATCGAT 2 cut(s) 1585, 1653
BsuRI GGCC 3 cut(s) 277, 1129, 1683
BsuTUI ATCGAT 2 cut(s) 1585, 1653
BtgI CCRYGG 1 cut(s) 1223
BtgZI GCGATG 1 cut(s) 1478
BtsCI GGATG 2 cut(s) 760, 1219
BtsI GCAGTG 1 cut(s) 1710
BtsIMutI CAGTG 2 cut(s) 128, 1710
CaiI CAGNNNCTG 1 cut(s) 998
CciI TCATGA 2 cut(s) 664, 1647
Cfr10I RCCGGY 1 cut(s) 1693
Cfr13I GGNCC 1 cut(s) 1682
ClaI ATCGAT 2 cut(s) 1585, 1653
CseI GACGC 2 cut(s) 63, 1253
Csp6I GTAC 5 cut(s) 12, 742, 818, 990, 1691
CspAI ACCGGT 1 cut(s) 1693
CviAII CATG 5 cut(s) 332, 665, 1224, 1648, 1772
CviQI GTAC 5 cut(s) 12, 742, 818, 990, 1691
DdeI CTNAG 6 cut(s) 495, 1370, 1492, 1502, 1721, 1742
DraI TTTAAA 1 cut(s) 271
DraIII CACNNNGTG 1 cut(s) 1705
EaeI YGGCCR 1 cut(s) 275
EagI CGGCCG 1 cut(s) 275
Eam1104I CTCTTC 2 cut(s) 106, 1515
EarI CTCTTC 2 cut(s) 106, 1515
Ecl136II GAGCTC 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 1124, 1223
Eco24I GRGCYC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 907
Eco52I CGGCCG 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 4 cut(s) 387, 402, 987, 1125
EcoICRI GAGCTC 1 cut(s) 99
EcoRI GAATTC 2 cut(s) 25, 1538
EcoT14I CCWWGG 2 cut(s) 1124, 1223
EcoT38I GRGCYC 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 1124, 1223
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 5 cut(s) 335, 668, 1227, 1651, 1775
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 1730, 1762
FatI CATG 5 cut(s) 331, 664, 1223, 1647, 1771
Fnu4HI GCNGC 6 cut(s) 492, 1203, 1320, 1548, 1551, 1786
FokI GGATG 2 cut(s) 767, 1206
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 6 cut(s) 492, 1203, 1320, 1548, 1551, 1786
FspBI CTAG 5 cut(s) 1062, 1398, 1421, 1571, 1782
GluI GCNGC 6 cut(s) 492, 1203, 1320, 1548, 1551, 1786
HaeIII GGCC 3 cut(s) 277, 1129, 1683
HapII CCGG 6 cut(s) 50, 71, 218, 230, 296, 1694
HgaI GACGC 2 cut(s) 63, 1253
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 5 cut(s) 335, 668, 1227, 1651, 1775
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HindIII AAGCTT 2 cut(s) 409, 1739
HinfI GANTC 8 cut(s) 80, 214, 253, 264, 1070, 1077, 1235, 1472
HpaII CCGG 6 cut(s) 50, 71, 218, 230, 296, 1694
HphI GGTGA 4 cut(s) 125, 464, 521, 1556
Hpy166II GTNNAC 6 cut(s) 65, 524, 744, 820, 1564, 1699
Hpy188III TCNNGA 8 cut(s) 665, 729, 1074, 1421, 1484, 1580, 1648, 1712
Hpy8I GTNNAC 6 cut(s) 65, 524, 744, 820, 1564, 1699
Hpy99I CGWCG 3 cut(s) 358, 568, 1247
HpyCH4III ACNGT 5 cut(s) 766, 989, 1053, 1351, 1362
HpyCH4IV ACGT 2 cut(s) 909, 1477
HpyCH4V TGCA 7 cut(s) 575, 758, 808, 950, 976, 1322, 1547
HpyF10VI GCNNNNNNNGC 5 cut(s) 320, 1208, 1328, 1460, 1607
HpyF3I CTNAG 6 cut(s) 495, 1370, 1492, 1502, 1721, 1742
HpySE526I ACGT 2 cut(s) 909, 1477
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 5 cut(s) 335, 668, 1227, 1651, 1775
LguI GCTCTTC 2 cut(s) 106, 1515
Lsp1109I GCAGC 4 cut(s) 478, 1189, 1306, 1559
LweI GCATC 3 cut(s) 640, 745, 1450
MaeI CTAG 5 cut(s) 1062, 1398, 1421, 1571, 1782
MaeII ACGT 2 cut(s) 909, 1477
MaeIII GTNAC 1 cut(s) 127
MfeI CAATTG 2 cut(s) 576, 875
MflI RGATCY 4 cut(s) 224, 826, 980, 1180
MhlI GDGCHC 2 cut(s) 101, 1510
MlyI GAGTC 4 cut(s) 208, 247, 1229, 1466
MmeI TCCRAC 1 cut(s) 376
MroXI GAANNNNTTC 2 cut(s) 263, 724
MseI TTAA 8 cut(s) 108, 270, 501, 537, 831, 1196, 1214, 1325
MslI CAYNNNNRTG 3 cut(s) 645, 669, 1731
MspA1I CMGCKG 2 cut(s) 1202, 1550
MspCI CTTAAG 1 cut(s) 1213
MspI CCGG 6 cut(s) 50, 71, 218, 230, 296, 1694
MunI CAATTG 2 cut(s) 576, 875
MvnI CGCG 2 cut(s) 533, 1186
MwoI GCNNNNNNNGC 5 cut(s) 320, 1208, 1328, 1460, 1607
NcoI CCATGG 1 cut(s) 1223
NlaIII CATG 5 cut(s) 335, 668, 1227, 1651, 1775
NlaIV GGNNCC 3 cut(s) 1254, 1411, 1637
NspV TTCGAA 2 cut(s) 17, 1623
PagI TCATGA 2 cut(s) 664, 1647
PciSI GCTCTTC 2 cut(s) 106, 1515
PcsI WCGNNNNNNNCGW 1 cut(s) 248
PdmI GAANNNNTTC 2 cut(s) 263, 724
PfeI GAWTC 4 cut(s) 80, 264, 1070, 1077
PinAI ACCGGT 1 cut(s) 1693
PkrI GCNGC 6 cut(s) 493, 1204, 1321, 1549, 1552, 1787
PleI GAGTC 4 cut(s) 208, 247, 1229, 1466
PpsI GAGTC 4 cut(s) 208, 247, 1229, 1466
Ppu21I YACGTR 2 cut(s) 910, 1478
Psp124BI GAGCTC 1 cut(s) 101
PspN4I GGNNCC 3 cut(s) 1254, 1411, 1637
PspPI GGNCC 1 cut(s) 1682
PstNI CAGNNNCTG 1 cut(s) 998
PsuI RGATCY 4 cut(s) 224, 826, 980, 1180
PvuII CAGCTG 1 cut(s) 1202
RsaI GTAC 5 cut(s) 13, 743, 819, 991, 1692
RsaNI GTAC 5 cut(s) 12, 742, 818, 990, 1691
RseI CAYNNNNRTG 3 cut(s) 645, 669, 1731
SacI GAGCTC 1 cut(s) 101
SapI GCTCTTC 2 cut(s) 106, 1515
SaqAI TTAA 8 cut(s) 108, 270, 501, 537, 831, 1196, 1214, 1325
SatI GCNGC 6 cut(s) 492, 1203, 1320, 1548, 1551, 1786
Sau96I GGNCC 1 cut(s) 1682
SchI GAGTC 4 cut(s) 208, 247, 1229, 1466
SduI GDGCHC 2 cut(s) 101, 1510
SfaNI GCATC 3 cut(s) 640, 745, 1450
SfuI TTCGAA 2 cut(s) 17, 1623
SmiMI CAYNNNNRTG 3 cut(s) 645, 669, 1731
SmlI CTYRAG 2 cut(s) 1206, 1213
SmoI CTYRAG 2 cut(s) 1206, 1213
SsiI CCGC 5 cut(s) 533, 1165, 1184, 1550, 1786
SspI AATATT 1 cut(s) 780
SspMI CTAG 5 cut(s) 1062, 1398, 1421, 1571, 1782
SstI GAGCTC 1 cut(s) 101
StyI CCWWGG 2 cut(s) 1124, 1223
TaaI ACNGT 5 cut(s) 766, 989, 1053, 1351, 1362
TaiI ACGT 2 cut(s) 912, 1480
TaqI TCGA 8 cut(s) 17, 95, 242, 251, 1337, 1585, 1623, 1653
TatI WGTACW 4 cut(s) 11, 741, 817, 989
TauI GCSGC 2 cut(s) 1553, 1788
TfiI GAWTC 4 cut(s) 80, 264, 1070, 1077
Tru1I TTAA 8 cut(s) 108, 270, 501, 537, 831, 1196, 1214, 1325
Tru9I TTAA 8 cut(s) 108, 270, 501, 537, 831, 1196, 1214, 1325
TscAI CASTG 2 cut(s) 128, 1710
TseI GCWGC 4 cut(s) 491, 1202, 1319, 1547
TspDTI ATGAA 7 cut(s) 18, 159, 471, 1371, 1460, 1481, 1671
TspGWI ACGGA 6 cut(s) 73, 94, 150, 279, 1301, 1422
TspRI CASTG 2 cut(s) 128, 1710
Vha464I CTTAAG 1 cut(s) 1213
XapI RAATTY 3 cut(s) 25, 841, 1538
XbaI TCTAGA 1 cut(s) 1420
XmnI GAANNNNTTC 2 cut(s) 263, 724
XspI CTAG 5 cut(s) 1062, 1398, 1421, 1571, 1782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.