RchiOBHm_Chr2g0104821

CDPK-related kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
16112619 .. 16117141
4523 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47906

Sequence Viewer

Length: 1773 bp
ATGGGCTCAAATGTGACATGGTTTTTCAGTTTCTGTGGAACAAGGAATAAGATGAAGGACACATTGGTTTCAACAATAGACATAGAGCAGGAGGTCGAGGGAATTGAAGAAAATCAACCTGACATTAAAGGTAAATGCGAAGTACATGAACCTCCATCCCGATTCTTCAAGAGGCCGTTCTCAGTTCCTTCACCAGCAAAGCATATGAGGGCGCTTCTAGCAAGGGTGCTGGGGTTTTTTAAGTGGAAGGAGCAGGGTAGCATGACAAGGCTTCAGAAGAGTTTCGGGTATGTGACTGGAGAACAGGTTAAGGAGCTTGGAGAACAGGTTGAGGGCGGAACGGGGCTAGATAAGAGCTTTGGGTTCTCAAAGAATTTGATTAAAATGTATGAGCTTGGAAGTATGGTTGGGTTCGGGCATTTTTCCTACACTTGCATAGCTACTTTTAAGAAGGGAAAGCTTGAGGGCCACCATGCTGCTGTCAAGGTCATCTCCAAAGCCAAGATGGCTACTGCTATTGCCATTGATGATGTGAGAAGGGAAGTAAAGATATTGAGGGCTTTGAAAGGACATAACAATATAGTAAAATTTTATGATGCATATGAAGACCATGACAATGTCTACATAGTGATGGAATATTGTGCAGGAGGGGAGCTCCTAGATAGTATACTTGCAAGGGGTGGGAAATACCCCGAGGATGATGCAAGGACCAATTTTATGTTTATATCGAGTGATGAAGATTCACAGATGAAGGCTATAGACTTTGGCTTGTCAGATTATGTCAAACCTGATCAAAGGCTTAACGACATTGTTGGTACTAAGTACCATGTAGCCCCAGAAGTTCTACATAGGTCTTACAGTACAGAGGCTGATATGTGGAATGTAGGGGTGATTGCTTATGTTTTATTGACTGGCACCCGTCCATTTTGGGCTCAAACTGCATCTGGCATTTTTCGTGCTGTTCTGAGAAGTGATCCAAGTTTCGATGAATCACCTTGGCCATCTCTGTCTACTGAAGCAAAAGATTTTGTTAAGCGCCTATTGAATAAAGACCATCGAAAAAGAATGACTGCTGCTCAAGCTCTACGTGAGTCCCTCATACACTCCAAACAAATGTTTCATCATGTTTATAGTTCAATGTGTCACCCACTGCTTTCTATTGCAGATCATCTCTGGCTTAGAAACTATAATGATCTTAGAGTTCCTCTGGATATTCTAACATTCAAACTCATGAAGGCTTATATGCATTCATCAACTCTCCGGAAATCTGCTTTAGGGGCTCTTTCCAAGACATTGACTCCGGAAGACCTTTCTTATATGGAGGAGCAGTTTGAACAACTGGAACCAGACGGCAGTGGCACAATAGGCTTAGAAAATATTAAAACGGCCTTGATGAAAAATGCAACTGATGCAATGAAAGAGGGACGATATGAGGATCTTCTAGCATCACTTAATGCATTGCAATACAGAAGAATGGCGTTTAAGGAATTTTGTGCAGCCACATTGTGTGTCCACCAACTTGAGGCTCTTGATCAATGGGAGCAACAATCTCGTTATGCCTATGAACTTTTTGATAAGGATGGCAACAAGGTTGTTATCACGGAGGAGCTGGCTTCGGAGCTTGACCTCGGCCCTTCTGTCCTTGTTCATGCTTTTCTTCGTGATTGGATTAGGCAAACTGATGGGAAACTTAGTTTCGTTGGGTTTGTCAAGTTGTTGCATGGGGTTTCTGGCCGCACCTTGCGAAAGGTGAATGATAGTACGTTGCAATGA

Protein Analysis

590

Amino Acids

66.91

Weight (kDa)

6.84

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 130 - 238 6.9e-17 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 132 - 227 2.6e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 245 - 365 7.7e-28 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 246 - 360 7.1e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 914
AccI GTMKAC 3 cut(s) 621, 667, 1010
AccIII TCCGGA 2 cut(s) 1260, 1300
AciI CCGC 2 cut(s) 336, 1735
AclWI GGATC 2 cut(s) 968, 1443
AcoI YGGCCR 2 cut(s) 998, 1732
AcsI RAATTY 3 cut(s) 373, 587, 1487
AcuI CTGAAG 2 cut(s) 257, 1035
AdeI CACNNNGTG 1 cut(s) 1506
AfaI GTAC 5 cut(s) 144, 817, 824, 862, 1762
AfiI CCNNNNNNNGG 1 cut(s) 1522
AgsI TTSAA 8 cut(s) 72, 107, 169, 565, 1045, 1137, 1225, 1334
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 9 cut(s) 316, 357, 394, 440, 460, 655, 1082, 1609, 1621
AluI AGCT 9 cut(s) 316, 357, 394, 440, 460, 655, 1082, 1609, 1621
Alw21I GWGCWC 1 cut(s) 657
AlwI GGATC 2 cut(s) 968, 1443
AlwNI CAGNNNCTG 2 cut(s) 33, 869
Ama87I CYCGRG 1 cut(s) 692
Aor13HI TCCGGA 2 cut(s) 1260, 1300
AoxI GGCC 6 cut(s) 173, 466, 998, 1386, 1630, 1732
ApeKI GCWGC 3 cut(s) 476, 1073, 1496
ApoI RAATTY 3 cut(s) 373, 587, 1487
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 2 cut(s) 214, 1038
AspS9I GGNCC 3 cut(s) 466, 708, 1631
AsuHPI GGTGA 5 cut(s) 183, 901, 984, 1136, 1762
AvaI CYCGRG 1 cut(s) 692
AvaII GGWCC 1 cut(s) 708
BalI TGGCCA 1 cut(s) 1000
BanI GGYRCC 1 cut(s) 914
BanII GRGCYC 4 cut(s) 8, 657, 934, 1282
BbsI GAAGAC 2 cut(s) 612, 1311
Bbv12I GWGCWC 1 cut(s) 657
BbvI GCAGC 3 cut(s) 463, 1060, 1508
BccI CCATC 7 cut(s) 163, 499, 625, 1009, 1062, 1574, 1676
BceAI ACGGC 3 cut(s) 160, 1366, 1401
BcgI CGANNNNNNTGC 4 cut(s) 683, 717, 1532, 1566
BclI TGATCA 2 cut(s) 790, 1531
BfaI CTAG 4 cut(s) 218, 347, 659, 1442
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 2 cut(s) 215, 1039
BglI GCCNNNNNGGC 1 cut(s) 506
BisI GCNGC 4 cut(s) 477, 1074, 1497, 1735
BlsI GCNGC 4 cut(s) 478, 1075, 1498, 1736
Bme18I GGWCC 1 cut(s) 708
BmeT110I CYCGRG 1 cut(s) 692
BmgT120I GGNCC 3 cut(s) 466, 708, 1631
BmiI GGNNCC 2 cut(s) 916, 1344
BmsI GCATC 5 cut(s) 586, 691, 950, 1399, 1454
BpiI GAAGAC 2 cut(s) 612, 1311
BplI GAGNNNNNCTC 2 cut(s) 639, 671
BpmI CTGGAG 1 cut(s) 318
BpuEI CTTGAG 3 cut(s) 482, 1062, 1541
BsaAI YACGTR 1 cut(s) 1088
BsaJI CCNNGG 3 cut(s) 693, 995, 1627
BsaWI WCCGGW 2 cut(s) 1260, 1300
BsaXI ACNNNNNCTCC 8 cut(s) 291, 312, 321, 342, 1282, 1312, 1313, 1343
Bsc4I CCNNNNNNNGG 1 cut(s) 1522
Bse1I ACTGG 3 cut(s) 301, 916, 1344
Bse3DI GCAATG 2 cut(s) 1419, 1457
BseAI TCCGGA 2 cut(s) 1260, 1300
BseDI CCNNGG 3 cut(s) 693, 995, 1627
BseGI GGATG 3 cut(s) 155, 703, 1585
BseLI CCNNNNNNNGG 1 cut(s) 1522
BseMI GCAATG 2 cut(s) 1419, 1457
BseMII CTCAG 2 cut(s) 195, 956
BseNI ACTGG 3 cut(s) 301, 916, 1344
BseRI GAGGAG 2 cut(s) 1337, 1619
BseXI GCAGC 3 cut(s) 463, 1060, 1508
BseYI CCCAGC 1 cut(s) 229
BsgI GTGCAG 2 cut(s) 663, 1515
BshFI GGCC 6 cut(s) 175, 468, 1000, 1388, 1632, 1734
BshNI GGYRCC 1 cut(s) 914
BsiHKAI GWGCWC 1 cut(s) 657
BsiHKCI CYCGRG 1 cut(s) 692
BsiSI CCGG 2 cut(s) 1261, 1301
BslFI GGGAC 2 cut(s) 1078, 1437
BslI CCNNNNNNNGG 1 cut(s) 1522
BsmFI GGGAC 2 cut(s) 1078, 1437
BsmI GAATGC 1 cut(s) 1246
BsnI GGCC 6 cut(s) 175, 468, 1000, 1388, 1632, 1734
BsoBI CYCGRG 1 cut(s) 692
Bsp1286I GDGCHC 4 cut(s) 8, 657, 934, 1282
Bsp13I TCCGGA 2 cut(s) 1260, 1300
Bsp143I GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
BspACI CCGC 2 cut(s) 336, 1735
BspANI GGCC 6 cut(s) 175, 468, 1000, 1388, 1632, 1734
BspCNI CTCAG 2 cut(s) 194, 957
BspEI TCCGGA 2 cut(s) 1260, 1300
BspHI TCATGA 1 cut(s) 1230
BspLI GGNNCC 2 cut(s) 916, 1344
BspPI GGATC 2 cut(s) 968, 1443
BspT107I GGYRCC 1 cut(s) 914
BsrDI GCAATG 2 cut(s) 1419, 1457
BsrI ACTGG 3 cut(s) 301, 916, 1344
BssECI CCNNGG 3 cut(s) 693, 995, 1627
BssMI GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
BssNAI GTATAC 1 cut(s) 668
BssT1I CCWWGG 1 cut(s) 995
Bst1107I GTATAC 1 cut(s) 668
Bst4CI ACNGT 1 cut(s) 860
Bst6I CTCTTC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 1409
BstBAI YACGTR 1 cut(s) 1088
BstC8I GCNNGC 1 cut(s) 1611
BstDEI CTNAG 7 cut(s) 181, 819, 965, 1178, 1196, 1369, 1691
BstF5I GGATG 3 cut(s) 155, 703, 1585
BstH2I RGCGCY 2 cut(s) 215, 1039
BstHHI GCGC 2 cut(s) 214, 1038
BstKTI GATC 6 cut(s) 793, 976, 1168, 1195, 1438, 1534
BstMBI GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
BstMWI GCNNNNNNNGC 7 cut(s) 218, 506, 938, 1079, 1277, 1365, 1409
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 3 cut(s) 463, 1060, 1508
BstV2I GAAGAC 2 cut(s) 612, 1311
BstX2I RGATCY 1 cut(s) 1435
BstYI RGATCY 1 cut(s) 1435
BstZ17I GTATAC 1 cut(s) 668
BsuRI GGCC 6 cut(s) 175, 468, 1000, 1388, 1632, 1734
BtsCI GGATG 3 cut(s) 155, 703, 1585
BtsI GCAGTG 2 cut(s) 1148, 1360
BtsIMutI CAGTG 2 cut(s) 1148, 1360
Cac8I GCNNGC 1 cut(s) 1611
CaiI CAGNNNCTG 2 cut(s) 33, 869
CciI TCATGA 1 cut(s) 1230
CfoI GCGC 2 cut(s) 214, 1038
Cfr13I GGNCC 3 cut(s) 466, 708, 1631
Csp6I GTAC 5 cut(s) 143, 816, 823, 861, 1761
CviQI GTAC 5 cut(s) 143, 816, 823, 861, 1761
DdeI CTNAG 7 cut(s) 181, 819, 965, 1178, 1196, 1369, 1691
DpnI GATC 6 cut(s) 792, 975, 1167, 1194, 1437, 1533
DpnII GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
DraIII CACNNNGTG 1 cut(s) 1506
EaeI YGGCCR 2 cut(s) 998, 1732
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
EciI GGCGGA 1 cut(s) 351
Ecl136II GAGCTC 1 cut(s) 655
Eco130I CCWWGG 1 cut(s) 995
Eco24I GRGCYC 4 cut(s) 8, 657, 934, 1282
Eco47I GGWCC 1 cut(s) 708
Eco53kI GAGCTC 1 cut(s) 655
Eco57I CTGAAG 2 cut(s) 257, 1035
Eco88I CYCGRG 1 cut(s) 692
EcoICRI GAGCTC 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 995
EcoT22I ATGCAT 3 cut(s) 601, 1248, 1459
EcoT38I GRGCYC 4 cut(s) 8, 657, 934, 1282
ErhI CCWWGG 1 cut(s) 995
FaqI GGGAC 2 cut(s) 1078, 1437
FauNDI CATATG 2 cut(s) 204, 601
FbaI TGATCA 2 cut(s) 790, 1531
FblI GTMKAC 3 cut(s) 621, 667, 1010
Fnu4HI GCNGC 4 cut(s) 477, 1074, 1497, 1735
FokI GGATG 3 cut(s) 142, 710, 1592
FriOI GRGCYC 4 cut(s) 8, 657, 934, 1282
Fsp4HI GCNGC 4 cut(s) 477, 1074, 1497, 1735
FspBI CTAG 4 cut(s) 218, 347, 659, 1442
GlaI GCGC 2 cut(s) 213, 1037
GluI GCNGC 4 cut(s) 477, 1074, 1497, 1735
GsaI CCCAGC 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 318
HaeII RGCGCY 2 cut(s) 215, 1039
HaeIII GGCC 6 cut(s) 175, 468, 1000, 1388, 1632, 1734
HapII CCGG 2 cut(s) 1261, 1301
HhaI GCGC 2 cut(s) 214, 1038
Hin6I GCGC 2 cut(s) 212, 1036
HinP1I GCGC 2 cut(s) 212, 1036
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 5 cut(s) 162, 740, 989, 1091, 1297
HpaII CCGG 2 cut(s) 1261, 1301
HphI GGTGA 5 cut(s) 183, 901, 984, 1136, 1762
Hpy166II GTNNAC 4 cut(s) 622, 668, 1011, 1513
Hpy188I TCNGA 4 cut(s) 276, 775, 966, 1618
Hpy188III TCNNGA 8 cut(s) 159, 169, 1208, 1231, 1261, 1301, 1529, 1661
Hpy8I GTNNAC 4 cut(s) 622, 668, 1011, 1513
HpyAV CCTTC 8 cut(s) 49, 198, 241, 445, 531, 745, 1228, 1644
HpyCH4III ACNGT 1 cut(s) 860
HpyCH4IV ACGT 2 cut(s) 1087, 1763
HpyF10VI GCNNNNNNNGC 7 cut(s) 218, 506, 938, 1079, 1277, 1365, 1409
HpyF3I CTNAG 7 cut(s) 181, 819, 965, 1178, 1196, 1369, 1691
HpySE526I ACGT 2 cut(s) 1087, 1763
HspAI GCGC 2 cut(s) 212, 1036
Kpn2I TCCGGA 2 cut(s) 1260, 1300
Ksp22I TGATCA 2 cut(s) 790, 1531
Kzo9I GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
LmnI GCTCC 8 cut(s) 250, 313, 652, 660, 1324, 1540, 1606, 1618
Lsp1109I GCAGC 3 cut(s) 463, 1060, 1508
LweI GCATC 5 cut(s) 586, 691, 950, 1399, 1454
MaeI CTAG 4 cut(s) 218, 347, 659, 1442
MaeII ACGT 2 cut(s) 1087, 1763
MaeIII GTNAC 3 cut(s) 13, 292, 1142
MalI GATC 6 cut(s) 792, 975, 1167, 1194, 1437, 1533
MboI GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
MboII GAAGA 9 cut(s) 119, 157, 289, 617, 749, 1316, 1430, 1482, 1649
MflI RGATCY 1 cut(s) 1435
MhlI GDGCHC 4 cut(s) 8, 657, 934, 1282
MlsI TGGCCA 1 cut(s) 1000
MluCI AATT 5 cut(s) 102, 373, 587, 712, 1487
MluNI TGGCCA 1 cut(s) 1000
MlyI GAGTC 2 cut(s) 1100, 1291
Mox20I TGGCCA 1 cut(s) 1000
Mph1103I ATGCAT 3 cut(s) 601, 1248, 1459
MroI TCCGGA 2 cut(s) 1260, 1300
MroXI GAANNNNTTC 1 cut(s) 281
MscI TGGCCA 1 cut(s) 1000
MslI CAYNNNNRTG 2 cut(s) 615, 629
Msp20I TGGCCA 1 cut(s) 1000
MspI CCGG 2 cut(s) 1261, 1301
Mva1269I GAATGC 1 cut(s) 1246
MwoI GCNNNNNNNGC 7 cut(s) 218, 506, 938, 1079, 1277, 1365, 1409
NdeI CATATG 2 cut(s) 204, 601
NdeII GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
NlaIV GGNNCC 2 cut(s) 916, 1344
NmeAIII GCCGAG 1 cut(s) 1608
NmuCI GTSAC 3 cut(s) 13, 292, 1142
NsiI ATGCAT 3 cut(s) 601, 1248, 1459
PagI TCATGA 1 cut(s) 1230
PctI GAATGC 1 cut(s) 1246
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 3 cut(s) 162, 740, 989
PflFI GACNNNGTC 1 cut(s) 617
PkrI GCNGC 4 cut(s) 478, 1075, 1498, 1736
PleI GAGTC 2 cut(s) 1099, 1291
PpsI GAGTC 2 cut(s) 1099, 1291
Ppu21I YACGTR 1 cut(s) 1088
Psp124BI GAGCTC 1 cut(s) 657
PspFI CCCAGC 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 916, 1344
PspPI GGNCC 3 cut(s) 466, 708, 1631
PstNI CAGNNNCTG 2 cut(s) 33, 869
PsuI RGATCY 1 cut(s) 1435
PsyI GACNNNGTC 1 cut(s) 617
RsaI GTAC 5 cut(s) 144, 817, 824, 862, 1762
RsaNI GTAC 5 cut(s) 143, 816, 823, 861, 1761
RseI CAYNNNNRTG 2 cut(s) 615, 629
SacI GAGCTC 1 cut(s) 657
SatI GCNGC 4 cut(s) 477, 1074, 1497, 1735
Sau3AI GATC 6 cut(s) 790, 973, 1165, 1192, 1435, 1531
Sau96I GGNCC 3 cut(s) 466, 708, 1631
SchI GAGTC 2 cut(s) 1100, 1291
SduI GDGCHC 4 cut(s) 8, 657, 934, 1282
SfaNI GCATC 5 cut(s) 586, 691, 950, 1399, 1454
SfcI CTRYAG 1 cut(s) 756
SinI GGWCC 1 cut(s) 708
SmiMI CAYNNNNRTG 2 cut(s) 615, 629
SmlI CTYRAG 3 cut(s) 461, 1077, 1520
SmoI CTYRAG 3 cut(s) 461, 1077, 1520
Sse9I AATT 5 cut(s) 102, 373, 587, 712, 1487
SsiI CCGC 2 cut(s) 336, 1735
SspI AATATT 2 cut(s) 638, 1378
SspMI CTAG 4 cut(s) 218, 347, 659, 1442
SstI GAGCTC 1 cut(s) 657
StyI CCWWGG 1 cut(s) 995
TaaI ACNGT 1 cut(s) 860
TaiI ACGT 2 cut(s) 1090, 1766
TaqI TCGA 4 cut(s) 96, 728, 984, 1057
TasI AATT 5 cut(s) 102, 373, 587, 712, 1487
TatI WGTACW 2 cut(s) 142, 860
TauI GCSGC 1 cut(s) 1737
TfiI GAWTC 3 cut(s) 162, 740, 989
TscAI CASTG 2 cut(s) 1155, 1360
TseFI GTSAC 3 cut(s) 13, 292, 1142
TseI GCWGC 3 cut(s) 476, 1073, 1496
Tsp45I GTSAC 3 cut(s) 13, 292, 1142
TspGWI ACGGA 1 cut(s) 1616
TspRI CASTG 2 cut(s) 1155, 1360
Tth111I GACNNNGTC 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 708
XapI RAATTY 3 cut(s) 373, 587, 1487
XcmI CCANNNNNNNNNTGG 1 cut(s) 502
XmiI GTMKAC 3 cut(s) 621, 667, 1010
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 4 cut(s) 218, 347, 659, 1442
Zsp2I ATGCAT 3 cut(s) 601, 1248, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.