Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

16269465 .. 16270714

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG182800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACAGCTGCACAAGCGTTAAGTCATCCCTGGCTTAAAAATTATAGCACTGTTAAAATTCCTCTGGACATATTAATATTCAAGCTCATGAAGATTTATATGCGCTCATCACCTCTCCGCAAAACTGCTTTAAGGGCTCTTTCCAAGACATTGACTGTTGATGAGCTTTGCTATTTGAAGGAGCAGTTTGCGCTTTTAGAACCAAACAAAAATGGCACAATAAGCTTAGAAAACATCAAAACGGCCTTGATGAAAAATGCAACTGATGCAATGAAGGAGGCACGAATTGCTGATTTTCTAGCATCGCTTAATGCATTGCAATACAGAAGGATGGATTTTGAGGAATTTTGTACAGCTGCACTAAGTGTCCACCAACTTGAGGCTCTGGACCGTTGGGAGCAACATGCTCGTTGTGCATATGAACTTTTTGACAAGGAAGGCAACAGGGCTATTGTCATTGAGGAACTGGCTTCGGAACTTGGTCTTGGCCCTTCTGTCCCTGTTCATGCGGTTCTTCATGATTGGATTAGGCACACCGACGGGAAGCTGAGTTTCCTTGGATTTGTGAAATTGTTGCATGGCGTATCTAGCCGGGTTGTTGCAAAAGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

204

Amino Acids

23.05

Weight (kDa)

8.72

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	118, 509
AcsI	RAATTY	2 cut(s)	57, 344
AdeI	CACNNNGTG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	82, 178
AjnI	CCWGG	1 cut(s)	29
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	7 cut(s)	8, 85, 166, 225, 356, 547, 608
AluI	AGCT	7 cut(s)	8, 85, 166, 225, 356, 547, 608
AoxI	GGCC	2 cut(s)	243, 487
ApeKI	GCWGC	2 cut(s)	8, 356
ApoI	RAATTY	2 cut(s)	57, 344
AseI	ATTAAT	1 cut(s)	74
AspLEI	GCGC	2 cut(s)	105, 193
AspS9I	GGNCC	2 cut(s)	388, 488
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	388
BanII	GRGCYC	1 cut(s)	139
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BciT130I	CCWGG	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	593
BfaI	CTAG	2 cut(s)	299, 588
BisI	GCNGC	2 cut(s)	9, 357
BlsI	GCNGC	2 cut(s)	10, 358
Bme1390I	CCNGG	2 cut(s)	31, 593
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	2 cut(s)	388, 488
BmrFI	CCNGG	2 cut(s)	31, 593
BmsI	GCATC	2 cut(s)	256, 311
BpuEI	CTTGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	2 cut(s)	29, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	471
Bse3DI	GCAATG	2 cut(s)	276, 314
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	29, 556
BseGI	GGATG	2 cut(s)	25, 336
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	2 cut(s)	276, 314
BseMII	CTCAG	1 cut(s)	539
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	342
BshFI	GGCC	2 cut(s)	245, 489
BsiSI	CCGG	1 cut(s)	592
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	245, 489
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp1407I	TGTACA	1 cut(s)	350
BspACI	CCGC	2 cut(s)	118, 509
BspANI	GGCC	2 cut(s)	245, 489
BspCNI	CTCAG	1 cut(s)	540
BspHI	TCATGA	2 cut(s)	87, 517
BsrDI	GCAATG	2 cut(s)	276, 314
BsrGI	TGTACA	1 cut(s)	350
BsrI	ACTGG	1 cut(s)	471
BssECI	CCNNGG	2 cut(s)	29, 556
BssT1I	CCWWGG	1 cut(s)	556
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	3 cut(s)	52, 157, 392
BstAPI	GCANNNNNTGC	2 cut(s)	266, 287
BstAUI	TGTACA	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	226, 362, 548
BstF5I	GGATG	2 cut(s)	25, 336
BstHHI	GCGC	2 cut(s)	105, 193
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 134, 190, 222, 266, 287, 413, 588
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	407
BstSCI	CCNGG	2 cut(s)	29, 591
BstV1I	GCAGC	1 cut(s)	343
BsuRI	GGCC	2 cut(s)	245, 489
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	25, 336
BtsIMutI	CAGTG	1 cut(s)	48
CciI	TCATGA	2 cut(s)	87, 517
CfoI	GCGC	2 cut(s)	105, 193
Cfr13I	GGNCC	2 cut(s)	388, 488
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	5 cut(s)	88, 404, 506, 518, 578
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	3 cut(s)	226, 362, 548
DraIII	CACNNNGTG	1 cut(s)	365
Eco130I	CCWWGG	1 cut(s)	556
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	139
ErhI	CCWWGG	1 cut(s)	556
FaeI	CATG	5 cut(s)	91, 407, 509, 521, 581
FaqI	GGGAC	1 cut(s)	482
FatI	CATG	5 cut(s)	87, 403, 505, 517, 577
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	9, 357
FokI	GGATG	2 cut(s)	12, 343
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	2 cut(s)	9, 357
FspBI	CTAG	2 cut(s)	299, 588
GlaI	GCGC	2 cut(s)	104, 192
GluI	GCNGC	2 cut(s)	9, 357
HaeIII	GGCC	2 cut(s)	245, 489
HapII	CCGG	1 cut(s)	592
HhaI	GCGC	2 cut(s)	105, 193
Hin1II	CATG	5 cut(s)	91, 407, 509, 521, 581
Hin6I	GCGC	2 cut(s)	103, 191
HinP1I	GCGC	2 cut(s)	103, 191
HindIII	AAGCTT	1 cut(s)	223
HpaII	CCGG	1 cut(s)	592
HphI	GGTGA	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	4 cut(s)	65, 88, 386, 518
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	5 cut(s)	172, 268, 321, 431, 501
HpyCH4III	ACNGT	3 cut(s)	52, 157, 392
HpyCH4V	TGCA	9 cut(s)	11, 260, 269, 314, 319, 359, 416, 577, 602
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 134, 190, 222, 266, 287, 413, 588
HpyF3I	CTNAG	3 cut(s)	226, 362, 548
Hsp92II	CATG	5 cut(s)	91, 407, 509, 521, 581
HspAI	GCGC	2 cut(s)	103, 191
LmnI	GCTCC	2 cut(s)	181, 397
LpnPI	CCDG	8 cut(s)	16, 43, 50, 371, 430, 452, 513, 605
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	2 cut(s)	256, 311
MaeI	CTAG	2 cut(s)	299, 588
MboII	GAAGA	2 cut(s)	103, 506
MhlI	GDGCHC	1 cut(s)	139
MluCI	AATT	5 cut(s)	40, 57, 285, 344, 569
MnlI	CCTC	6 cut(s)	72, 123, 271, 334, 373, 454
Mph1103I	ATGCAT	1 cut(s)	316
MseI	TTAA	6 cut(s)	20, 36, 54, 74, 131, 309
MspA1I	CMGCKG	2 cut(s)	8, 356
MspI	CCGG	1 cut(s)	592
MspR9I	CCNGG	2 cut(s)	31, 593
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	8 cut(s)	14, 134, 190, 222, 266, 287, 413, 588
NciI	CCSGG	1 cut(s)	593
NdeI	CATATG	1 cut(s)	418
NlaIII	CATG	5 cut(s)	91, 407, 509, 521, 581
NsiI	ATGCAT	1 cut(s)	316
NspI	RCATGY	1 cut(s)	407
PagI	TCATGA	2 cut(s)	87, 517
PkrI	GCNGC	2 cut(s)	10, 358
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	388, 488
PvuII	CAGCTG	2 cut(s)	8, 356
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	6 cut(s)	20, 36, 54, 74, 131, 309
SatI	GCNGC	2 cut(s)	9, 357
Sau96I	GGNCC	2 cut(s)	388, 488
ScrFI	CCNGG	2 cut(s)	31, 593
SduI	GDGCHC	1 cut(s)	139
SetI	ASST	8 cut(s)	10, 87, 115, 168, 227, 358, 549, 610
SfaNI	GCATC	2 cut(s)	256, 311
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	5 cut(s)	40, 57, 285, 344, 569
SsiI	CCGC	2 cut(s)	118, 509
SspI	AATATT	1 cut(s)	78
SspMI	CTAG	2 cut(s)	299, 588
StyD4I	CCNGG	2 cut(s)	29, 591
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	3 cut(s)	52, 157, 392
TasI	AATT	5 cut(s)	40, 57, 285, 344, 569
TatI	WGTACW	1 cut(s)	350
Tru1I	TTAA	6 cut(s)	20, 36, 54, 74, 131, 309
Tru9I	TTAA	6 cut(s)	20, 36, 54, 74, 131, 309
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	2 cut(s)	8, 356
TspDTI	ATGAA	6 cut(s)	104, 266, 287, 435, 494, 506
TspRI	CASTG	1 cut(s)	55
VpaK11BI	GGWCC	1 cut(s)	388
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	2 cut(s)	57, 344
XceI	RCATGY	1 cut(s)	407
XspI	CTAG	2 cut(s)	299, 588
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.