Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Reverse (-)

10593531 .. 10604901

Gene Structure 11371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3717 bp

ATGGCGTCGAGCTACAGAATGAGAGCCTCCACGTCTGCTTCATCGTCATCCACTCAACGGAAATACGACGTGTTTTTGAGTTTCAGGGGCGAAGATACCCGCAAGAAGTTCACAGACCATTTATACGACCAATTGCGGCGGCGAGGAATCAAAACTTTTCGGGACGACCCTGAACTTGAAATAGGTGCAACTATTTCTCCAGAGCTCCTGGCTGCAGTTGAACAATCAAGGTTTGCACTGGTTGTTCTCTCCCCAAACTATGCTTCTTCAACTTGGTGCTTGCTCGAACTCGCGAAAATTGTTCAGTGCATGGGCCAGAGGGGTACAATTCTGCCAATCTTTTATGAAGTGGTTCCCTCCGATGTAAGACATCAAAGAGGGAGCTTTGCGGAAGCGTTCGGTAAACATGAAAAGAAGTTTGGGAAAGACTTGACCAAGGTGCAAGAGTGGAGAGATGCTTTGACAAAAGTGGCTAATCTCTCTGGCTGGAGTTCCCTGAATTATAGATATGAAACAGAGCTTATCAAAGAGATTGTGGAAGCGCTATGGAAAAAAGTACATCCTACATTTGCATCATCAGAGTCCTCAGAGAATTTGGTCGGAATTGATTCCAAGCTGATTGAAATAGATTTTCTTTTAGAAAAAAAAGCAAAGGGTGTCTGCTTTCTAGGAATATGGGGTATGTGTGGGATTGGGAAGACAACCCTTGCTAGACTTGTTTATCACAGAATCTCTCATCATTTTGAAATTAGCATATTTCTTCCTGATGTCAGAGAGGTTTCTACAACACACGGTCTAGTTAATCTACAACAAAATCTTCTTTGCCAGATACTGAAGGAAAAAAACATTCAAGTATGGGATGTTGATGATGGAATGACCAAGATAAAGTGCTGTTTTTATAATAAAAAGGTTCTACTAGTTCTTGATGATGTGGATCAATTAGACCAACTGGAAAACTTGGCCGGAGAAGAAGACTGGTTTGGTTCAGGAAGCATAGTTATCGTTACAACAAGAGATCAACGTTTACTAGTCTTGCATGGTATAGAAACACAATACAAAAGCAAGGGATTAAATGAGTACGAAGCTCTTCAGCTCTTTAGTTGGAAAGCCTTTAAGAAAGATTATCCTGAAGAAGGTTATAGGGAACTGTCCAAGAGTATCTTGGATTATGCTAGAGGCCTTCCATTAGCTCTTAAGATTCTGGGATCTTTTCTGTGTAAGAGAGACCGAGGTGATTGGGAAAGTACAGTAGCCAAGCTAAAGAAAGCTCCTATTGATCAAGCACTGTTTAAAACACTCAAAATAAGTTATGATGGATTAGATAACATGAGCCAACAAGTTTTTCTCGATGTTGCATGTTTCCTCAAGGGGAATGACAAAGAACGAGTAATTCGAATACTAGATAGCTTTTTTGGCTTTGACACTAGTATCATGGCAAGTGTTCTCATTGAGAAATCCCTGTTAACCATTTTTGACAACTGTGTGGATATGCATGATCTGATACAAGAAATGGGAAGGGAAATTGTCCGTTTGGAGTCTGAGCAAGAGCCTGGCCAACGCAGTCAGTTGTGGCTTTGGGACGACATTTTTCATGTACTCAAAGAGAACACGGGAACAGAAGCAATTAGAAGCATAGCCATATGCTTGCCTAAGGTGGAAGAGTTCGATTGGAATCCAAAAGCCTTCTCTAAGATGTCTAAACTGAAGTTTCTCAAAATGCAAAATTTGGTTCTATGTCAAGGCCCTGAATATCTTCCTGATGCCATAAGGGTTCTTGAATGGGCTTGGTATCCATCAAAATCTCTTCCACCAAATTTTCAGCCGGTGGAACTTATTGAGATTATTCTGCATCATAGCAAAATTGAGCAGCTTTGGCATGGAATAAAGTACTTGGAGAAGTTGACAGTTATGGATCTTAGCTACTCCGAGAACTTGACAATGACCCCAGATTTCACAGGTATGCCAAACCTTGAGAGGCTGGTTCTTGAAGGTTGTACAAATTTAGTTGACATTCATCCATCAATCATATCTCTCAGAAGGCTTAAAGTTTTAAATTTTAAGAACTGCCAAAGTATTCAGAGAATTCCAGGTGGATTAGAAATGGATTCTCTTGAACTAATTGATCTTTCTGGCTGCTCAAAAGTGGATATACTTCCACAATTTGTCAGACGGATCCAAAAGTTATCAGAACTTTTTTTAAGAGGAATTGGCATGCTAAAGTTTGAACTATCATTTCATTCAGTCAGTCCTCACCGGCTGAGTCTGGTATTGGCTTCTTTCAAACATTTCTGTTCTCTGAAAGAATTACATCTCAATGACTGCAAACTTGGTGAAGGAGATATTCCCGATGATATTGGTTGTTTGTCCTCCTTAGAAAACTTGGATCTTAGTGTCAACAATTTTGTCAGCCTTCCTGCCAGCCTTAGTCGGCTTTCTAAGTTGAAGTATTTGAACTTGGATGATTGCAAGAGGCTCCAACAATTGCCAGACCTTCCATTATTTAGCGGCACATGTCATGTCACCGCGGACAACTGTATATCCTTAAAAAAGTTTCCAGATCCACCAGACCTGTGCAAATTATGGAAACTATCCTTCAACTTTATTAACTGCTGTAGCCTCGAAGACGGAGGAAGTTGTTATATAATACGTTCACTTCTACAGCGGTTCCTTCAGGAACCCCCTCCTTTTTTTGAGATGTTCAGTATAGTCATTCCTGGAAATGATATTCCTTGCTGGTTCAAACATCGAATTGTGGGAGATACGGTACTGGACTGTTCTTCACCTAGTAGTATGTGGATCGGATTTGCTCTATGTGTTCTTTTTGGAGCTGAAGAAAACCCAGGTGTCCCTGGTGAAGATCATGATTTCGAACCTCATGCAAAAGCAATTTCGTGTTGTTGGAAGCCCGGTGTTTTTTTTTTACCCAGTCTCAGTTTCGATCTAAACCAAGTTCTTAAGTCGGATCACATTTGTTTATTCCTTTTGCCTTCAAAACATTATCTTGAAAACATTGGTTTTCTTTTGGAAACCACGTGTGCTAAGAAAAGCAACGCATGCTTGAAGGTGAAGGGGTGCGGGGTTCGTGCTCTGTACAAGCAAGACCTGAAAGAACTCGTAGAACTCAACTTAAGAATGAATCGATACAATGGAGTTTCTGATAGGAATTTGGGTTGTATGATGAACAAACCCCCTCTTTTTACTGAGGAGTTCAGTTTCGTATTTTCTGGAAATGACATTCCTGAGTGGTTCGAAACTAGTGCGGAGAGCAACAGGGTGAACATAGACCGACCTTGTATTTCATGTAGTAGTACGTGGATGGGGTTTGCTTTGTGTGTTCTCTTTGGAGCTGAAGAAAACCCTGGTGCCCTTTGTGAAGATCGTGATTTAGAACCTCATGTACACAAAATTTCATGTCGTTGGATGCTCTCCTATGGCTCCATTGTTTTGAAACTAGAACAAGTTGTTCAGTTATCAGATCACCTCTGTGTATTTTTCGTTCCTGGGGATAAATGTCTGCTTACATGGAGATGGTTTACGTTTAAATTCAGAACCAGGTGTGCTAACAGGAACGCATGCCTGAAGGTGAAAGGGTGCGGGATCCGTAGTTTGTACATGCAGGACTTGAAAGAGCCCAACATAAGAGAGAACCAATACAACGTGTCTAAGAGGGATGGGGTTGCAGATTGGATCGAACAACTGAGATCGTCAATAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

1238

Amino Acids

141.36

Weight (kDa)

6.32

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	21 - 202	9.5e-58	TIR domain
TIR_2	PF13676	24 - 119	4e-16	TIR domain
NB-ARC	PF00931	210 - 374	6.5e-19	NB-ARC domain
WHD_ROQ1	PF23282	444 - 512	9.9e-15	Disease resistance protein Roq1-like, winged-helix domain
LRR_14	PF23598	759 - 826	5e-07	Leucine-rich repeat region
C-JID	PF20160	904 - 1035	7.7e-06	C-JID domain
C-JID	PF20160	1074 - 1208	3.6e-08	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	900
AccB1I	GGYRCC	1 cut(s)	3362
AccII	CGCG	2 cut(s)	293, 2525
AclI	AACGTT	1 cut(s)	1021
AcoI	YGGCCR	2 cut(s)	960, 1552
AcsI	RAATTY	9 cut(s)	592, 1723, 1813, 1999, 2053, 2082, 3163, 3405, 3542
AcuI	CTGAAG	8 cut(s)	854, 1073, 1149, 1724, 2654, 2850, 3369, 3599
AcvI	CACGTG	1 cut(s)	3033
AcyI	GRCGYC	1 cut(s)	5
AfeI	AGCGCT	1 cut(s)	543
AfiI	CCNNNNNNNGG	2 cut(s)	57, 1133
AflII	CTTAAG	3 cut(s)	1193, 2954, 3127
AflIII	ACRYGT	4 cut(s)	69, 2510, 3032, 3657
AhlI	ACTAGT	4 cut(s)	916, 1027, 1424, 3254
AjiI	CACGTC	2 cut(s)	33, 70
AjnI	CCWGG	9 cut(s)	207, 1549, 2086, 2713, 2839, 2848, 3358, 3499, 3551
AjuI	GAANNNNNNNTTGG	8 cut(s)	247, 279, 402, 434, 963, 995, 1326, 1358
AleI	CACNNNNGTG	1 cut(s)	3483
Alw21I	GWGCWC	2 cut(s)	207, 3088
Alw26I	GTCTC	2 cut(s)	1218, 2933
AlwNI	CAGNNNCTG	1 cut(s)	832
Aor51HI	AGCGCT	1 cut(s)	543
AoxI	GGCC	5 cut(s)	313, 960, 1177, 1552, 1741
ApeKI	GCWGC	3 cut(s)	212, 1867, 2133
ApoI	RAATTY	9 cut(s)	592, 1723, 1813, 1999, 2053, 2082, 3163, 3405, 3542
Asp700I	GAANNNNTTC	4 cut(s)	351, 607, 1086, 1752
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	2 cut(s)	313, 1742
AsuC2I	CCSGG	1 cut(s)	2907
AsuII	TTCGAA	3 cut(s)	1393, 2868, 3249
AxyI	CCTNAGG	1 cut(s)	1650
BaeGI	GKGCMC	1 cut(s)	3367
BaeI	ACNNNNGTAYC	2 cut(s)	1411, 1444
BalI	TGGCCA	1 cut(s)	1554
BamHI	GGATCC	2 cut(s)	2172, 3597
BanI	GGYRCC	1 cut(s)	3362
BanII	GRGCYC	2 cut(s)	207, 3633
BbrPI	CACGTG	1 cut(s)	3033
BbsI	GAAGAC	3 cut(s)	704, 978, 2628
Bbv12I	GWGCWC	2 cut(s)	207, 3088
BbvI	GCAGC	3 cut(s)	199, 1879, 2120
BccI	CCATC	7 cut(s)	863, 1307, 1801, 2026, 3310, 3522, 3665
BcgI	CGANNNNNNTGC	6 cut(s)	982, 1016, 2858, 2892, 3239, 3273
BciT130I	CCWGG	9 cut(s)	209, 1551, 2088, 2715, 2841, 2850, 3360, 3501, 3553
BciVI	GTATCC	1 cut(s)	1800
BclI	TGATCA	1 cut(s)	1276
BcnI	CCSGG	1 cut(s)	2907
BcoDI	GTCTC	2 cut(s)	1218, 2933
BcuI	ACTAGT	4 cut(s)	916, 1027, 1424, 3254
BfmI	CTRYAG	4 cut(s)	13, 213, 2611, 2657
BfoI	RGCGCY	1 cut(s)	545
BfrI	CTTAAG	3 cut(s)	1193, 2954, 3127
BfuI	GTATCC	1 cut(s)	1800
BisI	GCNGC	6 cut(s)	137, 140, 213, 1868, 2134, 2506
BlsI	GCNGC	6 cut(s)	138, 141, 214, 1869, 2135, 2507
BmcAI	AGTACT	1 cut(s)	1889
BmgBI	CACGTC	2 cut(s)	33, 70
BmgT120I	GGNCC	2 cut(s)	313, 1742
BmiI	GGNNCC	8 cut(s)	354, 2174, 2474, 2666, 2676, 3364, 3436, 3599
BmrI	ACTGGG	1 cut(s)	2919
BmsI	GCATC	5 cut(s)	445, 581, 1750, 1858, 3411
BmuI	ACTGGG	1 cut(s)	2919
BpiI	GAAGAC	3 cut(s)	704, 978, 2628
BpmI	CTGGAG	2 cut(s)	183, 508
Bpu14I	TTCGAA	3 cut(s)	1393, 2868, 3249
BpuEI	CTTGAG	2 cut(s)	1349, 1991
BpuMI	CCSGG	1 cut(s)	2907
Bsa29I	ATCGAT	1 cut(s)	3139
BsaAI	YACGTR	2 cut(s)	3033, 3312
BsaBI	GATNNNNATC	2 cut(s)	933, 1671
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	1 cut(s)	1218
BsaJI	CCNNGG	7 cut(s)	435, 1228, 2523, 2839, 2848, 3358, 3500
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 2748, 2778
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 1133
Bse118I	RCCGGY	2 cut(s)	1822, 2253
Bse1I	ACTGG	5 cut(s)	243, 954, 980, 2772, 2925
Bse21I	CCTNAGG	1 cut(s)	1650
Bse8I	GATNNNNATC	2 cut(s)	933, 1671
BseBI	CCWGG	9 cut(s)	209, 1551, 2088, 2715, 2841, 2850, 3360, 3501, 3553
BseCI	ATCGAT	1 cut(s)	3139
BseDI	CCNNGG	7 cut(s)	435, 1228, 2523, 2839, 2848, 3358, 3500
BseGI	GGATG	8 cut(s)	47, 559, 865, 2014, 2464, 3321, 3426, 3676
BseJI	GATNNNNATC	2 cut(s)	933, 1671
BseLI	CCNNNNNNNGG	2 cut(s)	57, 1133
BseMII	CTCAG	8 cut(s)	600, 1530, 2047, 2249, 2944, 3192, 3231, 3689
BseNI	ACTGG	5 cut(s)	243, 954, 980, 2772, 2925
BseRI	GAGGAG	1 cut(s)	3218
BseSI	GKGCMC	1 cut(s)	3367
BseXI	GCAGC	3 cut(s)	199, 1879, 2120
Bsh1236I	CGCG	2 cut(s)	293, 2525
BshFI	GGCC	5 cut(s)	315, 962, 1179, 1554, 1743
BshNI	GGYRCC	1 cut(s)	3362
BshVI	ATCGAT	1 cut(s)	3139
BsiHKAI	GWGCWC	2 cut(s)	207, 3088
BsiSI	CCGG	4 cut(s)	963, 1823, 2254, 2907
BslFI	GGGAC	3 cut(s)	176, 1592, 2831
BslI	CCNNNNNNNGG	2 cut(s)	57, 1133
BsmAI	GTCTC	2 cut(s)	1218, 2933
BsmFI	GGGAC	3 cut(s)	176, 1592, 2831
BsnI	GGCC	5 cut(s)	315, 962, 1179, 1554, 1743
Bso31I	GGTCTC	1 cut(s)	1218
Bsp119I	TTCGAA	3 cut(s)	1393, 2868, 3249
Bsp1286I	GDGCHC	4 cut(s)	207, 3088, 3367, 3633
Bsp1407I	TGTACA	4 cut(s)	1994, 3090, 3397, 3609
Bsp68I	TCGCGA	1 cut(s)	293
BspANI	GGCC	5 cut(s)	315, 962, 1179, 1554, 1743
BspCNI	CTCAG	8 cut(s)	599, 1531, 2046, 2250, 2943, 3193, 3232, 3690
BspDI	ATCGAT	1 cut(s)	3139
BspFNI	CGCG	2 cut(s)	293, 2525
BspHI	TCATGA	1 cut(s)	2860
BspLI	GGNNCC	8 cut(s)	354, 2174, 2474, 2666, 2676, 3364, 3436, 3599
BspMAI	CTGCAG	1 cut(s)	217
BspQI	GCTCTTC	1 cut(s)	1092
BspT104I	TTCGAA	3 cut(s)	1393, 2868, 3249
BspT107I	GGYRCC	1 cut(s)	3362
BspTI	CTTAAG	3 cut(s)	1193, 2954, 3127
BspTNI	GGTCTC	1 cut(s)	1218
BsrFI	RCCGGY	2 cut(s)	1822, 2253
BsrGI	TGTACA	4 cut(s)	1994, 3090, 3397, 3609
BsrI	ACTGG	5 cut(s)	243, 954, 980, 2772, 2925
BssAI	RCCGGY	2 cut(s)	1822, 2253
BssECI	CCNNGG	7 cut(s)	435, 1228, 2523, 2839, 2848, 3358, 3500
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	435
Bst2UI	CCWGG	9 cut(s)	209, 1551, 2088, 2715, 2841, 2850, 3360, 3501, 3553
Bst4CI	ACNGT	9 cut(s)	794, 1149, 1249, 1287, 1481, 1906, 2534, 2764, 2774
Bst6I	CTCTTC	3 cut(s)	1092, 1653, 1809
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	3 cut(s)	1193, 2954, 3127
BstAPI	GCANNNNNTGC	1 cut(s)	3054
BstAUI	TGTACA	4 cut(s)	1994, 3090, 3397, 3609
BstBAI	YACGTR	2 cut(s)	3033, 3312
BstBI	TTCGAA	3 cut(s)	1393, 2868, 3249
BstC8I	GCNNGC	6 cut(s)	281, 1646, 2213, 2419, 3055, 3574
BstDSI	CCRYGG	1 cut(s)	2523
BstENI	CCTNNNNNAGG	1 cut(s)	1131
BstF5I	GGATG	8 cut(s)	47, 559, 865, 2014, 2464, 3321, 3426, 3676
BstFNI	CGCG	2 cut(s)	293, 2525
BstH2I	RGCGCY	1 cut(s)	545
BstHHI	GCGC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	1218, 2933
BstMWI	GCNNNNNNNGC	3 cut(s)	1413, 1873, 3054
BstNI	CCWGG	9 cut(s)	209, 1551, 2088, 2715, 2841, 2850, 3360, 3501, 3553
BstNSI	RCATGY	6 cut(s)	1359, 2215, 2514, 3057, 3576, 3616
BstSFI	CTRYAG	4 cut(s)	13, 213, 2611, 2657
BstSLI	GKGCMC	1 cut(s)	3367
BstUI	CGCG	2 cut(s)	293, 2525
BstV1I	GCAGC	3 cut(s)	199, 1879, 2120
BstV2I	GAAGAC	3 cut(s)	704, 978, 2628
BstX2I	RGATCY	6 cut(s)	1205, 1912, 2172, 2383, 2557, 3597
BstYI	RGATCY	6 cut(s)	1205, 1912, 2172, 2383, 2557, 3597
Bsu15I	ATCGAT	1 cut(s)	3139
Bsu36I	CCTNAGG	1 cut(s)	1650
BsuI	GTATCC	1 cut(s)	1800
BsuRI	GGCC	5 cut(s)	315, 962, 1179, 1554, 1743
BsuTUI	ATCGAT	1 cut(s)	3139
BtgI	CCRYGG	1 cut(s)	2523
BtrI	CACGTC	2 cut(s)	33, 70
BtsCI	GGATG	8 cut(s)	47, 559, 865, 2014, 2464, 3321, 3426, 3676
BtsIMutI	CAGTG	3 cut(s)	236, 311, 1283
BtuMI	TCGCGA	1 cut(s)	293
Cac8I	GCNNGC	6 cut(s)	281, 1646, 2213, 2419, 3055, 3574
CaiI	CAGNNNCTG	1 cut(s)	832
CciI	TCATGA	1 cut(s)	2860
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	2 cut(s)	1822, 2253
Cfr13I	GGNCC	2 cut(s)	313, 1742
Cfr42I	CCGCGG	1 cut(s)	2526
ClaI	ATCGAT	1 cut(s)	3139
CsiI	ACCWGGT	1 cut(s)	3551
DraI	TTTAAA	3 cut(s)	1291, 2052, 3541
EaeI	YGGCCR	2 cut(s)	960, 1552
Eam1104I	CTCTTC	3 cut(s)	1092, 1653, 1809
EarI	CTCTTC	3 cut(s)	1092, 1653, 1809
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	435
Eco147I	AGGCCT	1 cut(s)	1179
Eco24I	GRGCYC	2 cut(s)	207, 3633
Eco31I	GGTCTC	1 cut(s)	1218
Eco47III	AGCGCT	1 cut(s)	543
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	8 cut(s)	854, 1073, 1149, 1724, 2654, 2850, 3369, 3599
Eco72I	CACGTG	1 cut(s)	3033
Eco81I	CCTNAGG	1 cut(s)	1650
EcoICRI	GAGCTC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	1131
EcoO109I	RGGNCCY	1 cut(s)	1742
EcoRI	GAATTC	1 cut(s)	2082
EcoRII	CCWGG	9 cut(s)	207, 1549, 2086, 2713, 2839, 2848, 3358, 3499, 3551
EcoT14I	CCWWGG	1 cut(s)	435
EcoT22I	ATGCAT	1 cut(s)	1494
EcoT38I	GRGCYC	2 cut(s)	207, 3633
ErhI	CCWWGG	1 cut(s)	435
FalI	AAGNNNNNCTT	2 cut(s)	1145, 1177
FaqI	GGGAC	3 cut(s)	176, 1592, 2831
FauI	CCCGC	3 cut(s)	107, 3068, 3587
FauNDI	CATATG	1 cut(s)	1640
FbaI	TGATCA	1 cut(s)	1276
Fnu4HI	GCNGC	6 cut(s)	137, 140, 213, 1868, 2134, 2506
FokI	GGATG	8 cut(s)	34, 546, 872, 2001, 2471, 3328, 3433, 3683
FriOI	GRGCYC	2 cut(s)	207, 3633
Fsp4HI	GCNGC	6 cut(s)	137, 140, 213, 1868, 2134, 2506
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	6 cut(s)	137, 140, 213, 1868, 2134, 2506
GsuI	CTGGAG	2 cut(s)	183, 508
HaeII	RGCGCY	1 cut(s)	545
HaeIII	GGCC	5 cut(s)	315, 962, 1179, 1554, 1743
HapII	CCGG	4 cut(s)	963, 1823, 2254, 2907
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	4 cut(s)	1464, 1902, 2008, 2395
HindII	GTYRAC	4 cut(s)	1464, 1902, 2008, 2395
HpaI	GTTAAC	1 cut(s)	1464
HpaII	CCGG	4 cut(s)	963, 1823, 2254, 2907
Hpy99I	CGWCG	2 cut(s)	10, 71
HpyCH4III	ACNGT	9 cut(s)	794, 1149, 1249, 1287, 1481, 1906, 2534, 2764, 2774
HpyCH4IV	ACGT	8 cut(s)	32, 69, 1021, 2647, 3032, 3311, 3536, 3657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1413, 1873, 3054
HpySE526I	ACGT	8 cut(s)	32, 69, 1021, 2647, 3032, 3311, 3536, 3657
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	542
Ksp22I	TGATCA	1 cut(s)	1276
KspAI	GTTAAC	1 cut(s)	1464
KspI	CCGCGG	1 cut(s)	2526
LguI	GCTCTTC	1 cut(s)	1092
LmnI	GCTCC	7 cut(s)	210, 381, 1273, 2478, 2825, 3344, 3440
Lsp1109I	GCAGC	3 cut(s)	199, 1879, 2120
LweI	GCATC	5 cut(s)	445, 581, 1750, 1858, 3411
MabI	ACCWGGT	1 cut(s)	3551
MaeII	ACGT	8 cut(s)	32, 69, 1021, 2647, 3032, 3311, 3536, 3657
MaeIII	GTNAC	2 cut(s)	1003, 2518
MfeI	CAATTG	2 cut(s)	131, 2480
MflI	RGATCY	6 cut(s)	1205, 1912, 2172, 2383, 2557, 3597
MhlI	GDGCHC	4 cut(s)	207, 3088, 3367, 3633
MlsI	TGGCCA	1 cut(s)	1554
MluNI	TGGCCA	1 cut(s)	1554
MlyI	GAGTC	3 cut(s)	590, 1544, 2269
MmeI	TCCRAC	6 cut(s)	580, 1082, 2500, 2879, 2940, 3398
Mox20I	TGGCCA	1 cut(s)	1554
Mph1103I	ATGCAT	1 cut(s)	1494
MroXI	GAANNNNTTC	4 cut(s)	351, 607, 1086, 1752
MscI	TGGCCA	1 cut(s)	1554
MslI	CAYNNNNRTG	4 cut(s)	1958, 2313, 3483, 3526
Msp20I	TGGCCA	1 cut(s)	1554
MspA1I	CMGCKG	2 cut(s)	2525, 2662
MspCI	CTTAAG	3 cut(s)	1193, 2954, 3127
MspI	CCGG	4 cut(s)	963, 1823, 2254, 2907
MunI	CAATTG	2 cut(s)	131, 2480
MvaI	CCWGG	9 cut(s)	209, 1551, 2088, 2715, 2841, 2850, 3360, 3501, 3553
MvnI	CGCG	2 cut(s)	293, 2525
MwoI	GCNNNNNNNGC	3 cut(s)	1413, 1873, 3054
NciI	CCSGG	1 cut(s)	2907
NdeI	CATATG	1 cut(s)	1640
NlaIV	GGNNCC	8 cut(s)	354, 2174, 2474, 2666, 2676, 3364, 3436, 3599
NmuCI	GTSAC	1 cut(s)	2518
NruI	TCGCGA	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	1494
NspI	RCATGY	6 cut(s)	1359, 2215, 2514, 3057, 3576, 3616
NspV	TTCGAA	3 cut(s)	1393, 2868, 3249
OliI	CACNNNNGTG	1 cut(s)	3483
PaeI	GCATGC	3 cut(s)	2215, 3057, 3576
PagI	TCATGA	1 cut(s)	2860
PceI	AGGCCT	1 cut(s)	1179
PciI	ACATGT	1 cut(s)	2510
PciSI	GCTCTTC	1 cut(s)	1092
PcsI	WCGNNNNNNNCGW	1 cut(s)	1390
PdmI	GAANNNNTTC	4 cut(s)	351, 607, 1086, 1752
PfeI	GAWTC	7 cut(s)	147, 608, 729, 1198, 1672, 2105, 3136
PfoI	TCCNGGA	1 cut(s)	2713
PkrI	GCNGC	6 cut(s)	138, 141, 214, 1869, 2135, 2507
PleI	GAGTC	3 cut(s)	589, 1543, 2268
PmaCI	CACGTG	1 cut(s)	3033
PmlI	CACGTG	1 cut(s)	3033
PpsI	GAGTC	3 cut(s)	589, 1543, 2268
Ppu21I	YACGTR	2 cut(s)	3033, 3312
PscI	ACATGT	1 cut(s)	2510
PsiI	TTATAA	1 cut(s)	900
Psp124BI	GAGCTC	1 cut(s)	207
Psp1406I	AACGTT	1 cut(s)	1021
Psp6I	CCWGG	9 cut(s)	207, 1549, 2086, 2713, 2839, 2848, 3358, 3499, 3551
PspCI	CACGTG	1 cut(s)	3033
PspGI	CCWGG	9 cut(s)	207, 1549, 2086, 2713, 2839, 2848, 3358, 3499, 3551
PspN4I	GGNNCC	8 cut(s)	354, 2174, 2474, 2666, 2676, 3364, 3436, 3599
PspPI	GGNCC	2 cut(s)	313, 1742
PsrI	GAACNNNNNNTAC	4 cut(s)	3381, 3413, 3480, 3512
PstI	CTGCAG	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	832
PsuI	RGATCY	6 cut(s)	1205, 1912, 2172, 2383, 2557, 3597
RruI	TCGCGA	1 cut(s)	293
RseI	CAYNNNNRTG	4 cut(s)	1958, 2313, 3483, 3526
SacI	GAGCTC	1 cut(s)	207
SacII	CCGCGG	1 cut(s)	2526
SapI	GCTCTTC	1 cut(s)	1092
SatI	GCNGC	6 cut(s)	137, 140, 213, 1868, 2134, 2506
Sau96I	GGNCC	2 cut(s)	313, 1742
ScaI	AGTACT	1 cut(s)	1889
SchI	GAGTC	3 cut(s)	590, 1544, 2269
SduI	GDGCHC	4 cut(s)	207, 3088, 3367, 3633
SexAI	ACCWGGT	1 cut(s)	3551
SfaNI	GCATC	5 cut(s)	445, 581, 1750, 1858, 3411
SfcI	CTRYAG	4 cut(s)	13, 213, 2611, 2657
Sfr303I	CCGCGG	1 cut(s)	2526
SfuI	TTCGAA	3 cut(s)	1393, 2868, 3249
SgrBI	CCGCGG	1 cut(s)	2526
SmiMI	CAYNNNNRTG	4 cut(s)	1958, 2313, 3483, 3526
SmlI	CTYRAG	5 cut(s)	1193, 1364, 1970, 2954, 3127
SmoI	CTYRAG	5 cut(s)	1193, 1364, 1970, 2954, 3127
SpeI	ACTAGT	4 cut(s)	916, 1027, 1424, 3254
SphI	GCATGC	3 cut(s)	2215, 3057, 3576
SseBI	AGGCCT	1 cut(s)	1179
SstI	GAGCTC	1 cut(s)	207
StuI	AGGCCT	1 cut(s)	1179
StyI	CCWWGG	1 cut(s)	435
TaaI	ACNGT	9 cut(s)	794, 1149, 1249, 1287, 1481, 1906, 2534, 2764, 2774
TaiI	ACGT	8 cut(s)	35, 72, 1024, 2650, 3035, 3314, 3539, 3660
TaqII	GACCGA	2 cut(s)	1242, 3300
TatI	WGTACW	8 cut(s)	556, 1244, 1594, 1887, 1994, 3090, 3397, 3609
TauI	GCSGC	3 cut(s)	139, 142, 2508
TfiI	GAWTC	7 cut(s)	147, 608, 729, 1198, 1672, 2105, 3136
TscAI	CASTG	3 cut(s)	243, 311, 1290
TseFI	GTSAC	1 cut(s)	2518
TseI	GCWGC	3 cut(s)	212, 1867, 2133
Tsp45I	GTSAC	1 cut(s)	2518
TspGWI	ACGGA	5 cut(s)	73, 1517, 2185, 2640, 3590
TspRI	CASTG	3 cut(s)	243, 311, 1290
Vha464I	CTTAAG	3 cut(s)	1193, 2954, 3127
XagI	CCTNNNNNAGG	1 cut(s)	1131
XapI	RAATTY	9 cut(s)	592, 1723, 1813, 1999, 2053, 2082, 3163, 3405, 3542
XceI	RCATGY	6 cut(s)	1359, 2215, 2514, 3057, 3576, 3616
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XmnI	GAANNNNTTC	4 cut(s)	351, 607, 1086, 1752
ZrmI	AGTACT	1 cut(s)	1889
Zsp2I	ATGCAT	1 cut(s)	1494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.