Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

16513569 .. 16524043

Gene Structure 10475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAGGACACATTGGTTTCAACAATAGACATAGATCAGGAGGTCGAGGGAATTGAAGGGAGTGGTGTTAAAGAAAATCAACCTGACATTAAAGGTTCATGCGAAGTACATGAACCTCCATCCCGATTCTTCAAGAGGCCGTTCTCAGTTCCTTCACCAGCAAATCATATGAGGGCGCTTCTAGCAAGGGTGCTGGGGTTTTTTAAGTGGAAGGAGCAGGGTAGCATGACAAGGCTTCAGAAGAGTTTCGGGTATGTGACTGGAGAACAGGTTAAGGAGCTTGGAGAACAGGTTGAGGGCGGAACGGGGCTAGATAAGAGCTTTGGGTTCTCAAAGAATTTGATTAAAATGTATGAGCATGGAAGTATGGTTGGGTTCGGGCATTTTTCCTACACTTGCATAGCTACTTTTAAGAAGGGAAAGCTTGAGGGCCACCATGCTGCTGTCAAGGTCATCTCTAAAGCCAAGATGGCTACTGCTATTGCCATTGATGATGTGAGAAGGGAAGCAAAGATATTGAGGGCTTTGAAAGGACATAACAATATAGTAAAATTTTATGATGCATATGAAGACCATGACAATGTCTACATAGTGATGGAATATTGTGCAGGAGGGGAGCTCCTAGATAGTATACTTGCAAGGGGTGGGAAATACCCCGAGGATGATGCCAGGACCGTCGTGATGCAAATATTAAGTGTTGTGGCGTTTTGCCACCTCCAGTGTGTGGTTCATAGGGATCTTAAACCTGAGGCTCTTTCCAAGACATTGACTCCGGATGACCTTTCTTATATGGAGGAGCAGTTTGAACAACTGGAACCAGACGGCAGTGGCACAATAGGCTTAGAAAATATTAAAACGGCCTTGATGAAAAATGCAACTGATGCAATGAAAGAGGGACGATATGAGGATCTTCTTGCATCAGTAGGTGCCTTGACTATTGTTGTGCAGTTGATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

319

Amino Acids

35.36

Weight (kDa)

5.85

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	118 - 250	3.4e-29	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	122 - 247	1.3e-16	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	926
AccB7I	CCANNNNNTGG	1 cut(s)	724
AccI	GTMKAC	2 cut(s)	585, 631
AccIII	TCCGGA	1 cut(s)	772
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	2 cut(s)	744, 915
AcsI	RAATTY	2 cut(s)	337, 551
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	5 cut(s)	21, 56, 133, 529, 806
AjnI	CCWGG	1 cut(s)	668
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	5 cut(s)	280, 321, 404, 424, 619
AluI	AGCT	5 cut(s)	280, 321, 404, 424, 619
Alw21I	GWGCWC	1 cut(s)	621
AlwI	GGATC	2 cut(s)	744, 915
Ama87I	CYCGRG	1 cut(s)	656
Aor13HI	TCCGGA	1 cut(s)	772
AoxI	GGCC	3 cut(s)	137, 430, 858
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	337, 551
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	2 cut(s)	430, 672
AsuHPI	GGTGA	1 cut(s)	147
AvaI	CYCGRG	1 cut(s)	656
AvaII	GGWCC	1 cut(s)	672
AxyI	CCTNAGG	1 cut(s)	747
BanI	GGYRCC	1 cut(s)	926
BanII	GRGCYC	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	127, 463, 589
BceAI	ACGGC	3 cut(s)	124, 838, 873
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	1 cut(s)	670
BfaI	CTAG	4 cut(s)	182, 311, 623, 958
BfoI	RGCGCY	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	670
Bme18I	GGWCC	1 cut(s)	672
BmeT110I	CYCGRG	1 cut(s)	656
BmgT120I	GGNCC	2 cut(s)	430, 672
BmiI	GGNNCC	2 cut(s)	816, 928
BmrFI	CCNGG	1 cut(s)	670
BmsI	GCATC	5 cut(s)	550, 655, 672, 871, 926
BpiI	GAAGAC	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	603, 635
BpmI	CTGGAG	2 cut(s)	282, 701
BpuEI	CTTGAG	1 cut(s)	446
BsaJI	CCNNGG	1 cut(s)	657
BsaWI	WCCGGW	1 cut(s)	772
BsaXI	ACNNNNNCTCC	8 cut(s)	255, 276, 285, 306, 754, 784, 785, 815
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	3 cut(s)	265, 718, 816
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	772
BseBI	CCWGG	1 cut(s)	670
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	3 cut(s)	119, 667, 781
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	2 cut(s)	159, 738
BseNI	ACTGG	3 cut(s)	265, 718, 816
BseRI	GAGGAG	1 cut(s)	809
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	193
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	3 cut(s)	139, 432, 860
BshNI	GGYRCC	1 cut(s)	926
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	656
BsiSI	CCGG	1 cut(s)	773
BslFI	GGGAC	1 cut(s)	909
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	909
BsnI	GGCC	3 cut(s)	139, 432, 860
BsoBI	CYCGRG	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp13I	TCCGGA	1 cut(s)	772
Bsp143I	GATC	3 cut(s)	34, 736, 907
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	3 cut(s)	139, 432, 860
BspCNI	CTCAG	2 cut(s)	158, 739
BspEI	TCCGGA	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	816, 928
BspPI	GGATC	2 cut(s)	744, 915
BspT107I	GGYRCC	1 cut(s)	926
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	3 cut(s)	265, 718, 816
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	3 cut(s)	34, 736, 907
BssNAI	GTATAC	1 cut(s)	632
Bst1107I	GTATAC	1 cut(s)	632
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	1 cut(s)	676
Bst6I	CTCTTC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	881
BstDEI	CTNAG	3 cut(s)	145, 747, 841
BstF5I	GGATG	3 cut(s)	119, 667, 781
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	3 cut(s)	37, 739, 910
BstMBI	GATC	3 cut(s)	34, 736, 907
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 470, 837, 881
BstNI	CCWGG	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	668
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	576
BstX2I	RGATCY	2 cut(s)	736, 907
BstYI	RGATCY	2 cut(s)	736, 907
BstZ17I	GTATAC	1 cut(s)	632
Bsu36I	CCTNAGG	1 cut(s)	747
BsuRI	GGCC	3 cut(s)	139, 432, 860
BtsCI	GGATG	3 cut(s)	119, 667, 781
BtsI	GCAGTG	1 cut(s)	832
BtsIMutI	CAGTG	2 cut(s)	725, 832
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	2 cut(s)	430, 672
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	6 cut(s)	99, 110, 226, 359, 437, 575
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	145, 747, 841
DpnI	GATC	3 cut(s)	36, 738, 909
DpnII	GATC	3 cut(s)	34, 736, 907
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	315
Ecl136II	GAGCTC	1 cut(s)	619
Eco24I	GRGCYC	1 cut(s)	621
Eco47I	GGWCC	1 cut(s)	672
Eco53kI	GAGCTC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	221
Eco81I	CCTNAGG	1 cut(s)	747
Eco88I	CYCGRG	1 cut(s)	656
EcoICRI	GAGCTC	1 cut(s)	619
EcoRII	CCWGG	1 cut(s)	668
EcoT22I	ATGCAT	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	621
FaeI	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
FaqI	GGGAC	1 cut(s)	909
FatI	CATG	6 cut(s)	98, 109, 225, 358, 436, 574
FauNDI	CATATG	2 cut(s)	168, 565
FblI	GTMKAC	2 cut(s)	585, 631
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	3 cut(s)	106, 674, 788
FriOI	GRGCYC	1 cut(s)	621
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	4 cut(s)	182, 311, 623, 958
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	2 cut(s)	282, 701
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	3 cut(s)	139, 432, 860
HapII	CCGG	1 cut(s)	773
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	2 cut(s)	126, 769
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	2 cut(s)	586, 632
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	5 cut(s)	38, 123, 133, 679, 773
Hpy8I	GTNNAC	2 cut(s)	586, 632
Hpy99I	CGWCG	1 cut(s)	680
HpyAV	CCTTC	5 cut(s)	50, 162, 205, 409, 495
HpyCH4III	ACNGT	1 cut(s)	676
HpyCH4V	TGCA	9 cut(s)	399, 563, 608, 638, 685, 875, 884, 917, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 470, 837, 881
HpyF3I	CTNAG	3 cut(s)	145, 747, 841
Hsp92II	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
HspAI	GCGC	1 cut(s)	176
Kpn2I	TCCGGA	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	34, 736, 907
LmnI	GCTCC	5 cut(s)	214, 277, 616, 624, 796
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	5 cut(s)	550, 655, 672, 871, 926
MaeI	CTAG	4 cut(s)	182, 311, 623, 958
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	3 cut(s)	36, 738, 909
MboI	GATC	3 cut(s)	34, 736, 907
MboII	GAAGA	4 cut(s)	121, 253, 581, 902
MflI	RGATCY	2 cut(s)	736, 907
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	3 cut(s)	51, 337, 551
MlyI	GAGTC	1 cut(s)	763
Mph1103I	ATGCAT	1 cut(s)	565
MroI	TCCGGA	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	245
MslI	CAYNNNNRTG	2 cut(s)	579, 593
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	4 cut(s)	182, 470, 837, 881
NdeI	CATATG	2 cut(s)	168, 565
NdeII	GATC	3 cut(s)	34, 736, 907
NlaIII	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
NlaIV	GGNNCC	2 cut(s)	816, 928
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	581
PflMI	CCANNNNNTGG	1 cut(s)	724
PkrI	GCNGC	1 cut(s)	442
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
Psp124BI	GAGCTC	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	668
PspN4I	GGNNCC	2 cut(s)	816, 928
PspPI	GGNCC	2 cut(s)	430, 672
PsuI	RGATCY	2 cut(s)	736, 907
PsyI	GACNNNGTC	1 cut(s)	581
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	579, 593
SacI	GAGCTC	1 cut(s)	621
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	3 cut(s)	34, 736, 907
Sau96I	GGNCC	2 cut(s)	430, 672
SchI	GAGTC	1 cut(s)	763
ScrFI	CCNGG	1 cut(s)	670
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	5 cut(s)	550, 655, 672, 871, 926
SinI	GGWCC	1 cut(s)	672
SmiMI	CAYNNNNRTG	2 cut(s)	579, 593
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	51, 337, 551
SsiI	CCGC	1 cut(s)	300
SspI	AATATT	3 cut(s)	602, 690, 850
SspMI	CTAG	4 cut(s)	182, 311, 623, 958
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	668
TaaI	ACNGT	1 cut(s)	676
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	51, 337, 551
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	126
TscAI	CASTG	2 cut(s)	725, 832
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	7 cut(s)	17, 87, 126, 582, 719, 881, 902
TspRI	CASTG	2 cut(s)	725, 832
Tth111I	GACNNNGTC	1 cut(s)	581
Van91I	CCANNNNNTGG	1 cut(s)	724
VpaK11BI	GGWCC	1 cut(s)	672
XapI	RAATTY	2 cut(s)	337, 551
XmiI	GTMKAC	2 cut(s)	585, 631
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	4 cut(s)	182, 311, 623, 958
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.