Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

15654260 .. 15663206

Gene Structure 8947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017361

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGACATTGGTTGTGGTGAAGGAAACCTTCACCACAGTGAAGCGAATTGAAGACAATGGTACTGGAAAAGAAGAGAAAGTTGAGGGCGTAACACAGCTAGATACCAGCTTTTGGTTCTCAAAGAATTTGAGTAGAAAGTATGAGCTTGGAGACGAGGTTGGGAGAAGGACTTTTTCCTACACTTGCAAAGCTAAGTTTAAGACAGGCACACTCAAGGGCCAACATGCTGCTGTCAAGATGACTACTGCTATTGACATTGATGATGTGAGAAGGGAAGTAAAGATATTGAAATCTTTGACTGGACATAACAATATAGTAAATTTTTTTGATGCATATGAAGACCACGACAACATATTGTGCAGGAGGGGAGCTCCTATAGATAGGATACTTGCATTCAGCGGAAAATATCCAGAGGATGATGCAAGGACCATCATGATACAAATATTAACTGTTGTGGCGTTTTGCCACCTCCAGTGTGCGGTGGATAGGGATCTCAAATCTGAGCATTTTCTGTTTACATCGAGGGATTCACAGATGAAGGCTATAGACTTCGGCTTGTCAGATTTTGTCAAACCAGTTCTCCATAGGTCTTACAATACAGAGGCTGATGTGTGGAGTATTGGGGTGATTGCATATTCTTTTGAGTGGCAGCCTTCAAAGTGTCACCCACTGCTTTCTATTGCAGGTCATCTATGGCTTAAAAAGTATAACATTGTTAAAATTCCCATGGATATTCTAATATTTAAACTCATGAAGGCTTATATGCATTCGTCACCTCTCCGGAAAACTGCTTTAGGGGCTCTTTCTAAAACATTGATGCCAGATGACCTTTGTTATATGGAGGAGCAGTTTGCACAACTGGAACCAGATGACAGGAACACAATAGGTTTAGAAAATATCAGAACGGCCTTGATGAAAAATGCAACTAATGCAATGAAAGAAGGACGGTATGCTGATATTCTAGCATCACTAAATGCATTGCACTACAGAAGGATGGAGTTTCAGGAATTTTGTGCAGCCACAGTATGTGTGCAGCAAGTTGAGGCTCTTGATCAATGGGAGCAACAATATCATTATGCCTACAAACTTTTTGATAAGGATGGCAACAAGGTTGTTGTCATTGAGGAGCTGGCTTCGGAGCTTCACATCGGCCATTCTGTCCCTGCTCATGCTGTTCGTGATTGGATTAGGCAAACTGATGGGAAGCTTAGTTTTGTTGAGTTTGTCAAGTTGTTGCGTGGGGTTTCTAGCCGTACCTTTGCCAAAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

426

Amino Acids

48.66

Weight (kDa)

6.93

Isoelectric Point (pI)

43.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	48 - 214	1.6e-20	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	50 - 191	5e-06	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	677
AccB7I	CCANNNNNTGG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	783
AciI	CCGC	2 cut(s)	402, 482
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	1153
AcsI	RAATTY	4 cut(s)	127, 322, 723, 1010
AfaI	GTAC	2 cut(s)	64, 1258
AfiI	CCNNNNNNNGG	2 cut(s)	114, 481
AgsI	TTSAA	3 cut(s)	53, 292, 660
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	9 cut(s)	100, 111, 148, 194, 374, 1132, 1144, 1210, 1271
AluI	AGCT	9 cut(s)	100, 111, 148, 194, 374, 1132, 1144, 1210, 1271
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	501
AlwNI	CAGNNNCTG	1 cut(s)	608
Aor13HI	TCCGGA	1 cut(s)	783
AoxI	GGCC	3 cut(s)	220, 909, 1153
ApeKI	GCWGC	4 cut(s)	230, 652, 1019, 1036
ApoI	RAATTY	4 cut(s)	127, 322, 723, 1010
AspS9I	GGNCC	2 cut(s)	220, 429
AsuHPI	GGTGA	5 cut(s)	25, 31, 640, 659, 768
AvaII	GGWCC	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	376, 805
BbsI	GAAGAC	2 cut(s)	60, 348
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	4 cut(s)	217, 664, 1031, 1048
BccI	CCATC	4 cut(s)	440, 991, 1097, 1196
BceAI	ACGGC	2 cut(s)	924, 1239
BciVI	GTATCC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	1054
BcoDI	GTCTC	1 cut(s)	147
BfaI	CTAG	3 cut(s)	101, 965, 1251
BfmI	CTRYAG	3 cut(s)	378, 546, 988
BfuAI	ACCTGC	1 cut(s)	677
BfuI	GTATCC	1 cut(s)	381
BisI	GCNGC	4 cut(s)	231, 653, 1020, 1037
BlsI	GCNGC	4 cut(s)	232, 654, 1021, 1038
Bme18I	GGWCC	1 cut(s)	429
BmgT120I	GGNCC	2 cut(s)	220, 429
BmiI	GGNNCC	1 cut(s)	867
BmsI	GCATC	4 cut(s)	322, 412, 810, 977
BpiI	GAAGAC	2 cut(s)	60, 348
BplI	GAGNNNNNCTC	2 cut(s)	358, 390
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	200
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	729
BsaWI	WCCGGW	1 cut(s)	783
BsaXI	ACNNNNNCTCC	6 cut(s)	144, 174, 567, 597, 836, 866
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 481
Bse1I	ACTGG	5 cut(s)	70, 307, 475, 578, 867
Bse3DI	GCAATG	2 cut(s)	942, 980
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	783
BseDI	CCNNGG	1 cut(s)	729
BseGI	GGATG	3 cut(s)	424, 1002, 1108
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	114, 481
BseMI	GCAATG	2 cut(s)	942, 980
BseMII	CTCAG	1 cut(s)	495
BseNI	ACTGG	5 cut(s)	70, 307, 475, 578, 867
BseRI	GAGGAG	2 cut(s)	860, 1142
BseXI	GCAGC	4 cut(s)	217, 664, 1031, 1048
BsgI	GTGCAG	3 cut(s)	382, 1038, 1055
BshFI	GGCC	3 cut(s)	222, 911, 1155
BsiHKAI	GWGCWC	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	784
BslFI	GGGAC	1 cut(s)	1148
BslI	CCNNNNNNNGG	2 cut(s)	114, 481
BsmAI	GTCTC	1 cut(s)	147
BsmBI	CGTCTC	1 cut(s)	147
BsmFI	GGGAC	1 cut(s)	1148
BsmI	GAATGC	2 cut(s)	395, 769
BsnI	GGCC	3 cut(s)	222, 911, 1155
Bsp1286I	GDGCHC	2 cut(s)	376, 805
Bsp13I	TCCGGA	1 cut(s)	783
Bsp143I	GATC	2 cut(s)	493, 1054
Bsp19I	CCATGG	1 cut(s)	729
BspACI	CCGC	2 cut(s)	402, 482
BspANI	GGCC	3 cut(s)	222, 911, 1155
BspCNI	CTCAG	1 cut(s)	496
BspEI	TCCGGA	1 cut(s)	783
BspHI	TCATGA	2 cut(s)	435, 753
BspLI	GGNNCC	1 cut(s)	867
BspMI	ACCTGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	501
BsrDI	GCAATG	2 cut(s)	942, 980
BsrI	ACTGG	5 cut(s)	70, 307, 475, 578, 867
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	2 cut(s)	493, 1054
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	4 cut(s)	40, 454, 951, 1027
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	932
BstC8I	GCNNGC	1 cut(s)	1134
BstDEI	CTNAG	3 cut(s)	195, 504, 1211
BstDSI	CCRYGG	1 cut(s)	729
BstF5I	GGATG	3 cut(s)	424, 1002, 1108
BstKTI	GATC	2 cut(s)	496, 1057
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	493, 1054
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 932
BstNSI	RCATGY	1 cut(s)	230
BstSFI	CTRYAG	3 cut(s)	378, 546, 988
BstV1I	GCAGC	4 cut(s)	217, 664, 1031, 1048
BstV2I	GAAGAC	2 cut(s)	60, 348
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	3 cut(s)	222, 911, 1155
BtgI	CCRYGG	1 cut(s)	729
BtsCI	GGATG	3 cut(s)	424, 1002, 1108
BtsI	GCAGTG	1 cut(s)	671
BtsIMutI	CAGTG	3 cut(s)	45, 482, 671
BveI	ACCTGC	1 cut(s)	677
Cac8I	GCNNGC	1 cut(s)	1134
CaiI	CAGNNNCTG	1 cut(s)	608
CciI	TCATGA	2 cut(s)	435, 753
Cfr13I	GGNCC	2 cut(s)	220, 429
Csp6I	GTAC	2 cut(s)	63, 1257
CviAII	CATG	5 cut(s)	227, 436, 730, 754, 1172
CviQI	GTAC	2 cut(s)	63, 1257
DdeI	CTNAG	3 cut(s)	195, 504, 1211
DpnI	GATC	2 cut(s)	495, 1056
DpnII	GATC	2 cut(s)	493, 1054
DraI	TTTAAA	1 cut(s)	748
EaeI	YGGCCR	1 cut(s)	1153
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
Ecl136II	GAGCTC	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	729
Eco24I	GRGCYC	2 cut(s)	376, 805
Eco47I	GGWCC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	374
EcoT14I	CCWWGG	1 cut(s)	729
EcoT22I	ATGCAT	3 cut(s)	337, 771, 982
EcoT38I	GRGCYC	2 cut(s)	376, 805
ErhI	CCWWGG	1 cut(s)	729
Esp3I	CGTCTC	1 cut(s)	147
FaeI	CATG	5 cut(s)	230, 439, 733, 757, 1175
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FaqI	GGGAC	1 cut(s)	1148
FatI	CATG	5 cut(s)	226, 435, 729, 753, 1171
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	1 cut(s)	1054
Fnu4HI	GCNGC	4 cut(s)	231, 653, 1020, 1037
FokI	GGATG	3 cut(s)	431, 1009, 1115
FriOI	GRGCYC	2 cut(s)	376, 805
Fsp4HI	GCNGC	4 cut(s)	231, 653, 1020, 1037
FspBI	CTAG	3 cut(s)	101, 965, 1251
GluI	GCNGC	4 cut(s)	231, 653, 1020, 1037
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	3 cut(s)	222, 911, 1155
HapII	CCGG	1 cut(s)	784
Hin1II	CATG	5 cut(s)	230, 439, 733, 757, 1175
HindIII	AAGCTT	1 cut(s)	1208
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	1 cut(s)	784
HphI	GGTGA	5 cut(s)	25, 31, 640, 659, 768
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	4 cut(s)	505, 565, 905, 1141
Hpy188III	TCNNGA	8 cut(s)	238, 413, 436, 754, 784, 1007, 1052, 1181
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	9 cut(s)	16, 40, 162, 267, 535, 666, 751, 938, 987
HpyCH4III	ACNGT	4 cut(s)	40, 454, 951, 1027
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 932
HpyF3I	CTNAG	3 cut(s)	195, 504, 1211
Hsp92II	CATG	5 cut(s)	230, 439, 733, 757, 1175
Kpn2I	TCCGGA	1 cut(s)	783
Ksp22I	TGATCA	1 cut(s)	1054
Kzo9I	GATC	2 cut(s)	493, 1054
LmnI	GCTCC	6 cut(s)	371, 379, 847, 1063, 1129, 1141
Lsp1109I	GCAGC	4 cut(s)	217, 664, 1031, 1048
LweI	GCATC	4 cut(s)	322, 412, 810, 977
MaeI	CTAG	3 cut(s)	101, 965, 1251
MaeIII	GTNAC	3 cut(s)	91, 665, 774
MalI	GATC	2 cut(s)	495, 1056
MboI	GATC	2 cut(s)	493, 1054
MboII	GAAGA	3 cut(s)	65, 86, 353
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	376, 805
MluCI	AATT	5 cut(s)	48, 127, 322, 723, 1010
Mph1103I	ATGCAT	3 cut(s)	337, 771, 982
MroI	TCCGGA	1 cut(s)	783
MseI	TTAA	5 cut(s)	201, 449, 702, 720, 747
MslI	CAYNNNNRTG	1 cut(s)	38
MspA1I	CMGCKG	1 cut(s)	402
MspI	CCGG	1 cut(s)	784
Mva1269I	GAATGC	2 cut(s)	395, 769
MwoI	GCNNNNNNNGC	2 cut(s)	800, 932
NcoI	CCATGG	1 cut(s)	729
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	2 cut(s)	493, 1054
NlaIII	CATG	5 cut(s)	230, 439, 733, 757, 1175
NlaIV	GGNNCC	1 cut(s)	867
NmuCI	GTSAC	2 cut(s)	665, 774
NsiI	ATGCAT	3 cut(s)	337, 771, 982
NspI	RCATGY	1 cut(s)	230
OliI	CACNNNNGTG	1 cut(s)	38
PagI	TCATGA	2 cut(s)	435, 753
PctI	GAATGC	2 cut(s)	395, 769
PfeI	GAWTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	232, 654, 1021, 1038
Psp124BI	GAGCTC	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	867
PspPI	GGNCC	2 cut(s)	220, 429
PstNI	CAGNNNCTG	1 cut(s)	608
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	2 cut(s)	64, 1258
RsaNI	GTAC	2 cut(s)	63, 1257
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	376
SaqAI	TTAA	5 cut(s)	201, 449, 702, 720, 747
SatI	GCNGC	4 cut(s)	231, 653, 1020, 1037
Sau3AI	GATC	2 cut(s)	493, 1054
Sau96I	GGNCC	2 cut(s)	220, 429
SduI	GDGCHC	2 cut(s)	376, 805
SfaNI	GCATC	4 cut(s)	322, 412, 810, 977
SfcI	CTRYAG	3 cut(s)	378, 546, 988
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	5 cut(s)	48, 127, 322, 723, 1010
SsiI	CCGC	2 cut(s)	402, 482
SspI	AATATT	2 cut(s)	447, 744
SspMI	CTAG	3 cut(s)	101, 965, 1251
SstI	GAGCTC	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	4 cut(s)	40, 454, 951, 1027
TaqI	TCGA	1 cut(s)	524
TasI	AATT	5 cut(s)	48, 127, 322, 723, 1010
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	5 cut(s)	201, 449, 702, 720, 747
Tru9I	TTAA	5 cut(s)	201, 449, 702, 720, 747
TscAI	CASTG	3 cut(s)	45, 482, 678
TseFI	GTSAC	2 cut(s)	665, 774
TseI	GCWGC	4 cut(s)	230, 652, 1019, 1036
Tsp45I	GTSAC	2 cut(s)	665, 774
TspDTI	ATGAA	5 cut(s)	354, 554, 770, 932, 953
TspRI	CASTG	3 cut(s)	45, 482, 678
Van91I	CCANNNNNTGG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	429
XapI	RAATTY	4 cut(s)	127, 322, 723, 1010
XceI	RCATGY	1 cut(s)	230
XspI	CTAG	3 cut(s)	101, 965, 1251
Zsp2I	ATGCAT	3 cut(s)	337, 771, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.