Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

10659863 .. 10663127

Gene Structure 3265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0124100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAACCGGAGCCCCAACCACGGCCAAACCCTCGTCTCTCCGATGGAAAATTCTCCGTCAAGCCCTTCTTCGCAAACCAACCGATGAGCAATCTGCAATTGGGGTCAAGCGAATCACGAGGAAGACGACTCAAGGCTTCAACTTGATACCCTCTAATCTCGTTGAAGACCACCCAACTAACTCAACCGACGCAACTGTCTGCTACACCATCCCCATTGACTCTGCTCCCAAGCTTTACCTAACTCAACGAGTGATTGACCGTCCTGAGCTCAGTGACTTTGAGATTTGCAATCAGTACAATATTGACAATACTGGGCTTGTTTGTCAGTGGCCATCAGAAGAGGCTCTTGCGTATTTTTGCTTGCAGAATGCAGACATGTTCAGGTCTAAGAGTGTGATTGAGCTTGGGGCAGGATATGGATTAGCTGGTCTAGTTATTGCAGCAGTTACAGAGGCATCGGAAGTTGTCATTTCTGACGGAAATCCCCAAGTAGTTGATTATATTCAGCGCAATATTGATGCCAACTCAAAAGCATTTGGTGGTACAAGAGTGAAGTCTATGATGTTGCATTGGAATCAGAATGAAAAATCAAATATCTCTAGCACTTTTGATCTCATTGTTGCGAGTGACTGCACCTTTTTTAAGGAATTCCACAATGGACTTGCTCAAATTGTCAAATTCTTGTTGGAAAAAGTGCGGCCCGCTGAAGCTATATTCTTCAGTCCTAAAAGAGGAGACTCCTTAGACAAGTTCCTAGAGAAAATCAAAGAAAGTAATTTGTGCTTCAGCATAACAGAAAATTATGATACAGAAATTTGGAAGCGCCATAACCAGCTTATGAATGGTGATGGTTCCTGGCCCAGCTACGAAAAAGATCACTGCTATCCCTTATTGGTCAGGATTGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

304

Amino Acids

34.23

Weight (kDa)

5.81

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	111 - 258	4.7e-22	Lysine methyltransferase
MTS	PF05175	123 - 208	6.9e-06	Methyltransferase small domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	197
AciI	CCGC	2 cut(s)	700, 705
AcoI	YGGCCR	2 cut(s)	24, 332
AcsI	RAATTY	4 cut(s)	51, 650, 680, 816
AcuI	CTGAAG	3 cut(s)	706, 729, 772
AfaI	GTAC	2 cut(s)	299, 547
AfiI	CCNNNNNNNGG	2 cut(s)	22, 734
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	2 cut(s)	142, 167
AjnI	CCWGG	1 cut(s)	857
AluBI	AGCT	7 cut(s)	235, 271, 406, 428, 713, 838, 867
AluI	AGCT	7 cut(s)	235, 271, 406, 428, 713, 838, 867
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	42, 732
AoxI	GGCC	4 cut(s)	24, 332, 701, 860
ApeKI	GCWGC	1 cut(s)	443
ApoI	RAATTY	4 cut(s)	51, 650, 680, 816
AspLEI	GCGC	2 cut(s)	513, 828
AspS9I	GGNCC	2 cut(s)	702, 861
AsuHPI	GGTGA	1 cut(s)	860
BaeI	ACNNNNGTAYC	2 cut(s)	537, 570
BalI	TGGCCA	1 cut(s)	334
BanII	GRGCYC	2 cut(s)	16, 273
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	2 cut(s)	131, 174
Bbv12I	GWGCWC	1 cut(s)	273
BbvI	GCAGC	1 cut(s)	455
BccI	CCATC	4 cut(s)	39, 218, 343, 845
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	859
BcoDI	GTCTC	2 cut(s)	42, 732
BfaI	CTAG	3 cut(s)	434, 603, 758
BfoI	RGCGCY	1 cut(s)	829
BisI	GCNGC	2 cut(s)	444, 701
BlsI	GCNGC	2 cut(s)	445, 702
Bme1390I	CCNGG	1 cut(s)	859
BmgT120I	GGNCC	2 cut(s)	702, 861
BmiI	GGNNCC	2 cut(s)	13, 856
BmrFI	CCNGG	1 cut(s)	859
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	467, 511
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	2 cut(s)	131, 174
Bpu10I	CCTNAGC	1 cut(s)	267
BpuEI	CTTGAG	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 734
Bse1I	ACTGG	1 cut(s)	319
BseBI	CCWGG	1 cut(s)	859
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	2 cut(s)	22, 734
BseMII	CTCAG	2 cut(s)	258, 286
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	1 cut(s)	455
BseYI	CCCAGC	1 cut(s)	863
BsgI	GTGCAG	1 cut(s)	619
BshFI	GGCC	4 cut(s)	26, 334, 703, 862
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	2 cut(s)	22, 734
BsmAI	GTCTC	2 cut(s)	42, 732
BsmBI	CGTCTC	1 cut(s)	42
BsmI	GAATGC	1 cut(s)	376
BsnI	GGCC	4 cut(s)	26, 334, 703, 862
Bsp1286I	GDGCHC	2 cut(s)	16, 273
Bsp143I	GATC	2 cut(s)	613, 877
BspACI	CCGC	2 cut(s)	700, 705
BspANI	GGCC	4 cut(s)	26, 334, 703, 862
BspCNI	CTCAG	2 cut(s)	259, 285
BspLI	GGNNCC	2 cut(s)	13, 856
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	2 cut(s)	613, 877
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	859
Bst4CI	ACNGT	2 cut(s)	199, 263
Bst6I	CTCTTC	1 cut(s)	336
BstC8I	GCNNGC	2 cut(s)	365, 705
BstDEI	CTNAG	4 cut(s)	267, 272, 390, 745
BstDSI	CCRYGG	1 cut(s)	21
BstENI	CCTNNNNNAGG	1 cut(s)	732
BstF5I	GGATG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	829
BstHHI	GCGC	2 cut(s)	513, 828
BstKTI	GATC	2 cut(s)	616, 880
BstMAI	GTCTC	2 cut(s)	42, 732
BstMBI	GATC	2 cut(s)	613, 877
BstNI	CCWGG	1 cut(s)	859
BstNSI	RCATGY	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	857
BstV1I	GCAGC	1 cut(s)	455
BstV2I	GAAGAC	2 cut(s)	131, 174
BsuRI	GGCC	4 cut(s)	26, 334, 703, 862
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	3 cut(s)	280, 335, 880
Cac8I	GCNNGC	2 cut(s)	365, 705
CfoI	GCGC	2 cut(s)	513, 828
Cfr13I	GGNCC	2 cut(s)	702, 861
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	2 cut(s)	298, 546
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	2 cut(s)	298, 546
DdeI	CTNAG	4 cut(s)	267, 272, 390, 745
DpnI	GATC	2 cut(s)	615, 879
DpnII	GATC	2 cut(s)	613, 877
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	2 cut(s)	24, 332
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	16, 273
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	3 cut(s)	706, 729, 772
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	732
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	857
EcoT38I	GRGCYC	2 cut(s)	16, 273
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	1 cut(s)	382
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 333, 365
FatI	CATG	1 cut(s)	378
FauI	CCCGC	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	444, 701
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	2 cut(s)	16, 273
Fsp4HI	GCNGC	2 cut(s)	444, 701
FspBI	CTAG	3 cut(s)	434, 603, 758
GlaI	GCGC	2 cut(s)	512, 827
GluI	GCNGC	2 cut(s)	444, 701
GsaI	CCCAGC	1 cut(s)	867
HaeII	RGCGCY	1 cut(s)	829
HaeIII	GGCC	4 cut(s)	26, 334, 703, 862
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	513, 828
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	2 cut(s)	511, 826
HinP1I	GCGC	2 cut(s)	511, 826
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	5 cut(s)	114, 130, 221, 577, 740
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	1 cut(s)	860
Hpy188I	TCNGA	5 cut(s)	44, 340, 463, 478, 582
Hpy188III	TCNNGA	3 cut(s)	118, 266, 901
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	199, 263
HpyCH4V	TGCA	8 cut(s)	98, 291, 367, 374, 443, 571, 636, 908
HpyF3I	CTNAG	4 cut(s)	267, 272, 390, 745
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	2 cut(s)	511, 826
Kzo9I	GATC	2 cut(s)	613, 877
LmnI	GCTCC	2 cut(s)	11, 232
Lsp1109I	GCAGC	1 cut(s)	455
LweI	GCATC	2 cut(s)	467, 511
MaeI	CTAG	3 cut(s)	434, 603, 758
MaeIII	GTNAC	3 cut(s)	275, 448, 629
MalI	GATC	2 cut(s)	615, 879
MboI	GATC	2 cut(s)	613, 877
MboII	GAAGA	5 cut(s)	62, 136, 179, 353, 712
MfeI	CAATTG	1 cut(s)	99
MhlI	GDGCHC	2 cut(s)	16, 273
MlsI	TGGCCA	1 cut(s)	334
MluCI	AATT	8 cut(s)	51, 99, 650, 672, 680, 778, 802, 816
MluNI	TGGCCA	1 cut(s)	334
MlyI	GAGTC	3 cut(s)	124, 215, 734
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	6 cut(s)	43, 114, 163, 337, 448, 728
Mox20I	TGGCCA	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	334
MseI	TTAA	1 cut(s)	645
Msp20I	TGGCCA	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	707
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	859
MunI	CAATTG	1 cut(s)	99
Mva1269I	GAATGC	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	859
NdeII	GATC	2 cut(s)	613, 877
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	13, 856
NmuCI	GTSAC	2 cut(s)	275, 629
NspI	RCATGY	1 cut(s)	382
PciI	ACATGT	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PctI	GAATGC	1 cut(s)	376
PfeI	GAWTC	2 cut(s)	114, 577
PkrI	GCNGC	2 cut(s)	445, 702
PleI	GAGTC	3 cut(s)	124, 215, 734
PpsI	GAGTC	3 cut(s)	124, 215, 734
PscI	ACATGT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	857
PspFI	CCCAGC	1 cut(s)	863
PspGI	CCWGG	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	13, 856
PspPI	GGNCC	2 cut(s)	702, 861
RsaI	GTAC	2 cut(s)	299, 547
RsaNI	GTAC	2 cut(s)	298, 546
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	645
SatI	GCNGC	2 cut(s)	444, 701
Sau3AI	GATC	2 cut(s)	613, 877
Sau96I	GGNCC	2 cut(s)	702, 861
SchI	GAGTC	3 cut(s)	124, 215, 734
ScrFI	CCNGG	1 cut(s)	859
SduI	GDGCHC	2 cut(s)	16, 273
SfaNI	GCATC	2 cut(s)	467, 511
SmlI	CTYRAG	1 cut(s)	132
SmoI	CTYRAG	1 cut(s)	132
Sse9I	AATT	8 cut(s)	51, 99, 650, 672, 680, 778, 802, 816
SsiI	CCGC	2 cut(s)	700, 705
SspI	AATATT	2 cut(s)	304, 517
SspMI	CTAG	3 cut(s)	434, 603, 758
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	857
TaaI	ACNGT	2 cut(s)	199, 263
TasI	AATT	8 cut(s)	51, 99, 650, 672, 680, 778, 802, 816
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	703
TfiI	GAWTC	2 cut(s)	114, 577
Tru1I	TTAA	1 cut(s)	645
Tru9I	TTAA	1 cut(s)	645
TscAI	CASTG	3 cut(s)	280, 335, 887
TseFI	GTSAC	2 cut(s)	275, 629
TseI	GCWGC	1 cut(s)	443
Tsp45I	GTSAC	2 cut(s)	275, 629
TspDTI	ATGAA	2 cut(s)	600, 857
TspGWI	ACGGA	2 cut(s)	47, 495
TspRI	CASTG	3 cut(s)	280, 335, 887
XagI	CCTNNNNNAGG	1 cut(s)	732
XapI	RAATTY	4 cut(s)	51, 650, 680, 816
XceI	RCATGY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XspI	CTAG	3 cut(s)	434, 603, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.