Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Reverse (-)

76790544 .. 76794701

Gene Structure 4158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1779 bp

ATGGGTCTCTGCACCTCCAAACCCTCGTTCCCCAACTCCATCACTTCGTCTCCGCAGTCCGATTCTCAGGTCGGGAAAGATCCGGTGAAGGTCAATTCGAGCACCGGCGATGTCGAAAGCCCTAGAAATGAGCAGAACGGGGAGAAGCTCGAGGAGGAGACTGTGATCGCCGTCAAGAAGTCGCCGTTTTTTCCGTTCTACAGTCCGAGTCCGGCGCACTACTTCTTCTCCTCGAAGAAGTCTCCGGCGAATGCCAGCGCGAAGTCGACGCCGAGCCGGTTCTTCAAGCGGCCGTTCCCGCCGCCGTCGCCGGCAAAGCACATAAGGGCGCTGCTGGCGCGGCGGCACGGGACGGTGAAGCCGAACGAGGCGATTCCGGAGGGGAGTGAGGTTGAGGGAGGTGTGACTGGGCTTGATAAGAGCTTTGGGTTCTCTAAGCATTTGAGTAACAAGTATGAGCTCGGTGAAGAGGTTGGCCGAGGGCATTTTGGGTATACTTGCAAAGCTACCTTCAAGAAGGGAGAGCTCAAGGGCCAGCAGGTTGCAGTCAAAGTCATTCCCAAAGTCAAGATGACTACTGCAATTGCCATTGAGGATGTGAGAAGGGAAGTCAAGATATTGAAAGCTTTGACCGGGCATAGCAATCTAGTACAGTTTTATGATGCATACGAAGACCATGATAATGTCTACATAGTTATGGAGGGTGGGAAATATACAGAGGAAGATGCAAGGACTGTGATGATACAAATATTAAATGTTGTCGCGTTTTGCCACCTCCAGGGCGTGGTCCATCGAGATCTTAAGCCAGAGAATTTTCTGTTTACATCGAAGGATGAAGATTCACAGTTGAAGGCTATAGACTTTGGCCTTTCAGATTTTGTGAAACCAGATGAAAGGCTTAACGACATTGTTGGTAGTGCATACTATGTAGCCCCCGAAGTGTTACATAGGGCTTATGGTACAGAGGCTGATGTCTGGAGCGTAGGTGTGATTGCATACATTCTATTGTGTGGCAGCCGTCCATTTTGGGCTCGAACTGAGTCTGGCATTTTTCGGGCAGTTCTAAAAGCTGATCCAAGTTTTGATGAAACACCTTGGCCAACTCTCTCTACAGAGGCAAAAGATTTTGTCAAGCGCCTATTGAATAAAGACCCACGGAAAAGAATGACAGCTGCACAAGCGTTAAGTCATCCCTGGCTTAAAAATTATAGCACTGTTAAAATTCCTCTGGACATATTAATATTCAAGCTCATGAAGGTTTATATGCGCTCATCACCTCTCCGCAAAACTGCTTTAAGGGCTCTTTCCAAGACATTGACTGTTGATGAGCTTTGCTATTTGAAGGAGCAGTTTGCGCTTTTAGAACCAAACAAAAATGGCACAATAAGCTTAGAAAACATCAAAACGGCCTTGATGAAAAATGCAACTGATGCAATGAAGGAGGCACGAATTGCTGATTTTCTAGCCTCGCTTAACGCATTGCAATACAGAAGGATGGATTTTGAGGAATTTTGTACAGCTACGCTAAGTGTCCACCAACTTGAGGCTCTGGACCGTTGGGAGCAACATGCTCGTTGTGCATATGAACTTTTTGATAAGGAAGGCAACAGGGCTATTGTCATTGAGGAACTGGCTTCGGAACTTGGTCTTGGCCCTTCTGTCCCTGTTCATGCGGTTCTTCATGATTGGATTAGGCACACCGACGGGAAGCTGAGTTTCCTTGGATTTGTGAAATTGTTGCATGGCGTATCTAGCCGGGTTGTTGCAAAAGCTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

592

Amino Acids

66.19

Weight (kDa)

8.75

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	152 - 400	1.3e-64	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	153 - 393	6.6e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	529
AccB7I	CCANNNNNTGG	1 cut(s)	784
AccI	GTMKAC	3 cut(s)	266, 494, 687
AccII	CGCG	3 cut(s)	260, 340, 764
AccIII	TCCGGA	1 cut(s)	376
AciI	CCGC	8 cut(s)	53, 289, 299, 302, 340, 343, 1282, 1673
AclWI	GGATC	2 cut(s)	74, 1067
AcoI	YGGCCR	3 cut(s)	290, 475, 1097
AcsI	RAATTY	3 cut(s)	811, 1221, 1508
AcyI	GRCGYC	1 cut(s)	269
AfaI	GTAC	3 cut(s)	651, 961, 1516
AfiI	CCNNNNNNNGG	3 cut(s)	778, 784, 1543
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	7 cut(s)	286, 514, 622, 850, 1144, 1246, 1342
AjnI	CCWGG	2 cut(s)	777, 1193
AjuI	GAANNNNNNNTTGG	4 cut(s)	11, 43, 1632, 1664
Alw21I	GWGCWC	3 cut(s)	104, 462, 528
Alw26I	GTCTC	4 cut(s)	11, 54, 152, 246
AlwI	GGATC	2 cut(s)	74, 1067
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	376
AoxI	GGCC	7 cut(s)	290, 475, 532, 865, 1097, 1407, 1651
ApeKI	GCWGC	3 cut(s)	331, 1014, 1172
ApoI	RAATTY	3 cut(s)	811, 1221, 1508
AseI	ATTAAT	1 cut(s)	1238
AspLEI	GCGC	7 cut(s)	217, 260, 331, 340, 1137, 1269, 1357
AspS9I	GGNCC	4 cut(s)	532, 787, 1552, 1652
AsuC2I	CCSGG	2 cut(s)	634, 1757
AsuHPI	GGTGA	4 cut(s)	97, 367, 476, 1266
AvaI	CYCGRG	1 cut(s)	149
AvaII	GGWCC	2 cut(s)	787, 1552
BalI	TGGCCA	1 cut(s)	1099
BanII	GRGCYC	4 cut(s)	462, 528, 1033, 1303
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	3 cut(s)	104, 462, 528
BbvI	GCAGC	3 cut(s)	318, 1026, 1159
BccI	CCATC	3 cut(s)	47, 798, 1489
BceAI	ACGGC	6 cut(s)	155, 169, 277, 289, 1002, 1422
BcgI	CGANNNNNNTGC	2 cut(s)	1553, 1587
BciT130I	CCWGG	2 cut(s)	779, 1195
BcnI	CCSGG	2 cut(s)	634, 1757
BcoDI	GTCTC	4 cut(s)	11, 54, 152, 246
BfaI	CTAG	4 cut(s)	123, 647, 1463, 1752
BfmI	CTRYAG	3 cut(s)	199, 855, 1110
BfoI	RGCGCY	2 cut(s)	332, 1138
BfrI	CTTAAG	1 cut(s)	800
BfuAI	ACCTGC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	7 cut(s)	290, 302, 332, 341, 344, 1015, 1173
BlsI	GCNGC	7 cut(s)	291, 303, 333, 342, 345, 1016, 1174
Bme1390I	CCNGG	4 cut(s)	634, 779, 1195, 1757
Bme18I	GGWCC	2 cut(s)	787, 1552
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	4 cut(s)	532, 787, 1552, 1652
BmrFI	CCNGG	4 cut(s)	634, 779, 1195, 1757
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	3 cut(s)	652, 715, 1420
BmuI	ACTGGG	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	2 cut(s)	761, 997
BpuEI	CTTGAG	2 cut(s)	512, 1562
BpuMI	CCSGG	2 cut(s)	634, 1757
BsaHI	GRCGYC	1 cut(s)	269
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	6 cut(s)	478, 778, 1094, 1154, 1193, 1720
BsaWI	WCCGGW	2 cut(s)	82, 376
BsaXI	ACNNNNNCTCC	6 cut(s)	34, 64, 212, 242, 970, 1000
Bsc4I	CCNNNNNNNGG	3 cut(s)	778, 784, 1543
Bse118I	RCCGGY	3 cut(s)	104, 276, 310
Bse1I	ACTGG	2 cut(s)	412, 1635
Bse3DI	GCAATG	2 cut(s)	1440, 1478
BseAI	TCCGGA	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	779, 1195
BseDI	CCNNGG	6 cut(s)	478, 778, 1094, 1154, 1193, 1720
BseGI	GGATG	4 cut(s)	601, 838, 1189, 1500
BseLI	CCNNNNNNNGG	3 cut(s)	778, 784, 1543
BseMI	GCAATG	2 cut(s)	1440, 1478
BseMII	CTCAG	3 cut(s)	80, 1029, 1703
BseNI	ACTGG	2 cut(s)	412, 1635
BseRI	GAGGAG	3 cut(s)	167, 170, 220
BseX3I	CGGCCG	1 cut(s)	290
BseXI	GCAGC	3 cut(s)	318, 1026, 1159
BsgI	GTGCAG	1 cut(s)	1158
Bsh1236I	CGCG	3 cut(s)	260, 340, 764
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	7 cut(s)	292, 477, 534, 867, 1099, 1409, 1653
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	3 cut(s)	104, 462, 528
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	9 cut(s)	83, 105, 212, 245, 277, 311, 377, 633, 1756
BslFI	GGGAC	2 cut(s)	364, 1646
BslI	CCNNNNNNNGG	3 cut(s)	778, 784, 1543
BsmAI	GTCTC	4 cut(s)	11, 54, 152, 246
BsmBI	CGTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	364, 1646
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	7 cut(s)	292, 477, 534, 867, 1099, 1409, 1653
Bso31I	GGTCTC	1 cut(s)	11
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	5 cut(s)	104, 462, 528, 1033, 1303
Bsp13I	TCCGGA	1 cut(s)	376
Bsp1407I	TGTACA	1 cut(s)	1514
Bsp143I	GATC	4 cut(s)	79, 165, 796, 1072
BspACI	CCGC	8 cut(s)	53, 289, 299, 302, 340, 343, 1282, 1673
BspANI	GGCC	7 cut(s)	292, 477, 534, 867, 1099, 1409, 1653
BspCNI	CTCAG	3 cut(s)	79, 1030, 1704
BspEI	TCCGGA	1 cut(s)	376
BspFNI	CGCG	3 cut(s)	260, 340, 764
BspHI	TCATGA	2 cut(s)	1251, 1681
BspMI	ACCTGC	1 cut(s)	529
BspPI	GGATC	2 cut(s)	74, 1067
BspTI	CTTAAG	1 cut(s)	800
BspTNI	GGTCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	1440, 1478
BsrFI	RCCGGY	3 cut(s)	104, 276, 310
BsrGI	TGTACA	1 cut(s)	1514
BsrI	ACTGG	2 cut(s)	412, 1635
BssAI	RCCGGY	3 cut(s)	104, 276, 310
BssECI	CCNNGG	6 cut(s)	478, 778, 1094, 1154, 1193, 1720
BssMI	GATC	4 cut(s)	79, 165, 796, 1072
BssNAI	GTATAC	1 cut(s)	495
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	1094, 1720
Bst1107I	GTATAC	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	779, 1195
Bst4CI	ACNGT	9 cut(s)	163, 203, 355, 654, 736, 846, 1216, 1321, 1556
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	1 cut(s)	269
BstAFI	CTTAAG	1 cut(s)	800
BstAPI	GCANNNNNTGC	2 cut(s)	1430, 1451
BstAUI	TGTACA	1 cut(s)	1514
BstC8I	GCNNGC	4 cut(s)	256, 312, 336, 536
BstDEI	CTNAG	6 cut(s)	66, 435, 1038, 1390, 1526, 1712
BstDSI	CCRYGG	1 cut(s)	1154
BstF5I	GGATG	4 cut(s)	601, 838, 1189, 1500
BstFNI	CGCG	3 cut(s)	260, 340, 764
BstH2I	RGCGCY	2 cut(s)	332, 1138
BstHHI	GCGC	7 cut(s)	217, 260, 331, 340, 1137, 1269, 1357
BstKTI	GATC	4 cut(s)	82, 168, 799, 1075
BstMAI	GTCTC	4 cut(s)	11, 54, 152, 246
BstMBI	GATC	4 cut(s)	79, 165, 796, 1072
BstMCI	CGRYCG	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	779, 1195
BstNSI	RCATGY	1 cut(s)	1571
BstSCI	CCNGG	4 cut(s)	632, 777, 1193, 1755
BstSFI	CTRYAG	3 cut(s)	199, 855, 1110
BstUI	CGCG	3 cut(s)	260, 340, 764
BstV1I	GCAGC	3 cut(s)	318, 1026, 1159
BstV2I	GAAGAC	1 cut(s)	678
BstX2I	RGATCY	2 cut(s)	79, 796
BstYI	RGATCY	2 cut(s)	79, 796
BstZ17I	GTATAC	1 cut(s)	495
BstZI	CGGCCG	1 cut(s)	290
BsuRI	GGCC	7 cut(s)	292, 477, 534, 867, 1099, 1409, 1653
BtgI	CCRYGG	1 cut(s)	1154
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	601, 838, 1189, 1500
BtsIMutI	CAGTG	1 cut(s)	1212
BveI	ACCTGC	1 cut(s)	529
Cac8I	GCNNGC	4 cut(s)	256, 312, 336, 536
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	2 cut(s)	1251, 1681
CfoI	GCGC	7 cut(s)	217, 260, 331, 340, 1137, 1269, 1357
Cfr10I	RCCGGY	3 cut(s)	104, 276, 310
Cfr13I	GGNCC	4 cut(s)	532, 787, 1552, 1652
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	650, 960, 1515
CviAII	CATG	6 cut(s)	677, 1252, 1568, 1670, 1682, 1742
CviQI	GTAC	3 cut(s)	650, 960, 1515
DdeI	CTNAG	6 cut(s)	66, 435, 1038, 1390, 1526, 1712
DpnI	GATC	4 cut(s)	81, 167, 798, 1074
DpnII	GATC	4 cut(s)	79, 165, 796, 1072
EaeI	YGGCCR	3 cut(s)	290, 475, 1097
EagI	CGGCCG	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Ecl136II	GAGCTC	2 cut(s)	460, 526
EclXI	CGGCCG	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	1094, 1720
Eco24I	GRGCYC	4 cut(s)	462, 528, 1033, 1303
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	2 cut(s)	787, 1552
Eco52I	CGGCCG	1 cut(s)	290
Eco53kI	GAGCTC	2 cut(s)	460, 526
Eco88I	CYCGRG	1 cut(s)	149
EcoICRI	GAGCTC	2 cut(s)	460, 526
EcoRII	CCWGG	2 cut(s)	777, 1193
EcoT14I	CCWWGG	2 cut(s)	1094, 1720
EcoT22I	ATGCAT	1 cut(s)	667
EcoT38I	GRGCYC	4 cut(s)	462, 528, 1033, 1303
ErhI	CCWWGG	2 cut(s)	1094, 1720
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	6 cut(s)	680, 1255, 1571, 1673, 1685, 1745
FaqI	GGGAC	2 cut(s)	364, 1646
FatI	CATG	6 cut(s)	676, 1251, 1567, 1669, 1681, 1741
FauI	CCCGC	1 cut(s)	306
FauNDI	CATATG	1 cut(s)	1582
FblI	GTMKAC	3 cut(s)	266, 494, 687
Fnu4HI	GCNGC	7 cut(s)	290, 302, 332, 341, 344, 1015, 1173
FokI	GGATG	4 cut(s)	608, 845, 1176, 1507
FriOI	GRGCYC	4 cut(s)	462, 528, 1033, 1303
Fsp4HI	GCNGC	7 cut(s)	290, 302, 332, 341, 344, 1015, 1173
FspBI	CTAG	4 cut(s)	123, 647, 1463, 1752
GlaI	GCGC	7 cut(s)	216, 259, 330, 339, 1136, 1268, 1356
GluI	GCNGC	7 cut(s)	290, 302, 332, 341, 344, 1015, 1173
GsuI	CTGGAG	2 cut(s)	761, 997
HaeII	RGCGCY	2 cut(s)	332, 1138
HaeIII	GGCC	7 cut(s)	292, 477, 534, 867, 1099, 1409, 1653
HapII	CCGG	9 cut(s)	83, 105, 212, 245, 277, 311, 377, 633, 1756
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	7 cut(s)	217, 260, 331, 340, 1137, 1269, 1357
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	6 cut(s)	680, 1255, 1571, 1673, 1685, 1745
Hin6I	GCGC	7 cut(s)	215, 258, 329, 338, 1135, 1267, 1355
HinP1I	GCGC	7 cut(s)	215, 258, 329, 338, 1135, 1267, 1355
HincII	GTYRAC	1 cut(s)	267
HindII	GTYRAC	1 cut(s)	267
HindIII	AAGCTT	2 cut(s)	624, 1387
HinfI	GANTC	5 cut(s)	62, 208, 373, 839, 1040
HpaII	CCGG	9 cut(s)	83, 105, 212, 245, 277, 311, 377, 633, 1756
HphI	GGTGA	4 cut(s)	97, 367, 476, 1266
Hpy166II	GTNNAC	5 cut(s)	267, 495, 688, 822, 1534
Hpy188I	TCNGA	4 cut(s)	61, 207, 874, 1639
Hpy8I	GTNNAC	5 cut(s)	267, 495, 688, 822, 1534
Hpy99I	CGWCG	3 cut(s)	271, 310, 1706
HpyCH4III	ACNGT	9 cut(s)	163, 203, 355, 654, 736, 846, 1216, 1321, 1556
HpyF3I	CTNAG	6 cut(s)	66, 435, 1038, 1390, 1526, 1712
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	6 cut(s)	680, 1255, 1571, 1673, 1685, 1745
HspAI	GCGC	7 cut(s)	215, 258, 329, 338, 1135, 1267, 1355
Kpn2I	TCCGGA	1 cut(s)	376
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Kzo9I	GATC	4 cut(s)	79, 165, 796, 1072
LmnI	GCTCC	3 cut(s)	978, 1345, 1561
Lsp1109I	GCAGC	3 cut(s)	318, 1026, 1159
LweI	GCATC	3 cut(s)	652, 715, 1420
MaeI	CTAG	4 cut(s)	123, 647, 1463, 1752
MaeIII	GTNAC	3 cut(s)	403, 446, 942
MalI	GATC	4 cut(s)	81, 167, 798, 1074
MboI	GATC	4 cut(s)	79, 165, 796, 1072
MboII	GAAGA	8 cut(s)	217, 247, 274, 479, 683, 734, 848, 1670
MfeI	CAATTG	1 cut(s)	582
MflI	RGATCY	2 cut(s)	79, 796
MhlI	GDGCHC	5 cut(s)	104, 462, 528, 1033, 1303
MlsI	TGGCCA	1 cut(s)	1099
MluCI	AATT	8 cut(s)	94, 582, 811, 1204, 1221, 1449, 1508, 1733
MluNI	TGGCCA	1 cut(s)	1099
MlyI	GAGTC	2 cut(s)	217, 1049
Mox20I	TGGCCA	1 cut(s)	1099
Mph1103I	ATGCAT	1 cut(s)	667
MroI	TCCGGA	1 cut(s)	376
MroNI	GCCGGC	1 cut(s)	310
MscI	TGGCCA	1 cut(s)	1099
MseI	TTAA	9 cut(s)	752, 801, 900, 1184, 1200, 1218, 1238, 1295, 1473
MslI	CAYNNNNRTG	2 cut(s)	681, 695
Msp20I	TGGCCA	1 cut(s)	1099
MspA1I	CMGCKG	1 cut(s)	1172
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	9 cut(s)	83, 105, 212, 245, 277, 311, 377, 633, 1756
MspR9I	CCNGG	4 cut(s)	634, 779, 1195, 1757
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	2 cut(s)	779, 1195
MvnI	CGCG	3 cut(s)	260, 340, 764
NaeI	GCCGGC	1 cut(s)	312
NciI	CCSGG	2 cut(s)	634, 1757
NdeI	CATATG	1 cut(s)	1582
NdeII	GATC	4 cut(s)	79, 165, 796, 1072
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	6 cut(s)	680, 1255, 1571, 1673, 1685, 1745
NmeAIII	GCCGAG	2 cut(s)	297, 503
NmuCI	GTSAC	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	667
NspI	RCATGY	1 cut(s)	1571
PaeR7I	CTCGAG	1 cut(s)	149
PagI	TCATGA	2 cut(s)	1251, 1681
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PctI	GAATGC	1 cut(s)	256
PdiI	GCCGGC	1 cut(s)	312
PfeI	GAWTC	3 cut(s)	62, 373, 839
PflMI	CCANNNNNTGG	1 cut(s)	784
PkrI	GCNGC	7 cut(s)	291, 303, 333, 342, 345, 1016, 1174
PleI	GAGTC	2 cut(s)	216, 1048
PpsI	GAGTC	2 cut(s)	216, 1048
PshBI	ATTAAT	1 cut(s)	1238
Psp124BI	GAGCTC	2 cut(s)	462, 528
Psp6I	CCWGG	2 cut(s)	777, 1193
PspGI	CCWGG	2 cut(s)	777, 1193
PspPI	GGNCC	4 cut(s)	532, 787, 1552, 1652
PspXI	VCTCGAGB	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	2 cut(s)	79, 796
PvuII	CAGCTG	1 cut(s)	1172
RsaI	GTAC	3 cut(s)	651, 961, 1516
RsaNI	GTAC	3 cut(s)	650, 960, 1515
RseI	CAYNNNNRTG	2 cut(s)	681, 695
SacI	GAGCTC	2 cut(s)	462, 528
SalI	GTCGAC	1 cut(s)	265
SaqAI	TTAA	9 cut(s)	752, 801, 900, 1184, 1200, 1218, 1238, 1295, 1473
SatI	GCNGC	7 cut(s)	290, 302, 332, 341, 344, 1015, 1173
Sau3AI	GATC	4 cut(s)	79, 165, 796, 1072
Sau96I	GGNCC	4 cut(s)	532, 787, 1552, 1652
SchI	GAGTC	2 cut(s)	217, 1049
ScrFI	CCNGG	4 cut(s)	634, 779, 1195, 1757
SduI	GDGCHC	5 cut(s)	104, 462, 528, 1033, 1303
SfaNI	GCATC	3 cut(s)	652, 715, 1420
SfcI	CTRYAG	3 cut(s)	199, 855, 1110
Sfr274I	CTCGAG	1 cut(s)	149
SgrAI	CRCCGGYG	1 cut(s)	104
SinI	GGWCC	2 cut(s)	787, 1552
SlaI	CTCGAG	1 cut(s)	149
SmiMI	CAYNNNNRTG	2 cut(s)	681, 695
SmlI	CTYRAG	4 cut(s)	149, 527, 800, 1541
SmoI	CTYRAG	4 cut(s)	149, 527, 800, 1541
Sse9I	AATT	8 cut(s)	94, 582, 811, 1204, 1221, 1449, 1508, 1733
SsiI	CCGC	8 cut(s)	53, 289, 299, 302, 340, 343, 1282, 1673
SspI	AATATT	2 cut(s)	750, 1242
SspMI	CTAG	4 cut(s)	123, 647, 1463, 1752
SstI	GAGCTC	2 cut(s)	462, 528
StyD4I	CCNGG	4 cut(s)	632, 777, 1193, 1755
StyI	CCWWGG	2 cut(s)	1094, 1720
TaaI	ACNGT	9 cut(s)	163, 203, 355, 654, 736, 846, 1216, 1321, 1556
TaqI	TCGA	8 cut(s)	98, 114, 150, 233, 266, 793, 827, 1033
TasI	AATT	8 cut(s)	94, 582, 811, 1204, 1221, 1449, 1508, 1733
TatI	WGTACW	2 cut(s)	649, 1514
TauI	GCSGC	4 cut(s)	292, 304, 343, 346
TfiI	GAWTC	3 cut(s)	62, 373, 839
Tru1I	TTAA	9 cut(s)	752, 801, 900, 1184, 1200, 1218, 1238, 1295, 1473
Tru9I	TTAA	9 cut(s)	752, 801, 900, 1184, 1200, 1218, 1238, 1295, 1473
TscAI	CASTG	1 cut(s)	1219
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	3 cut(s)	331, 1014, 1172
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	9 cut(s)	849, 906, 1101, 1268, 1430, 1451, 1599, 1658, 1670
TspGWI	ACGGA	2 cut(s)	183, 1171
TspRI	CASTG	1 cut(s)	1219
Van91I	CCANNNNNTGG	1 cut(s)	784
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	2 cut(s)	787, 1552
VspI	ATTAAT	1 cut(s)	1238
XapI	RAATTY	3 cut(s)	811, 1221, 1508
XceI	RCATGY	1 cut(s)	1571
XhoI	CTCGAG	1 cut(s)	149
XmiI	GTMKAC	3 cut(s)	266, 494, 687
XspI	CTAG	4 cut(s)	123, 647, 1463, 1752
Zsp2I	ATGCAT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.