Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

16357173 .. 16360531

Gene Structure 3359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG178300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAAGGACACATTGGTTTCAACAATAGACATAGAGCAGGAGGTCGAGGGAATTGAAGAAAATCAACCTGACATTAAAGGTAAATGCGAAGTACATGAACCTCCATCCCGATTCTTCAAGAGGCCGTTCTCAGTTCCTTCACCAGCAAAGCATATGAGGGCGCTTCTAGCAAGGGTGCTGGGGTTTTTTAAGTGGAAGGAGCAGGGTAGCATGACAAGGCTTCAGAAGAGTTTCGGGTATGTGACTGGAGAACAGGTTAAGGAGCTTGGAGAACAGGTTGAGGGCGGAACGGGGCTAGATAAGAGCTTTGGGTTCTCAAAGAATTTGATTAAAATGTATGAGCTTGGAAGTATGGTTGGGTTCGGGCATTTTTCCTACACTTGCATAGCTACTTTTAAGAAGGGAAAGCTTGAGGGCCACCATGCTGCTGTCAAGGTCATCTCCAAAGCCAAGATGGCTACTGCTATTGCCATTGATGATGTGAGAAGGGAAGTAAAGATATTGAGGGCTTTGAAAGGACATAACAATATAGTAAAATTTTATGATGCATATGAAGACCATGACAATGTCTACATAGTGATGGAATATTGTGCAGGAGGGGAGCTCCTAGATAGTATACTTGCAAGGGGTGGGAAATACCCCGAGGATGATGCAAGGACCTGTGTGGTTCATAGGGATCTTAAACCTGAGGCTCTTTCCAAGACATTGACTCCGGAAGACCTTTCTTATATGGAGGAGCAGTTTGAACAACTGGAACCAGACGGCAGTGGCACAATAGGCTTAGAAAATATTAAAACGGCCTTGATGAAAAATGCAACTGATGCAATGAAAGAGGGACGATATGAGGATCTTCTAGCATCACTTAATGCATTGCAATACAGAAGAATGGCGTTTAAGGAATTTTGTGCAGCCACATTGTGTGTCCACCAACTTGAGGCTCTTGATCAATGGGAGCAACAATCTCGTTATGCCTATGAACTTTTTGATAAGGATGGCAACAAGGTTGTTATCACGGAGGAGCTGGCTTCGGAGCTTGACCTCGGCCCTTCTGTCCTTGTTCATGCTTTTCTTCGTGATTGGATTAGGCAAACTGATGGGAAACTTAGTTTCGTTGGGTTTGTCAAGTTGTTGCATGGGGTTTCTGGCCGCACCTTGCGAAAGGTGAATGATAGTACGTTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

394

Amino Acids

44.4

Weight (kDa)

5.95

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	113 - 221	4.2e-17	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	115 - 211	7.8e-12	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	570, 616
AccIII	TCCGGA	1 cut(s)	712
AciI	CCGC	2 cut(s)	285, 1147
AclWI	GGATC	2 cut(s)	684, 855
AcoI	YGGCCR	1 cut(s)	1144
AcsI	RAATTY	3 cut(s)	322, 536, 899
AcuI	CTGAAG	1 cut(s)	206
AdeI	CACNNNGTG	1 cut(s)	918
AfaI	GTAC	2 cut(s)	93, 1174
AfiI	CCNNNNNNNGG	1 cut(s)	934
AgsI	TTSAA	5 cut(s)	21, 56, 118, 514, 746
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	8 cut(s)	265, 306, 343, 389, 409, 604, 1021, 1033
AluI	AGCT	8 cut(s)	265, 306, 343, 389, 409, 604, 1021, 1033
Alw21I	GWGCWC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	684, 855
Ama87I	CYCGRG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	5 cut(s)	122, 415, 798, 1042, 1144
ApeKI	GCWGC	2 cut(s)	425, 908
ApoI	RAATTY	3 cut(s)	322, 536, 899
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	3 cut(s)	415, 657, 1043
AsuHPI	GGTGA	2 cut(s)	132, 1174
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	657
AxyI	CCTNAGG	1 cut(s)	687
BanII	GRGCYC	1 cut(s)	606
BbsI	GAAGAC	2 cut(s)	561, 723
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	2 cut(s)	412, 920
BccI	CCATC	5 cut(s)	112, 448, 574, 986, 1088
BceAI	ACGGC	3 cut(s)	109, 778, 813
BcgI	CGANNNNNNTGC	4 cut(s)	632, 666, 944, 978
BclI	TGATCA	1 cut(s)	943
BfaI	CTAG	4 cut(s)	167, 296, 608, 854
BfoI	RGCGCY	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	455
BisI	GCNGC	3 cut(s)	426, 909, 1147
BlsI	GCNGC	3 cut(s)	427, 910, 1148
Bme18I	GGWCC	1 cut(s)	657
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	3 cut(s)	415, 657, 1043
BmiI	GGNNCC	1 cut(s)	756
BmsI	GCATC	4 cut(s)	535, 640, 811, 866
BpiI	GAAGAC	2 cut(s)	561, 723
BplI	GAGNNNNNCTC	2 cut(s)	588, 620
BpmI	CTGGAG	1 cut(s)	267
BpuEI	CTTGAG	2 cut(s)	431, 953
BsaJI	CCNNGG	2 cut(s)	642, 1039
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	8 cut(s)	240, 261, 270, 291, 694, 724, 725, 755
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse1I	ACTGG	2 cut(s)	250, 756
Bse21I	CCTNAGG	1 cut(s)	687
Bse3DI	GCAATG	2 cut(s)	831, 869
BseAI	TCCGGA	1 cut(s)	712
BseDI	CCNNGG	2 cut(s)	642, 1039
BseGI	GGATG	3 cut(s)	104, 652, 997
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMI	GCAATG	2 cut(s)	831, 869
BseMII	CTCAG	2 cut(s)	144, 678
BseNI	ACTGG	2 cut(s)	250, 756
BseRI	GAGGAG	2 cut(s)	749, 1031
BseXI	GCAGC	2 cut(s)	412, 920
BseYI	CCCAGC	1 cut(s)	178
BsgI	GTGCAG	2 cut(s)	612, 927
BshFI	GGCC	5 cut(s)	124, 417, 800, 1044, 1146
BsiHKAI	GWGCWC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	1 cut(s)	934
BsmFI	GGGAC	1 cut(s)	849
BsnI	GGCC	5 cut(s)	124, 417, 800, 1044, 1146
BsoBI	CYCGRG	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp13I	TCCGGA	1 cut(s)	712
Bsp143I	GATC	3 cut(s)	676, 847, 943
BspACI	CCGC	2 cut(s)	285, 1147
BspANI	GGCC	5 cut(s)	124, 417, 800, 1044, 1146
BspCNI	CTCAG	2 cut(s)	143, 679
BspEI	TCCGGA	1 cut(s)	712
BspLI	GGNNCC	1 cut(s)	756
BspPI	GGATC	2 cut(s)	684, 855
BsrDI	GCAATG	2 cut(s)	831, 869
BsrI	ACTGG	2 cut(s)	250, 756
BssECI	CCNNGG	2 cut(s)	642, 1039
BssMI	GATC	3 cut(s)	676, 847, 943
BssNAI	GTATAC	1 cut(s)	617
Bst1107I	GTATAC	1 cut(s)	617
Bst6I	CTCTTC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	1023
BstDEI	CTNAG	4 cut(s)	130, 687, 781, 1103
BstF5I	GGATG	3 cut(s)	104, 652, 997
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	3 cut(s)	679, 850, 946
BstMBI	GATC	3 cut(s)	676, 847, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 455, 777, 821
BstV1I	GCAGC	2 cut(s)	412, 920
BstV2I	GAAGAC	2 cut(s)	561, 723
BstX2I	RGATCY	2 cut(s)	676, 847
BstYI	RGATCY	2 cut(s)	676, 847
BstZ17I	GTATAC	1 cut(s)	617
Bsu36I	CCTNAGG	1 cut(s)	687
BsuRI	GGCC	5 cut(s)	124, 417, 800, 1044, 1146
BtsCI	GGATG	3 cut(s)	104, 652, 997
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	1 cut(s)	772
Cac8I	GCNNGC	1 cut(s)	1023
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	3 cut(s)	415, 657, 1043
Csp6I	GTAC	2 cut(s)	92, 1173
CviAII	CATG	6 cut(s)	95, 211, 422, 560, 1061, 1133
CviQI	GTAC	2 cut(s)	92, 1173
DdeI	CTNAG	4 cut(s)	130, 687, 781, 1103
DpnI	GATC	3 cut(s)	678, 849, 945
DpnII	GATC	3 cut(s)	676, 847, 943
DraIII	CACNNNGTG	1 cut(s)	918
EaeI	YGGCCR	1 cut(s)	1144
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	1 cut(s)	300
Ecl136II	GAGCTC	1 cut(s)	604
Eco24I	GRGCYC	1 cut(s)	606
Eco47I	GGWCC	1 cut(s)	657
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	641
EcoICRI	GAGCTC	1 cut(s)	604
EcoO109I	RGGNCCY	1 cut(s)	657
EcoT22I	ATGCAT	2 cut(s)	550, 871
EcoT38I	GRGCYC	1 cut(s)	606
FaeI	CATG	6 cut(s)	98, 214, 425, 563, 1064, 1136
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	6 cut(s)	94, 210, 421, 559, 1060, 1132
FauNDI	CATATG	2 cut(s)	153, 550
FbaI	TGATCA	1 cut(s)	943
FblI	GTMKAC	2 cut(s)	570, 616
Fnu4HI	GCNGC	3 cut(s)	426, 909, 1147
FokI	GGATG	3 cut(s)	91, 659, 1004
FriOI	GRGCYC	1 cut(s)	606
Fsp4HI	GCNGC	3 cut(s)	426, 909, 1147
FspBI	CTAG	4 cut(s)	167, 296, 608, 854
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	3 cut(s)	426, 909, 1147
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	5 cut(s)	124, 417, 800, 1044, 1146
HapII	CCGG	1 cut(s)	713
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	6 cut(s)	98, 214, 425, 563, 1064, 1136
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	407
HinfI	GANTC	2 cut(s)	111, 709
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	2 cut(s)	132, 1174
Hpy166II	GTNNAC	3 cut(s)	571, 617, 925
Hpy188I	TCNGA	2 cut(s)	225, 1030
Hpy188III	TCNNGA	5 cut(s)	108, 118, 713, 941, 1073
Hpy8I	GTNNAC	3 cut(s)	571, 617, 925
HpyAV	CCTTC	5 cut(s)	147, 190, 394, 480, 1056
HpyCH4IV	ACGT	1 cut(s)	1175
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 455, 777, 821
HpyF3I	CTNAG	4 cut(s)	130, 687, 781, 1103
HpySE526I	ACGT	1 cut(s)	1175
Hsp92II	CATG	6 cut(s)	98, 214, 425, 563, 1064, 1136
HspAI	GCGC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	3 cut(s)	676, 847, 943
LmnI	GCTCC	8 cut(s)	199, 262, 601, 609, 736, 952, 1018, 1030
Lsp1109I	GCAGC	2 cut(s)	412, 920
LweI	GCATC	4 cut(s)	535, 640, 811, 866
MaeI	CTAG	4 cut(s)	167, 296, 608, 854
MaeII	ACGT	1 cut(s)	1175
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	3 cut(s)	678, 849, 945
MboI	GATC	3 cut(s)	676, 847, 943
MboII	GAAGA	8 cut(s)	68, 106, 238, 566, 728, 842, 894, 1061
MflI	RGATCY	2 cut(s)	676, 847
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	4 cut(s)	51, 322, 536, 899
MlyI	GAGTC	1 cut(s)	703
Mph1103I	ATGCAT	2 cut(s)	550, 871
MroI	TCCGGA	1 cut(s)	712
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	9 cut(s)	75, 189, 258, 330, 396, 681, 792, 864, 894
MslI	CAYNNNNRTG	2 cut(s)	564, 578
MspI	CCGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	4 cut(s)	167, 455, 777, 821
NdeI	CATATG	2 cut(s)	153, 550
NdeII	GATC	3 cut(s)	676, 847, 943
NlaIII	CATG	6 cut(s)	98, 214, 425, 563, 1064, 1136
NlaIV	GGNNCC	1 cut(s)	756
NmeAIII	GCCGAG	1 cut(s)	1020
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	2 cut(s)	550, 871
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	111
PflFI	GACNNNGTC	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	427, 910, 1148
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	606
Psp5II	RGGWCCY	1 cut(s)	657
PspFI	CCCAGC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	756
PspPI	GGNCC	3 cut(s)	415, 657, 1043
PspPPI	RGGWCCY	1 cut(s)	657
PsuI	RGATCY	2 cut(s)	676, 847
PsyI	GACNNNGTC	1 cut(s)	566
RsaI	GTAC	2 cut(s)	93, 1174
RsaNI	GTAC	2 cut(s)	92, 1173
RseI	CAYNNNNRTG	2 cut(s)	564, 578
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	9 cut(s)	75, 189, 258, 330, 396, 681, 792, 864, 894
SatI	GCNGC	3 cut(s)	426, 909, 1147
Sau3AI	GATC	3 cut(s)	676, 847, 943
Sau96I	GGNCC	3 cut(s)	415, 657, 1043
SchI	GAGTC	1 cut(s)	703
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	4 cut(s)	535, 640, 811, 866
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	564, 578
SmlI	CTYRAG	2 cut(s)	410, 932
SmoI	CTYRAG	2 cut(s)	410, 932
Sse9I	AATT	4 cut(s)	51, 322, 536, 899
SsiI	CCGC	2 cut(s)	285, 1147
SspI	AATATT	2 cut(s)	587, 790
SspMI	CTAG	4 cut(s)	167, 296, 608, 854
SstI	GAGCTC	1 cut(s)	606
TaiI	ACGT	1 cut(s)	1178
TaqI	TCGA	1 cut(s)	45
TasI	AATT	4 cut(s)	51, 322, 536, 899
TatI	WGTACW	1 cut(s)	91
TauI	GCSGC	1 cut(s)	1149
TfiI	GAWTC	1 cut(s)	111
Tru1I	TTAA	9 cut(s)	75, 189, 258, 330, 396, 681, 792, 864, 894
Tru9I	TTAA	9 cut(s)	75, 189, 258, 330, 396, 681, 792, 864, 894
TscAI	CASTG	1 cut(s)	772
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	425, 908
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	8 cut(s)	17, 111, 567, 659, 821, 842, 990, 1049
TspGWI	ACGGA	1 cut(s)	1028
TspRI	CASTG	1 cut(s)	772
Tth111I	GACNNNGTC	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	3 cut(s)	322, 536, 899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmiI	GTMKAC	2 cut(s)	570, 616
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	4 cut(s)	167, 296, 608, 854
Zsp2I	ATGCAT	2 cut(s)	550, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.