Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8294349.1

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 794

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8294349.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

atgaaggtttatatgcgctcatcacctctccgcaaaactgctttaagggctctttccaagacattgactgttgatgagctttgctatttgaaggagcagtttgcgcttttagaaccaaacaaaaatggcacaataagcttagaaaacatcaaaacggccttgatgaaaaatgcaactgatgcaatgaaggaggcacgaattgctgattttctagcatcacttaatgcattgcaatacagaaggatggattttgaggaattttgtacagctgcactaagtgtccaccaacttgaggctctggaccgttgggagcaacatgctcgttgtgcatatgaactttttgacaaggaaggcaacagggctattgtcattgaggaactggcttcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

129

Amino Acids

14.79

Weight (kDa)

6.14

Isoelectric Point (pI)

44.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	257
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	91
AluBI	AGCT	3 cut(s)	79, 138, 269
AluI	AGCT	3 cut(s)	79, 138, 269
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	269
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	18, 106
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	302, 336
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmsI	GCATC	2 cut(s)	169, 224
BpuEI	CTTGAG	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	189, 227
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	2 cut(s)	189, 227
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	256
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	1 cut(s)	158
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp1407I	TGTACA	1 cut(s)	263
BspACI	CCGC	1 cut(s)	31
BspANI	GGCC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	189, 227
BsrGI	TGTACA	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	70, 305
BstAPI	GCANNNNNTGC	2 cut(s)	179, 200
BstAUI	TGTACA	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	139, 275
BstF5I	GGATG	1 cut(s)	249
BstHHI	GCGC	2 cut(s)	18, 106
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 103, 135, 179, 200, 326
BstNSI	RCATGY	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	249
CfoI	GCGC	2 cut(s)	18, 106
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	317
CviJI	RGCY	8 cut(s)	50, 79, 138, 158, 269, 296, 362, 383
CviKI_1	RGCY	8 cut(s)	50, 79, 138, 158, 269, 296, 362, 383
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	139, 275
DraIII	CACNNNGTG	1 cut(s)	278
Eco24I	GRGCYC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	301
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	1 cut(s)	320
FaiI	YATR	5 cut(s)	12, 14, 318, 331, 333
FatI	CATG	1 cut(s)	316
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	270
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	1 cut(s)	270
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	2 cut(s)	17, 105
GluI	GCNGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	158
HhaI	GCGC	2 cut(s)	18, 106
Hin1II	CATG	1 cut(s)	320
Hin6I	GCGC	2 cut(s)	16, 104
HinP1I	GCGC	2 cut(s)	16, 104
HindIII	AAGCTT	1 cut(s)	136
HphI	GGTGA	1 cut(s)	15
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	1 cut(s)	299
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	4 cut(s)	85, 181, 234, 344
HpyCH4III	ACNGT	2 cut(s)	70, 305
HpyCH4V	TGCA	6 cut(s)	173, 182, 227, 232, 272, 329
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 103, 135, 179, 200, 326
HpyF3I	CTNAG	2 cut(s)	139, 275
Hsp92II	CATG	1 cut(s)	320
HspAI	GCGC	2 cut(s)	16, 104
LmnI	GCTCC	2 cut(s)	94, 310
LpnPI	CCDG	3 cut(s)	284, 343, 365
Lsp1109I	GCAGC	1 cut(s)	256
LweI	GCATC	2 cut(s)	169, 224
MaeI	CTAG	1 cut(s)	212
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	2 cut(s)	198, 257
MnlI	CCTC	5 cut(s)	36, 184, 247, 286, 367
Mph1103I	ATGCAT	1 cut(s)	229
MseI	TTAA	2 cut(s)	44, 222
MspA1I	CMGCKG	1 cut(s)	269
MwoI	GCNNNNNNNGC	6 cut(s)	47, 103, 135, 179, 200, 326
NdeI	CATATG	1 cut(s)	331
NlaIII	CATG	1 cut(s)	320
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	301
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	44, 222
SatI	GCNGC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	5 cut(s)	9, 28, 81, 140, 271
SfaNI	GCATC	2 cut(s)	169, 224
SinI	GGWCC	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	198, 257
SsiI	CCGC	1 cut(s)	31
SspMI	CTAG	1 cut(s)	212
TaaI	ACNGT	2 cut(s)	70, 305
TasI	AATT	2 cut(s)	198, 257
TatI	WGTACW	1 cut(s)	263
Tru1I	TTAA	2 cut(s)	44, 222
Tru9I	TTAA	2 cut(s)	44, 222
TseI	GCWGC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	17, 179, 200, 348
VpaK11BI	GGWCC	1 cut(s)	301
XapI	RAATTY	1 cut(s)	257
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.