Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

15829110 .. 15837861

Gene Structure 8752 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG179500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAAGGACACATTGGTTTCAACAATAGACATAGATCAGGAGGTCGAGGGAATTGAAGGGAGTGGTGTTAAAGAAAATCAACCTGACATTAAAGGTTCATGCGAAGTACATGAACCTCCATCCCGATTCTTCAAGAGGCCGTTCTCAGTTCCTTCACCAGCAAATCATATGAGGGCGCTTCTAGCAAGGGTGCTGGGGTTTTTTAAGTGGAAGGAGCAGGGTAGCATGACAAGGCTTCAGAAGAGTTTCGGGTATGTGACTGGAGAACAGGTTAAGGAGCTTGGAGAACAGGTTGAGGGCGGAACGGGGCTAGATAAGAGCTTTGGGTTCTCAAAGAATTTGATTAAAATGTATGAGCATGGAAGTATGGTTGGGTTCGGGCATTTTTCCTACACTTGCATAGCTACTTTTAAGAAGGGAAAGCTTGAGGGCCACCATGCTGCTGTCAAGGTCATCTCTAAAGCCAAGATGGCTACTGCTATTGCCATTGATGATGTGAGAAGGGAAGCAAAGATATTGAGGGCTTTGAAAGGACATAACAATATAGTAAAATTTTATGATGCATATGAAGACCATGACAATGTCTACATAGTGATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

200

Amino Acids

22.37

Weight (kDa)

8.41

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	118 - 200	3.1e-11	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	122 - 200	4.4e-07	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	585
AciI	CCGC	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	337, 551
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	108
AgsI	TTSAA	4 cut(s)	21, 56, 133, 529
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	4 cut(s)	280, 321, 404, 424
AluI	AGCT	4 cut(s)	280, 321, 404, 424
AoxI	GGCC	2 cut(s)	137, 430
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	2 cut(s)	337, 551
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	3 cut(s)	127, 463, 589
BceAI	ACGGC	1 cut(s)	124
BfaI	CTAG	2 cut(s)	182, 311
BfoI	RGCGCY	1 cut(s)	179
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	441
BlsI	GCNGC	1 cut(s)	442
BmgT120I	GGNCC	1 cut(s)	430
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	576
BpmI	CTGGAG	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	446
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 276, 285, 306
Bse1I	ACTGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	427
BseYI	CCCAGC	1 cut(s)	193
BshFI	GGCC	2 cut(s)	139, 432
BsnI	GGCC	2 cut(s)	139, 432
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	2 cut(s)	139, 432
BspCNI	CTCAG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	34
Bst6I	CTCTTC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	179
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 470
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	139, 432
BtsCI	GGATG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	6 cut(s)	99, 110, 226, 359, 437, 575
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
EciI	GGCGGA	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	565
FaeI	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
FatI	CATG	6 cut(s)	98, 109, 225, 358, 436, 574
FauNDI	CATATG	2 cut(s)	168, 565
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	1 cut(s)	441
FokI	GGATG	1 cut(s)	106
Fsp4HI	GCNGC	1 cut(s)	441
FspBI	CTAG	2 cut(s)	182, 311
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	441
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	1 cut(s)	179
HaeIII	GGCC	2 cut(s)	139, 432
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	1 cut(s)	126
HphI	GGTGA	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	3 cut(s)	38, 123, 133
Hpy8I	GTNNAC	1 cut(s)	586
HpyAV	CCTTC	5 cut(s)	50, 162, 205, 409, 495
HpyCH4V	TGCA	2 cut(s)	399, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 470
HpyF3I	CTNAG	1 cut(s)	145
Hsp92II	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	1 cut(s)	34
LmnI	GCTCC	2 cut(s)	214, 277
LpnPI	CCDG	8 cut(s)	23, 96, 171, 179, 203, 246, 254, 275
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	1 cut(s)	550
MaeI	CTAG	2 cut(s)	182, 311
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	121, 253, 581
MluCI	AATT	3 cut(s)	51, 337, 551
MnlI	CCTC	8 cut(s)	34, 40, 126, 129, 165, 289, 421, 513
Mph1103I	ATGCAT	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	245
MseI	TTAA	6 cut(s)	69, 90, 204, 273, 345, 411
MslI	CAYNNNNRTG	2 cut(s)	579, 593
MwoI	GCNNNNNNNGC	2 cut(s)	182, 470
NdeI	CATATG	2 cut(s)	168, 565
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	6 cut(s)	102, 113, 229, 362, 440, 578
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	565
PdmI	GAANNNNTTC	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	126
PflFI	GACNNNGTC	1 cut(s)	581
PkrI	GCNGC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	581
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
RseI	CAYNNNNRTG	2 cut(s)	579, 593
SaqAI	TTAA	6 cut(s)	69, 90, 204, 273, 345, 411
SatI	GCNGC	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	430
SfaNI	GCATC	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	579, 593
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	51, 337, 551
SsiI	CCGC	1 cut(s)	300
SspMI	CTAG	2 cut(s)	182, 311
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	51, 337, 551
TatI	WGTACW	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	6 cut(s)	69, 90, 204, 273, 345, 411
Tru9I	TTAA	6 cut(s)	69, 90, 204, 273, 345, 411
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	440
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	4 cut(s)	17, 87, 126, 582
Tth111I	GACNNNGTC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	337, 551
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	245
XspI	CTAG	2 cut(s)	182, 311
Zsp2I	ATGCAT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.