Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Reverse (-)

76945467 .. 76946503

Gene Structure 1037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTCCCGAACTTTTTTTATTGTCAGGCCTTGATGAAAAATGCAACTGATGCAATGAAAGAGGGACGATATGAGGACCTTCTAGCATCACTTAATGCATTGCAATACAGAAGAATGGAGTTTAAGGAATTTTGTGCAGCCACACTGTGTGTCCACCAACTTGAGGCTCTTGATCAATGGGAGCAACAATCTCGTTATGCCTATGAACTTTTTGATAAGGATGGCAACAAGGTTGTTATCACGGAGGAGCTGGCTTCGGAGCTTGACCTCGGCCCTTCTGTCCTTGTTCATGCTTTTCTTCGTGATTGGATTAGGCAAACTGATGGGAAACTTAGTTTCGTTGGGTTTGTCAAGTTGTTGCATGGGGTTTCTGGCCGCACCTTGCGAAAGCTGAATGATAGTACATTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

137

Amino Acids

15.81

Weight (kDa)

5.6

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	128
AdeI	CACNNNGTG	2 cut(s)	147, 149
AfaI	GTAC	1 cut(s)	403
AfiI	CCNNNNNNNGG	1 cut(s)	163
AluBI	AGCT	3 cut(s)	250, 262, 391
AluI	AGCT	3 cut(s)	250, 262, 391
AoxI	GGCC	3 cut(s)	27, 271, 373
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	76, 272
AvaII	GGWCC	1 cut(s)	76
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	215, 317
BcgI	CGANNNNNNTGC	2 cut(s)	173, 207
BclI	TGATCA	1 cut(s)	172
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	2 cut(s)	138, 376
BlsI	GCNGC	2 cut(s)	139, 377
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	76, 272
BmsI	GCATC	2 cut(s)	40, 95
BpuEI	CTTGAG	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse3DI	GCAATG	3 cut(s)	60, 98, 404
BseDI	CCNNGG	1 cut(s)	268
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	3 cut(s)	60, 98, 404
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	29, 273, 375
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	3 cut(s)	29, 273, 375
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	1 cut(s)	376
BspANI	GGCC	3 cut(s)	29, 273, 375
BsrDI	GCAATG	3 cut(s)	60, 98, 404
BssECI	CCNNGG	1 cut(s)	268
BssMI	GATC	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	29, 273, 375
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	76, 272
Csp6I	GTAC	1 cut(s)	402
CviAII	CATG	2 cut(s)	290, 362
CviJI	RGCY	9 cut(s)	29, 140, 167, 250, 254, 262, 273, 375, 391
CviKI_1	RGCY	9 cut(s)	29, 140, 167, 250, 254, 262, 273, 375, 391
CviQI	GTAC	1 cut(s)	402
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraIII	CACNNNGTG	2 cut(s)	147, 149
EaeI	YGGCCR	1 cut(s)	373
Eco147I	AGGCCT	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	76
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	100
FaeI	CATG	2 cut(s)	293, 365
FaiI	YATR	5 cut(s)	72, 198, 204, 291, 363
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	289, 361
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	138, 376
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	138, 376
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	2 cut(s)	138, 376
HaeIII	GGCC	3 cut(s)	29, 273, 375
Hin1II	CATG	2 cut(s)	293, 365
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	259
Hpy188III	TCNNGA	3 cut(s)	7, 170, 302
Hpy8I	GTNNAC	1 cut(s)	154
HpyAV	CCTTC	2 cut(s)	89, 285
HpyCH4III	ACNGT	1 cut(s)	147
HpyCH4V	TGCA	7 cut(s)	44, 53, 98, 103, 137, 361, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	293, 365
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	4 cut(s)	9, 181, 247, 259
LpnPI	CCDG	3 cut(s)	11, 236, 357
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	2 cut(s)	40, 95
MaeI	CTAG	1 cut(s)	83
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	2 cut(s)	123, 290
MluCI	AATT	1 cut(s)	128
MnlI	CCTC	5 cut(s)	55, 67, 157, 238, 278
Mph1103I	ATGCAT	1 cut(s)	100
MseI	TTAA	2 cut(s)	93, 123
MslI	CAYNNNNRTG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	293, 365
NmeAIII	GCCGAG	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	100
PceI	AGGCCT	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	139, 377
PpuMI	RGGWCCY	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	76, 272
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	403
RsaNI	GTAC	1 cut(s)	402
RseI	CAYNNNNRTG	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	93, 123
SatI	GCNGC	2 cut(s)	138, 376
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	76, 272
SetI	ASST	7 cut(s)	81, 234, 252, 264, 270, 383, 393
SfaNI	GCATC	2 cut(s)	40, 95
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	409
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	29
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	147
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	401
TauI	GCSGC	1 cut(s)	378
Tru1I	TTAA	2 cut(s)	93, 123
Tru9I	TTAA	2 cut(s)	93, 123
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	4 cut(s)	50, 71, 219, 278
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	76
XapI	RAATTY	1 cut(s)	128
XspI	CTAG	1 cut(s)	83
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.