Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003974

Physical Location & Seq

Genomic Coordinates Forward (+)

14769586 .. 14772226

Gene Structure 2641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G013650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGGGCGCTTCTAGCAAGGGTGCTGGGGTTTTTTAAGTGGAAGGAGCAGGGTAGCATGACAAGGCTTCAGAAGAGTTTCGGGTATGTGACTGGAGAACAGGTTAAGGAGCTTGGAGACCAGGTTGAGGGTGGAGCGGGGCTAGATAAGAGCTTTGGGTTCTCAAAGAATTTGATTAAAATGTATGAGCTTGGAAGTATGGGTGGGTTCGGGCATTTTTCCTACACTTGCATAGCTACTTTTAAGAAGGGAAAGCTTGAGGGCCACCATGCTGCTGTCAAGGTCATCTCCAAAGCAAAGATGGCTACTGCTATTGCCAATGATGATGTGAGAAGGGAAGCAAAGATATTGAGGGCTTTGAAAGGACATAACAATATATGGCTGCTAGATATGAATGAATGCATCTTGAATCCACTTGAGGGACTAGGAAGCAAGAACTTCATGGGTGGGAAATACCCCGAGGATGATGCCAGGACCGTCATGATACAAATATTAAGTGTTGTGGCGTTTTGCCACCTCCAGTGTGTGGTTCATAGGGATCTTAAACCTGAGGCTCTCTCCAAGACATTGACTCCGGATGACCTTTCTTATATGGAGGAGCAGTTTGAACAACTGGAACCAGACGGCAGTGGCACAATAGGCTTAGAAAATATTAAAACGGCCTTGATGAAAAATGCAACTGATGCAATGAAAGAGGGACGATATGAGGATCTTCTAGCATCAGTAGGTGCCTTGACTATGGTTGTGCAGTTGATTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0071944 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

253

Amino Acids

27.94

Weight (kDa)

7.01

Isoelectric Point (pI)

28.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	85 - 184	3e-11	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003974)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50530 AT3G50530
fragaria_vesca	FvH4_1g15620 FvH4_1g15620
malus_domestica	MD02G1168300.v1.1 MD15G1280600.v1.1
prunus_persica	Prupe.7G136700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104821 RchiOBHm_Chr2g0104961
rosa_laevigata	RLG00000017360 RLG00000017361 RLG00000017379
rosa_multiflora	Rmu_co8294349.1_g000001 Rmu_sc0001247.1_g000003 Rmu_sc0002645.1_g000007
rosa_roxburghii	Rroxscaffold_2G00138620 Rroxscaffold_2G00138750 Rroxscaffold_2G00138760
rosa_rugosa	Rorug02G0123300 Rorug02G0124100
rosa_samantha	Rh2AG173300 Rh2AG173400 Rh2AG174900 Rh2BG181000 Rh2BG182700 Rh2BG182800 Rh2CG178300 Rh2CG179400 Rh2DG179500 Rh2DG179600 Rh2DG181300
rosa_wichuraiana	Rw2G013650 Rw2G013750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	728
AccB7I	CCANNNNNTGG	1 cut(s)	526
AccBSI	CCGCTC	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	574
AciI	CCGC	1 cut(s)	137
AclWI	GGATC	2 cut(s)	546, 717
AcsI	RAATTY	1 cut(s)	169
AcuI	CTGAAG	1 cut(s)	53
AfiI	CCNNNNNNNGG	3 cut(s)	127, 419, 526
AgsI	TTSAA	3 cut(s)	361, 409, 608
AjnI	CCWGG	2 cut(s)	120, 470
AluBI	AGCT	5 cut(s)	112, 153, 190, 236, 256
AluI	AGCT	5 cut(s)	112, 153, 190, 236, 256
Alw26I	GTCTC	1 cut(s)	111
AlwI	GGATC	2 cut(s)	546, 717
Ama87I	CYCGRG	1 cut(s)	458
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	2 cut(s)	262, 660
ApeKI	GCWGC	2 cut(s)	272, 382
ApoI	RAATTY	1 cut(s)	169
Asp700I	GAANNNNTTC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	262, 474
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	474
AxyI	CCTNAGG	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	259, 369
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	2 cut(s)	640, 675
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciT130I	CCWGG	2 cut(s)	122, 472
BcoDI	GTCTC	1 cut(s)	111
BfaI	CTAG	6 cut(s)	14, 143, 386, 425, 716, 760
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	2 cut(s)	273, 383
BlsI	GCNGC	2 cut(s)	274, 384
Bme1390I	CCNGG	2 cut(s)	122, 472
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	262, 474
BmiI	GGNNCC	2 cut(s)	618, 730
BmrFI	CCNGG	2 cut(s)	122, 472
BmsI	GCATC	4 cut(s)	411, 457, 673, 728
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpmI	CTGGAG	2 cut(s)	114, 503
BpuEI	CTTGAG	2 cut(s)	278, 437
BsaI	GGTCTC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	459
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	8 cut(s)	87, 108, 117, 138, 556, 586, 587, 617
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 419, 526
Bse1I	ACTGG	3 cut(s)	97, 520, 618
Bse21I	CCTNAGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	574
BseBI	CCWGG	2 cut(s)	122, 472
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	2 cut(s)	469, 583
BseLI	CCNNNNNNNGG	3 cut(s)	127, 419, 526
BseMI	GCAATG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	540
BseNI	ACTGG	3 cut(s)	97, 520, 618
BseRI	GAGGAG	1 cut(s)	611
BseXI	GCAGC	2 cut(s)	259, 369
BseYI	CCCAGC	1 cut(s)	25
BshFI	GGCC	2 cut(s)	264, 662
BshNI	GGYRCC	1 cut(s)	728
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	435, 711
BslI	CCNNNNNNNGG	3 cut(s)	127, 419, 526
BsmAI	GTCTC	1 cut(s)	111
BsmFI	GGGAC	2 cut(s)	435, 711
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	264, 662
Bso31I	GGTCTC	1 cut(s)	111
BsoBI	CYCGRG	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	538, 709
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	264, 662
BspCNI	CTCAG	1 cut(s)	541
BspEI	TCCGGA	1 cut(s)	574
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	618, 730
BspPI	GGATC	2 cut(s)	546, 717
BspT107I	GGYRCC	1 cut(s)	728
BspTNI	GGTCTC	1 cut(s)	111
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	693
BsrI	ACTGG	3 cut(s)	97, 520, 618
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	538, 709
Bst2UI	CCWGG	2 cut(s)	122, 472
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	683
BstDEI	CTNAG	2 cut(s)	549, 643
BstF5I	GGATG	2 cut(s)	469, 583
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	541, 712
BstMAI	GTCTC	1 cut(s)	111
BstMBI	GATC	2 cut(s)	538, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 302, 639, 683
BstNI	CCWGG	2 cut(s)	122, 472
BstSCI	CCNGG	2 cut(s)	120, 470
BstV1I	GCAGC	2 cut(s)	259, 369
BstX2I	RGATCY	2 cut(s)	538, 709
BstYI	RGATCY	2 cut(s)	538, 709
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	2 cut(s)	264, 662
BtsCI	GGATG	2 cut(s)	469, 583
BtsI	GCAGTG	1 cut(s)	634
BtsIMutI	CAGTG	2 cut(s)	527, 634
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	262, 474
CsiI	ACCWGGT	1 cut(s)	120
CviAII	CATG	4 cut(s)	58, 269, 442, 481
DdeI	CTNAG	2 cut(s)	549, 643
DpnI	GATC	2 cut(s)	540, 711
DpnII	GATC	2 cut(s)	538, 709
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	474
Eco57I	CTGAAG	1 cut(s)	53
Eco81I	CCTNAGG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	120, 470
EcoT22I	ATGCAT	1 cut(s)	404
FaeI	CATG	4 cut(s)	61, 272, 445, 484
FaqI	GGGAC	2 cut(s)	435, 711
FatI	CATG	4 cut(s)	57, 268, 441, 480
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	2 cut(s)	273, 383
FokI	GGATG	2 cut(s)	476, 590
Fsp4HI	GCNGC	2 cut(s)	273, 383
FspBI	CTAG	6 cut(s)	14, 143, 386, 425, 716, 760
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	2 cut(s)	273, 383
GsaI	CCCAGC	1 cut(s)	29
GsuI	CTGGAG	2 cut(s)	114, 503
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	2 cut(s)	264, 662
HapII	CCGG	1 cut(s)	575
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	4 cut(s)	61, 272, 445, 484
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	409, 571
HpaII	CCGG	1 cut(s)	575
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	406, 481, 575
HpyAV	CCTTC	3 cut(s)	37, 241, 327
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	5 cut(s)	231, 402, 677, 686, 748
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 302, 639, 683
HpyF3I	CTNAG	2 cut(s)	549, 643
Hsp92II	CATG	4 cut(s)	61, 272, 445, 484
HspAI	GCGC	1 cut(s)	8
Kpn2I	TCCGGA	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	538, 709
LmnI	GCTCC	4 cut(s)	46, 109, 134, 598
Lsp1109I	GCAGC	2 cut(s)	259, 369
LweI	GCATC	4 cut(s)	411, 457, 673, 728
MabI	ACCWGGT	1 cut(s)	120
MaeI	CTAG	6 cut(s)	14, 143, 386, 425, 716, 760
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	2 cut(s)	540, 711
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	538, 709
MboII	GAAGA	2 cut(s)	85, 704
MflI	RGATCY	2 cut(s)	538, 709
MluCI	AATT	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	565
Mph1103I	ATGCAT	1 cut(s)	404
MroI	TCCGGA	1 cut(s)	574
MroXI	GAANNNNTTC	1 cut(s)	77
MseI	TTAA	8 cut(s)	36, 105, 177, 243, 494, 543, 654, 756
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	122, 472
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	122, 472
MwoI	GCNNNNNNNGC	4 cut(s)	14, 302, 639, 683
NdeII	GATC	2 cut(s)	538, 709
NlaIII	CATG	4 cut(s)	61, 272, 445, 484
NlaIV	GGNNCC	2 cut(s)	618, 730
NmuCI	GTSAC	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	404
PagI	TCATGA	1 cut(s)	480
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	409
PflMI	CCANNNNNTGG	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	274, 384
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	2 cut(s)	120, 470
PspFI	CCCAGC	1 cut(s)	25
PspGI	CCWGG	2 cut(s)	120, 470
PspN4I	GGNNCC	2 cut(s)	618, 730
PspPI	GGNCC	2 cut(s)	262, 474
PsuI	RGATCY	2 cut(s)	538, 709
SaqAI	TTAA	8 cut(s)	36, 105, 177, 243, 494, 543, 654, 756
SatI	GCNGC	2 cut(s)	273, 383
Sau3AI	GATC	2 cut(s)	538, 709
Sau96I	GGNCC	2 cut(s)	262, 474
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	2 cut(s)	122, 472
SexAI	ACCWGGT	1 cut(s)	120
SfaNI	GCATC	4 cut(s)	411, 457, 673, 728
SinI	GGWCC	1 cut(s)	474
SmlI	CTYRAG	2 cut(s)	257, 416
SmoI	CTYRAG	2 cut(s)	257, 416
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	2 cut(s)	492, 652
SspMI	CTAG	6 cut(s)	14, 143, 386, 425, 716, 760
StyD4I	CCNGG	2 cut(s)	120, 470
TaaI	ACNGT	1 cut(s)	478
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	409
Tru1I	TTAA	8 cut(s)	36, 105, 177, 243, 494, 543, 654, 756
Tru9I	TTAA	8 cut(s)	36, 105, 177, 243, 494, 543, 654, 756
TscAI	CASTG	2 cut(s)	527, 634
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	272, 382
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	6 cut(s)	407, 411, 430, 521, 683, 704
TspRI	CASTG	2 cut(s)	527, 634
Van91I	CCANNNNNTGG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	169
XcmI	CCANNNNNNNNNTGG	2 cut(s)	128, 298
XmnI	GAANNNNTTC	1 cut(s)	77
XspI	CTAG	6 cut(s)	14, 143, 386, 425, 716, 760
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.