AT3G51370

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002066
Physical Location & Seq
Forward (+)
19069127 .. 19072231
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51370.1

Sequence Viewer

Length: 1140 bp
ATGTTATCAACGTTAATGAAACTCTTGAGTGCTTGTCTGTGGCCGTCTTCTTCCTCGGGCAAGTCCTCTGATTCAACTGGAAAACAAGATGGATTGCTTTGGTACAAAGACTTTGGTCAGCACCTCGTTGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACAACTTGCTTGAGGATCAGAGCCAAGTTGAGTCTGGGCCTTTGAGTACTCTTGACTCTGGTCCTTATGGAACTTTTATTGGAATCTATGATGGCCATGGCGGGCCTGAGACGTCGCGATTTGTTAATGATCACCTTTTTCAGCATCTAAAGAGATTTGCTGCAGAGCAGGCCTCTATGTCGGTGGATGTAATTAAAAAGGCGTATGAGGCGACAGAAGAAGGTTTTTTAGGGGTTGTGACAAAGCAGTGGCCAACTAAGCCACAGATTGCAGCGGTTGGGTCTTGCTGCTTGGTGGGTGTTATATGCGGAGGGATGCTTTACATAGCTAATGTTGGGGATTCCCGTGCAGTTCTTGGAAGGGCTATGAAGGCGACAGGTGAGGTTATTGCCCTTCAGCTCTCTGCTGAACATAATGTGAGTATAGAGTCTGTTAGACAGGAGATGCACTCCTTGCACCCAGATGACTCGCATATTGTCATGTTAAAGCACAATGTGTGGCGTGTTAAGGGCCTTATTCAGATATCTAGATCCATAGGCGACGTGTATCTTAAAAAGGCAGAGTTCAACAAGGAACCATTGTACACAAAGTATAGAATCCGTGAACCGTTCAAAAGACCTATCTTGAGTGGGGAACCAACGATAACGGAGCATGAGATCCAACCACAAGATAAGTTTCTAATATTCGCTTCTGATGGACTATGGGAACAGATGAGCAACCAAGAAGCTGTTGACATCGTTCAGAACCACCCACGAAACGGGATTGCACGGAGACTGGTGAAGATGGCACTGCAAGAGGCGGCAAAGAAACGAGAGATGAGATATTCTGATCTAAAGAAGATAGAGAGAGGTGTGAGGAGACATTTCCACGATGACATAACTGTGGTCATAATCTTCCTTGATACCAATCAGGTGAGCTCTGTGAAAGGACCCCCACTCTCTATCCGAGGCGGTGGTATGACATTCCCCAAGAAAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

379

Amino Acids

42.18

Weight (kDa)

8.51

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 78 - 322 1.2e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 275
AccII CGCG 1 cut(s) 277
AciI CCGC 5 cut(s) 261, 434, 468, 959, 1110
AclI AACGTT 1 cut(s) 11
AclWI GGATC 3 cut(s) 183, 684, 811
AcoI YGGCCR 3 cut(s) 41, 253, 410
AcsI RAATTY 1 cut(s) 134
AcuI CTGAAG 1 cut(s) 539
AcyI GRCGYC 1 cut(s) 272
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 3 cut(s) 104, 208, 743
AfiI CCNNNNNNNGG 1 cut(s) 917
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 4 cut(s) 75, 155, 727, 772
AjiI CACGTC 1 cut(s) 703
AluBI AGCT 4 cut(s) 488, 559, 887, 1077
AluI AGCT 4 cut(s) 488, 559, 887, 1077
Alw21I GWGCWC 1 cut(s) 1079
Alw26I GTCTC 3 cut(s) 263, 925, 1012
AlwI GGATC 3 cut(s) 183, 684, 811
Ama87I CYCGRG 1 cut(s) 55
AoxI GGCC 7 cut(s) 41, 197, 253, 263, 330, 410, 670
ApeKI GCWGC 3 cut(s) 320, 431, 447
ApoI RAATTY 1 cut(s) 134
AspS9I GGNCC 5 cut(s) 197, 221, 263, 670, 1088
AsuHPI GGTGA 5 cut(s) 143, 284, 551, 949, 1084
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 2 cut(s) 221, 1088
BalI TGGCCA 2 cut(s) 255, 412
BanII GRGCYC 1 cut(s) 1079
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 1079
BbvI GCAGC 3 cut(s) 307, 434, 443
BccI CCATC 4 cut(s) 83, 245, 848, 937
BceAI ACGGC 1 cut(s) 28
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 3 cut(s) 263, 925, 1012
BfaI CTAG 1 cut(s) 687
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 4 cut(s) 321, 432, 448, 960
BlsI GCNGC 4 cut(s) 322, 433, 449, 961
BmcAI AGTACT 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 221, 1088
BmeT110I CYCGRG 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 5 cut(s) 197, 221, 263, 670, 1088
BmiI GGNNCC 3 cut(s) 735, 795, 1090
BmsI GCATC 3 cut(s) 313, 465, 594
BoxI GACNNNNGTC 2 cut(s) 114, 219
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 4 cut(s) 317, 349, 593, 625
BpuEI CTTGAG 3 cut(s) 46, 191, 805
BsaBI GATNNNNATC 1 cut(s) 1065
BsaHI GRCGYC 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 54, 141, 256, 1105
Bsc4I CCNNNNNNNGG 1 cut(s) 917
Bse1I ACTGG 2 cut(s) 82, 939
Bse8I GATNNNNATC 1 cut(s) 1065
BseDI CCNNGG 4 cut(s) 54, 141, 256, 1105
BseGI GGATG 2 cut(s) 352, 480
BseJI GATNNNNATC 1 cut(s) 1065
BseLI CCNNNNNNNGG 1 cut(s) 917
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 82, 939
BseRI GAGGAG 1 cut(s) 1030
BseXI GCAGC 3 cut(s) 307, 434, 443
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 277
BshFI GGCC 7 cut(s) 43, 199, 255, 265, 332, 412, 672
BsiHKAI GWGCWC 1 cut(s) 1079
BsiHKCI CYCGRG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 917
BsmAI GTCTC 3 cut(s) 263, 925, 1012
BsmBI CGTCTC 1 cut(s) 263
BsnI GGCC 7 cut(s) 43, 199, 255, 265, 332, 412, 672
BsoBI CYCGRG 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 1079
Bsp1407I TGTACA 1 cut(s) 741
Bsp143I GATC 5 cut(s) 175, 289, 689, 816, 988
Bsp19I CCATGG 2 cut(s) 141, 256
Bsp68I TCGCGA 1 cut(s) 277
BspACI CCGC 5 cut(s) 261, 434, 468, 959, 1110
BspANI GGCC 7 cut(s) 43, 199, 255, 265, 332, 412, 672
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 277
BspLI GGNNCC 3 cut(s) 735, 795, 1090
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 183, 684, 811
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 2 cut(s) 82, 939
BssECI CCNNGG 4 cut(s) 54, 141, 256, 1105
BssMI GATC 5 cut(s) 175, 289, 689, 816, 988
BssNI GRCGYC 1 cut(s) 272
BssT1I CCWWGG 2 cut(s) 141, 256
Bst4CI ACNGT 2 cut(s) 768, 1042
BstACI GRCGYC 1 cut(s) 272
BstAPI GCANNNNNTGC 1 cut(s) 613
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 2 cut(s) 263, 330
BstDEI CTNAG 2 cut(s) 267, 417
BstDSI CCRYGG 2 cut(s) 141, 256
BstF5I GGATG 2 cut(s) 352, 480
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 5 cut(s) 178, 292, 692, 819, 991
BstMAI GTCTC 3 cut(s) 263, 925, 1012
BstMBI GATC 5 cut(s) 175, 289, 689, 816, 988
BstMWI GCNNNNNNNGC 5 cut(s) 329, 368, 418, 530, 613
BstPAI GACNNNNGTC 2 cut(s) 114, 219
BstSFI CTRYAG 1 cut(s) 321
BstUI CGCG 1 cut(s) 277
BstV1I GCAGC 3 cut(s) 307, 434, 443
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 2 cut(s) 689, 816
BstYI RGATCY 2 cut(s) 689, 816
BsuRI GGCC 7 cut(s) 43, 199, 255, 265, 332, 412, 672
BtgI CCRYGG 2 cut(s) 141, 256
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 2 cut(s) 352, 480
BtsI GCAGTG 2 cut(s) 413, 947
BtsIMutI CAGTG 2 cut(s) 413, 947
BtuMI TCGCGA 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 263, 330
Cfr13I GGNCC 5 cut(s) 197, 221, 263, 670, 1088
Csp6I GTAC 3 cut(s) 103, 207, 742
CviAII CATG 4 cut(s) 142, 257, 640, 812
CviQI GTAC 3 cut(s) 103, 207, 742
DdeI CTNAG 2 cut(s) 267, 417
DpnI GATC 5 cut(s) 177, 291, 691, 818, 990
DpnII GATC 5 cut(s) 175, 289, 689, 816, 988
DraIII CACNNNGTG 1 cut(s) 655
EaeI YGGCCR 3 cut(s) 41, 253, 410
Ecl136II GAGCTC 1 cut(s) 1077
Eco130I CCWWGG 2 cut(s) 141, 256
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 1079
Eco32I GATATC 1 cut(s) 684
Eco47I GGWCC 2 cut(s) 221, 1088
Eco53kI GAGCTC 1 cut(s) 1077
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 1 cut(s) 55
EcoICRI GAGCTC 1 cut(s) 1077
EcoO109I RGGNCCY 2 cut(s) 670, 1088
EcoRI GAATTC 1 cut(s) 134
EcoRV GATATC 1 cut(s) 684
EcoT14I CCWWGG 2 cut(s) 141, 256
EcoT38I GRGCYC 1 cut(s) 1079
ErhI CCWWGG 2 cut(s) 141, 256
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 4 cut(s) 145, 260, 643, 815
FatI CATG 4 cut(s) 141, 256, 639, 811
FauI CCCGC 1 cut(s) 254
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 4 cut(s) 321, 432, 448, 960
FokI GGATG 2 cut(s) 359, 487
FriOI GRGCYC 1 cut(s) 1079
Fsp4HI GCNGC 4 cut(s) 321, 432, 448, 960
FspBI CTAG 1 cut(s) 687
GluI GCNGC 4 cut(s) 321, 432, 448, 960
HaeIII GGCC 7 cut(s) 43, 199, 255, 265, 332, 412, 672
Hin1I GRCGYC 1 cut(s) 272
Hin1II CATG 4 cut(s) 145, 260, 643, 815
HincII GTYRAC 1 cut(s) 892
HindII GTYRAC 1 cut(s) 892
HinfI GANTC 8 cut(s) 71, 191, 215, 243, 500, 587, 626, 756
HphI GGTGA 5 cut(s) 143, 284, 551, 949, 1084
Hpy166II GTNNAC 3 cut(s) 744, 764, 892
Hpy188I TCNGA 7 cut(s) 70, 180, 681, 853, 903, 988, 1106
Hpy188III TCNNGA 5 cut(s) 25, 212, 276, 687, 784
Hpy8I GTNNAC 3 cut(s) 744, 764, 892
Hpy99I CGWCG 2 cut(s) 277, 704
HpyAV CCTTC 4 cut(s) 374, 513, 523, 563
HpyCH4III ACNGT 2 cut(s) 768, 1042
HpyCH4IV ACGT 3 cut(s) 11, 272, 702
HpyCH4V TGCA 7 cut(s) 323, 431, 509, 607, 616, 926, 952
HpyF10VI GCNNNNNNNGC 5 cut(s) 329, 368, 418, 530, 613
HpyF3I CTNAG 2 cut(s) 267, 417
HpySE526I ACGT 3 cut(s) 11, 272, 702
Hsp92I GRCGYC 1 cut(s) 272
Hsp92II CATG 4 cut(s) 145, 260, 643, 815
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 5 cut(s) 175, 289, 689, 816, 988
LmnI GCTCC 1 cut(s) 808
Lsp1109I GCAGC 3 cut(s) 307, 434, 443
LweI GCATC 3 cut(s) 313, 465, 594
MaeI CTAG 1 cut(s) 687
MaeII ACGT 3 cut(s) 11, 272, 702
MaeIII GTNAC 1 cut(s) 397
MalI GATC 5 cut(s) 177, 291, 691, 818, 990
MboI GATC 5 cut(s) 175, 289, 689, 816, 988
MboII GAAGA 6 cut(s) 39, 42, 389, 952, 1009, 1045
MflI RGATCY 2 cut(s) 689, 816
MhlI GDGCHC 1 cut(s) 1079
MlsI TGGCCA 2 cut(s) 255, 412
MluCI AATT 2 cut(s) 134, 351
MluNI TGGCCA 2 cut(s) 255, 412
MlyI GAGTC 4 cut(s) 200, 209, 596, 620
MmeI TCCRAC 1 cut(s) 844
Mox20I TGGCCA 2 cut(s) 255, 412
MscI TGGCCA 2 cut(s) 255, 412
MseI TTAA 6 cut(s) 14, 285, 354, 644, 666, 711
MslI CAYNNNNRTG 2 cut(s) 621, 1040
Msp20I TGGCCA 2 cut(s) 255, 412
MspA1I CMGCKG 1 cut(s) 434
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 5 cut(s) 329, 368, 418, 530, 613
NcoI CCATGG 2 cut(s) 141, 256
NdeII GATC 5 cut(s) 175, 289, 689, 816, 988
NlaIII CATG 4 cut(s) 145, 260, 643, 815
NlaIV GGNNCC 3 cut(s) 735, 795, 1090
NmuCI GTSAC 1 cut(s) 397
NruI TCGCGA 1 cut(s) 277
PceI AGGCCT 1 cut(s) 332
PfeI GAWTC 4 cut(s) 71, 243, 500, 756
PkrI GCNGC 4 cut(s) 322, 433, 449, 961
PleI GAGTC 4 cut(s) 199, 209, 595, 620
PpsI GAGTC 4 cut(s) 199, 209, 595, 620
PpuMI RGGWCCY 1 cut(s) 1088
PshAI GACNNNNGTC 2 cut(s) 114, 219
Psp124BI GAGCTC 1 cut(s) 1079
Psp1406I AACGTT 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 1088
PspN4I GGNNCC 3 cut(s) 735, 795, 1090
PspPI GGNCC 5 cut(s) 197, 221, 263, 670, 1088
PspPPI RGGWCCY 1 cut(s) 1088
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 689, 816
RruI TCGCGA 1 cut(s) 277
RsaI GTAC 3 cut(s) 104, 208, 743
RsaNI GTAC 3 cut(s) 103, 207, 742
RseI CAYNNNNRTG 2 cut(s) 621, 1040
SacI GAGCTC 1 cut(s) 1079
SaqAI TTAA 6 cut(s) 14, 285, 354, 644, 666, 711
SatI GCNGC 4 cut(s) 321, 432, 448, 960
Sau3AI GATC 5 cut(s) 175, 289, 689, 816, 988
Sau96I GGNCC 5 cut(s) 197, 221, 263, 670, 1088
ScaI AGTACT 1 cut(s) 208
SchI GAGTC 4 cut(s) 200, 209, 596, 620
SduI GDGCHC 1 cut(s) 1079
SfaNI GCATC 3 cut(s) 313, 465, 594
SfcI CTRYAG 1 cut(s) 321
SinI GGWCC 2 cut(s) 221, 1088
SmiMI CAYNNNNRTG 2 cut(s) 621, 1040
SmlI CTYRAG 3 cut(s) 25, 170, 784
SmoI CTYRAG 3 cut(s) 25, 170, 784
Sse9I AATT 2 cut(s) 134, 351
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 5 cut(s) 261, 434, 468, 959, 1110
SspI AATATT 1 cut(s) 843
SspMI CTAG 1 cut(s) 687
SstI GAGCTC 1 cut(s) 1079
StuI AGGCCT 1 cut(s) 332
StyI CCWWGG 2 cut(s) 141, 256
TaaI ACNGT 2 cut(s) 768, 1042
TaiI ACGT 3 cut(s) 14, 275, 705
TasI AATT 2 cut(s) 134, 351
TatI WGTACW 2 cut(s) 206, 741
TauI GCSGC 1 cut(s) 962
TfiI GAWTC 4 cut(s) 71, 243, 500, 756
Tru1I TTAA 6 cut(s) 14, 285, 354, 644, 666, 711
Tru9I TTAA 6 cut(s) 14, 285, 354, 644, 666, 711
TscAI CASTG 2 cut(s) 413, 954
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 3 cut(s) 320, 431, 447
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 32, 542
TspGWI ACGGA 3 cut(s) 749, 821, 943
TspRI CASTG 2 cut(s) 413, 954
VpaK11BI GGWCC 2 cut(s) 221, 1088
XapI RAATTY 1 cut(s) 134
XbaI TCTAGA 1 cut(s) 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XspI CTAG 1 cut(s) 687
ZraI GACGTC 1 cut(s) 273
ZrmI AGTACT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.