Rorug06G0118600

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0002066
Physical Location & Seq
Reverse (-)
16270374 .. 16271330
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0118600.1

Sequence Viewer

Length: 957 bp
ATGGGGTTTCGTGACCTCAGAAAGTTTAATACCTCTCTTCTCACTGAGCAGTGTTGGAGAATTTTGAAAAATCCTCAAGCTCTTTGGGTTCGCATTCTCAAGGCTAGATACTTTCCTAACTCTTCTTTTCTTAAAGCTAAGAAGGGGGGTAGAGCGTCATGGGGTTGGAGTAGCATCCTAGCGGGAAGGGAAACTGTGGAGGTGAACATGCGTTGGCAAGTGAATGATGGCAGAACCATTGATGTGTGGAAAGATAGGTGGATCCCCAACTCCTTGGATGGGCTCATTCATCCCACTGATACCAGAAACCGCTTTACTCCTCTTGCGGTTTCAGAGATTATTGATTGGGACACAAGAAACTGGAACATCAGCCACATTGAACCTTTCCTTAATGATTCTGATGCTAAAGCTATCAAGGCAATGCCAATAGGTGACCCAAATGAAGACGACAGACTGATTTGGCCGTTGACAAGGGATGGTGACTTCTCTGTTCGTTCATGTTATCATTGCATTCCACAGCAATGCATCAAGTCTGTTCCTATGAAAGCTTCTACTTCCCACATTAGACCCCCAAAGATTTGGCATTGGATCTGGCACTCTAAATTCCCTCCCAAAGTGTCCAATTTTCTTTGGCGAGCCATTACCAACTATGTTCCTTCTTTTTACAATCTGTTCAAAAGGAAAGTAAGAAAATCTCCTATGTGCTCAATCTGTGGGGAATATGAGGAATCTGTTGAACATTGTCTTCTTCTTTGTCCATGGACTGAGTTGGTGTGGTTTGGTAGCAGATTGGGAATGAAGATTGTTAAGGATGAGATCGATTACCACCTTGGATACTTGGTTGGTAAACACTGTCAGAAAGCTTTCAGATCGTATTGGGAGGATCGATTGGACCTTCACATACTTGGGGTTCTTAATGTGGGAAATATGGAAGTCGAGATGTTCGGCTACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

318

Amino Acids

37.44

Weight (kDa)

9.15

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 162 - 259 2.2e-16 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 182, 310, 326
AclWI GGATC 4 cut(s) 256, 269, 596, 891
AcoI YGGCCR 1 cut(s) 461
AcsI RAATTY 2 cut(s) 60, 602
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 4 cut(s) 67, 380, 676, 737
AluBI AGCT 5 cut(s) 80, 137, 410, 548, 863
AluI AGCT 5 cut(s) 80, 137, 410, 548, 863
Alw21I GWGCWC 1 cut(s) 707
AlwI GGATC 4 cut(s) 256, 269, 596, 891
AoxI GGCC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 60, 602
Asp700I GAANNNNTTC 1 cut(s) 863
AspS9I GGNCC 1 cut(s) 892
AsuHPI GGTGA 3 cut(s) 214, 443, 491
AvaII GGWCC 1 cut(s) 892
BamHI GGATCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 450, 737
Bbv12I GWGCWC 1 cut(s) 707
BccI CCATC 3 cut(s) 221, 272, 470
BceAI ACGGC 1 cut(s) 448
BciVI GTATCC 1 cut(s) 827
BfaI CTAG 2 cut(s) 105, 179
BfuI GTATCC 1 cut(s) 827
Bme18I GGWCC 1 cut(s) 892
BmgT120I GGNCC 1 cut(s) 892
BmiI GGNNCC 1 cut(s) 263
BmsI GCATC 3 cut(s) 183, 391, 534
BpiI GAAGAC 2 cut(s) 450, 737
BpuEI CTTGAG 2 cut(s) 60, 83
Bsa29I ATCGAT 2 cut(s) 819, 886
BsaJI CCNNGG 3 cut(s) 273, 758, 829
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 1 cut(s) 365
Bse3DI GCAATG 3 cut(s) 426, 505, 527
BseCI ATCGAT 2 cut(s) 819, 886
BseDI CCNNGG 3 cut(s) 273, 758, 829
BseGI GGATG 5 cut(s) 174, 283, 289, 481, 817
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 3 cut(s) 426, 505, 527
BseMII CTCAG 3 cut(s) 31, 36, 756
BseNI ACTGG 1 cut(s) 365
BseRI GAGGAG 1 cut(s) 309
BshFI GGCC 1 cut(s) 463
BshVI ATCGAT 2 cut(s) 819, 886
BsiHKAI GWGCWC 1 cut(s) 707
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 1 cut(s) 279
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 2 cut(s) 93, 510
BsnI GGCC 1 cut(s) 463
Bsp1286I GDGCHC 2 cut(s) 285, 707
Bsp143I GATC 5 cut(s) 261, 588, 816, 869, 883
Bsp19I CCATGG 1 cut(s) 758
BspACI CCGC 3 cut(s) 182, 310, 326
BspANI GGCC 1 cut(s) 463
BspCNI CTCAG 3 cut(s) 30, 37, 757
BspDI ATCGAT 2 cut(s) 819, 886
BspLI GGNNCC 1 cut(s) 263
BspPI GGATC 4 cut(s) 256, 269, 596, 891
BsrDI GCAATG 3 cut(s) 426, 505, 527
BsrI ACTGG 1 cut(s) 365
BssECI CCNNGG 3 cut(s) 273, 758, 829
BssMI GATC 5 cut(s) 261, 588, 816, 869, 883
BssT1I CCWWGG 3 cut(s) 273, 758, 829
Bst4CI ACNGT 2 cut(s) 196, 854
Bst6I CTCTTC 2 cut(s) 42, 127
BstC8I GCNNGC 1 cut(s) 636
BstDEI CTNAG 4 cut(s) 17, 45, 138, 765
BstDSI CCRYGG 1 cut(s) 758
BstEII GGTNACC 1 cut(s) 431
BstF5I GGATG 5 cut(s) 174, 283, 289, 481, 817
BstKTI GATC 5 cut(s) 264, 591, 819, 872, 886
BstMBI GATC 5 cut(s) 261, 588, 816, 869, 883
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 211
BstPI GGTNACC 1 cut(s) 431
BstV2I GAAGAC 2 cut(s) 450, 737
BstX2I RGATCY 2 cut(s) 261, 588
BstXI CCANNNNNNTGG 2 cut(s) 274, 579
BstYI RGATCY 2 cut(s) 261, 588
Bsu15I ATCGAT 2 cut(s) 819, 886
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 1 cut(s) 463
BsuTUI ATCGAT 2 cut(s) 819, 886
BtgI CCRYGG 1 cut(s) 758
BtsCI GGATG 5 cut(s) 174, 283, 289, 481, 817
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 4 cut(s) 42, 56, 294, 850
Cac8I GCNNGC 1 cut(s) 636
Cfr13I GGNCC 1 cut(s) 892
ClaI ATCGAT 2 cut(s) 819, 886
CseI GACGC 1 cut(s) 144
CviAII CATG 4 cut(s) 159, 208, 498, 759
DdeI CTNAG 4 cut(s) 17, 45, 138, 765
DpnI GATC 5 cut(s) 263, 590, 818, 871, 885
DpnII GATC 5 cut(s) 261, 588, 816, 869, 883
EaeI YGGCCR 1 cut(s) 461
Eam1104I CTCTTC 2 cut(s) 42, 127
EarI CTCTTC 2 cut(s) 42, 127
Eco130I CCWWGG 3 cut(s) 273, 758, 829
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 892
Eco91I GGTNACC 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 431
EcoT14I CCWWGG 3 cut(s) 273, 758, 829
EcoT22I ATGCAT 1 cut(s) 527
EcoT38I GRGCYC 1 cut(s) 285
ErhI CCWWGG 3 cut(s) 273, 758, 829
FaeI CATG 4 cut(s) 162, 211, 501, 762
FaqI GGGAC 1 cut(s) 362
FatI CATG 4 cut(s) 158, 207, 497, 758
FauI CCCGC 1 cut(s) 175
FokI GGATG 5 cut(s) 161, 276, 290, 488, 824
FriOI GRGCYC 1 cut(s) 285
FspBI CTAG 2 cut(s) 105, 179
HaeIII GGCC 1 cut(s) 463
HgaI GACGC 1 cut(s) 144
Hin1II CATG 4 cut(s) 162, 211, 501, 762
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HindIII AAGCTT 2 cut(s) 546, 861
HinfI GANTC 2 cut(s) 395, 728
HphI GGTGA 3 cut(s) 214, 443, 491
Hpy166II GTNNAC 3 cut(s) 205, 468, 848
Hpy188I TCNGA 5 cut(s) 20, 334, 400, 858, 869
Hpy188III TCNNGA 2 cut(s) 11, 937
Hpy8I GTNNAC 3 cut(s) 205, 468, 848
HpyAV CCTTC 4 cut(s) 136, 180, 666, 905
HpyCH4III ACNGT 2 cut(s) 196, 854
HpyCH4V TGCA 2 cut(s) 510, 525
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 4 cut(s) 17, 45, 138, 765
Hsp92II CATG 4 cut(s) 162, 211, 501, 762
Kzo9I GATC 5 cut(s) 261, 588, 816, 869, 883
LpnPI CCDG 3 cut(s) 316, 346, 577
LweI GCATC 3 cut(s) 183, 391, 534
MaeI CTAG 2 cut(s) 105, 179
MaeIII GTNAC 3 cut(s) 11, 431, 479
MalI GATC 5 cut(s) 263, 590, 818, 871, 885
MboI GATC 5 cut(s) 261, 588, 816, 869, 883
MboII GAAGA 6 cut(s) 29, 114, 455, 737, 740, 811
MflI RGATCY 2 cut(s) 261, 588
MhlI GDGCHC 2 cut(s) 285, 707
MluCI AATT 3 cut(s) 60, 602, 622
MmeI TCCRAC 2 cut(s) 35, 146
MnlI CCTC 8 cut(s) 26, 43, 84, 193, 330, 618, 718, 874
Mph1103I ATGCAT 1 cut(s) 527
MroXI GAANNNNTTC 1 cut(s) 863
MseI TTAA 6 cut(s) 27, 132, 390, 807, 915, 955
MslI CAYNNNNRTG 2 cut(s) 242, 520
Mva1269I GAATGC 2 cut(s) 93, 510
MwoI GCNNNNNNNGC 1 cut(s) 416
NcoI CCATGG 1 cut(s) 758
NdeII GATC 5 cut(s) 261, 588, 816, 869, 883
NlaIII CATG 4 cut(s) 162, 211, 501, 762
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 3 cut(s) 11, 431, 479
NsiI ATGCAT 1 cut(s) 527
NspI RCATGY 1 cut(s) 211
PctI GAATGC 2 cut(s) 93, 510
PdmI GAANNNNTTC 1 cut(s) 863
PfeI GAWTC 2 cut(s) 395, 728
PspEI GGTNACC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 263
PspPI GGNCC 1 cut(s) 892
PsuI RGATCY 2 cut(s) 261, 588
RseI CAYNNNNRTG 2 cut(s) 242, 520
SaqAI TTAA 6 cut(s) 27, 132, 390, 807, 915, 955
Sau3AI GATC 5 cut(s) 261, 588, 816, 869, 883
Sau96I GGNCC 1 cut(s) 892
SduI GDGCHC 2 cut(s) 285, 707
SfaNI GCATC 3 cut(s) 183, 391, 534
SinI GGWCC 1 cut(s) 892
SmiMI CAYNNNNRTG 2 cut(s) 242, 520
SmlI CTYRAG 2 cut(s) 75, 98
SmoI CTYRAG 2 cut(s) 75, 98
Sse9I AATT 3 cut(s) 60, 602, 622
SsiI CCGC 3 cut(s) 182, 310, 326
SspMI CTAG 2 cut(s) 105, 179
StyI CCWWGG 3 cut(s) 273, 758, 829
TaaI ACNGT 2 cut(s) 196, 854
TaqI TCGA 3 cut(s) 819, 886, 936
TasI AATT 3 cut(s) 60, 602, 622
TfiI GAWTC 2 cut(s) 395, 728
Tru1I TTAA 6 cut(s) 27, 132, 390, 807, 915, 955
Tru9I TTAA 6 cut(s) 27, 132, 390, 807, 915, 955
TscAI CASTG 4 cut(s) 49, 56, 301, 857
TseFI GTSAC 3 cut(s) 11, 431, 479
Tsp45I GTSAC 3 cut(s) 11, 431, 479
TspDTI ATGAA 5 cut(s) 278, 456, 486, 557, 812
TspRI CASTG 4 cut(s) 49, 56, 301, 857
VpaK11BI GGWCC 1 cut(s) 892
XapI RAATTY 2 cut(s) 60, 602
XceI RCATGY 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 863
XspI CTAG 2 cut(s) 105, 179
Zsp2I ATGCAT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.