FvH4_1g11150

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002066
Physical Location & Seq
Reverse (-)
6081548 .. 6085707
4160 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11150.t3

Sequence Viewer

Length: 1182 bp
ATGTTATCAAGGTTGATGAACTTTCTGAGGGCCTGCTGGCGACCATCCTCGGACGGATATGTAAATGCAGGTTCCGATGCAGCTGGCAAACAAGAAGGATTACTTTGGTATAAAGACTTTGGGCAACACTTGAATGGTGACTTTTCAATGGCTGTCGTACAGGCCAACAATTTGCTTGAGGATCAGAGCCAGATTGAGTCTGGTCCCTTGAGCTCGCTTGAGTCTGGCCCTTATGGTACCTTTCTTGGAATTTATGATGGGCACGGTGGCCCTGAGACCTCTCGTTATGTCAATGATCACCTATTCCAGAATTTGAAAAGGTTCACGTCAGAGCAACAGTCCATGTCAGTGGATGTGATACGGAAAGCATATCAAGCAACAGAAGATGGATTCCTCTCTATTGTTACCAAACAATGGCCTGTGAAACCCCAAATTGCAGCCGTTGGATCTTGTTGCCTTGCTGGTGTGATCTGTGGAGGCACCCTTTACATTGCCAATGTTGGTGACTCCCGTGCTGTGCTGGGGAGAGCTGTGAAGGCTACTGGAGAGGTACTTGCCATCCAGCTGTCAGCAGAGCACAATGTGGCCATAGAGTCTGTCAGACAAGAGATGCATTCTTTGCATCCAGATGACTCACATATTGTAGTGTTGAAGCATAATGTATGGCGTGTAAAGGGATTGATACAGATTTCTAGATCCATTGGAGATGTGTATTTAAAAAAGCCTGAGTTTAACAGGGAGCCTTTATATGCCAAGTTTCGCCTGCGTGAACCTTTCAAAAGGCCAATTTTAAGCGCGGATCCAGCAATTTCTGTGCATGAACTTCAACCACATGATCAATTTCTGATATTTGCTTCCGATGGGCTCTGGGAGCACCTTAGCAATCAGGAAGCAGTTGATATTGTCCAAAGTCACCCACACAGCGGAAGTGCTCGGAGGCTTGTCAAAGCTGCATTACTGGAAGCAGCTAAGAAGAGAGAAATGAGATATTCCGATTTAAAGAAAATAGACCGTGGTGTACGCAGACATTTCCACGATGATATAACAGTCATAGTCGTATTTCTTGACTTGAATCTTGTGAGCAGAGCTAGCTCAACCAGAGGCCCTACTTTGTCTGTGAGAGGAGGCGGTATTAGTCTACCTGCAAAAACTCTTGCCCCTATGGAACTGAATGCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP2C

Protein Analysis

394

Amino Acids

43.46

Weight (kDa)

8.26

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 77 - 306 1.7e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 59, 1150
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 2 cut(s) 236, 479
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 1 cut(s) 1138
AccII CGCG 1 cut(s) 797
AciI CCGC 3 cut(s) 797, 924, 1128
AclWI GGATC 5 cut(s) 189, 454, 690, 794, 807
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 2 cut(s) 249, 310
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 4 cut(s) 159, 238, 552, 1020
AfiI CCNNNNNNNGG 2 cut(s) 414, 923
AgsI TTSAA 7 cut(s) 133, 147, 316, 652, 778, 827, 1072
AjiI CACGTC 1 cut(s) 327
AluBI AGCT 8 cut(s) 83, 213, 530, 565, 950, 968, 1088, 1092
AluI AGCT 8 cut(s) 83, 213, 530, 565, 950, 968, 1088, 1092
Alw21I GWGCWC 4 cut(s) 215, 579, 876, 934
Alw26I GTCTC 1 cut(s) 269
AlwI GGATC 5 cut(s) 189, 454, 690, 794, 807
AoxI GGCC 8 cut(s) 30, 162, 226, 268, 416, 585, 782, 1102
ApeKI GCWGC 4 cut(s) 80, 437, 950, 965
ApoI RAATTY 2 cut(s) 249, 310
Asp700I GAANNNNTTC 1 cut(s) 320
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 797
AspS9I GGNCC 5 cut(s) 30, 203, 227, 269, 1103
AsuHPI GGTGA 4 cut(s) 149, 290, 515, 905
AsuNHI GCTAGC 1 cut(s) 1088
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 264
BalI TGGCCA 1 cut(s) 587
BamHI GGATCC 1 cut(s) 799
BanI GGYRCC 2 cut(s) 236, 479
BanII GRGCYC 2 cut(s) 215, 867
Bbv12I GWGCWC 4 cut(s) 215, 579, 876, 934
BbvI GCAGC 4 cut(s) 92, 449, 937, 977
BccI CCATC 5 cut(s) 52, 251, 380, 566, 854
BceAI ACGGC 1 cut(s) 425
BclI TGATCA 2 cut(s) 295, 835
BcoDI GTCTC 1 cut(s) 269
BfaI CTAG 2 cut(s) 693, 1089
BfuAI ACCTGC 2 cut(s) 59, 1150
BisI GCNGC 4 cut(s) 81, 438, 951, 966
BlsI GCNGC 4 cut(s) 82, 439, 952, 967
Bme18I GGWCC 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 5 cut(s) 30, 203, 227, 269, 1103
BmiI GGNNCC 6 cut(s) 73, 205, 238, 481, 741, 801
BmsI GCATC 3 cut(s) 67, 600, 631
BmtI GCTAGC 1 cut(s) 1092
BpmI CTGGAG 1 cut(s) 564
Bpu10I CCTNAGC 1 cut(s) 878
BpuEI CTTGAG 3 cut(s) 197, 229, 239
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 48, 1012
Bsc4I CCNNNNNNNGG 2 cut(s) 414, 923
Bse1I ACTGG 2 cut(s) 547, 963
Bse3DI GCAATG 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 48, 1012
BseGI GGATG 4 cut(s) 44, 358, 558, 622
BseLI CCNNNNNNNGG 2 cut(s) 414, 923
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 3 cut(s) 17, 264, 717
BseNI ACTGG 2 cut(s) 547, 963
BseRI GAGGAG 1 cut(s) 1137
BseSI GKGCMC 1 cut(s) 264
BseXI GCAGC 4 cut(s) 92, 449, 937, 977
BseYI CCCAGC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 797
BshFI GGCC 8 cut(s) 32, 164, 228, 270, 418, 587, 784, 1104
BshNI GGYRCC 2 cut(s) 236, 479
BsiHKAI GWGCWC 4 cut(s) 215, 579, 876, 934
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 414, 923
BsmAI GTCTC 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 2 cut(s) 613, 1177
BsnI GGCC 8 cut(s) 32, 164, 228, 270, 418, 587, 784, 1104
Bso31I GGTCTC 1 cut(s) 269
Bsp1286I GDGCHC 6 cut(s) 215, 264, 579, 867, 876, 934
Bsp143I GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
BspACI CCGC 3 cut(s) 797, 924, 1128
BspANI GGCC 8 cut(s) 32, 164, 228, 270, 418, 587, 784, 1104
BspCNI CTCAG 3 cut(s) 18, 265, 718
BspFNI CGCG 1 cut(s) 797
BspLI GGNNCC 6 cut(s) 73, 205, 238, 481, 741, 801
BspMI ACCTGC 2 cut(s) 59, 1150
BspOI GCTAGC 1 cut(s) 1092
BspPI GGATC 5 cut(s) 189, 454, 690, 794, 807
BspT107I GGYRCC 2 cut(s) 236, 479
BspTNI GGTCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 489
BsrI ACTGG 2 cut(s) 547, 963
BssECI CCNNGG 2 cut(s) 48, 1012
BssMI GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
Bst4CI ACNGT 4 cut(s) 266, 339, 1013, 1048
Bst6I CTCTTC 1 cut(s) 968
BstAPI GCANNNNNTGC 1 cut(s) 619
BstC8I GCNNGC 6 cut(s) 34, 38, 85, 215, 764, 1090
BstDEI CTNAG 5 cut(s) 26, 273, 726, 878, 969
BstDSI CCRYGG 1 cut(s) 1012
BstF5I GGATG 4 cut(s) 44, 358, 558, 622
BstFNI CGCG 1 cut(s) 797
BstHHI GCGC 1 cut(s) 797
BstKTI GATC 7 cut(s) 184, 298, 449, 471, 698, 802, 838
BstMAI GTCTC 1 cut(s) 269
BstMBI GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
BstMWI GCNNNNNNNGC 6 cut(s) 374, 536, 619, 803, 871, 1089
BstSLI GKGCMC 1 cut(s) 264
BstUI CGCG 1 cut(s) 797
BstV1I GCAGC 4 cut(s) 92, 449, 937, 977
BstX2I RGATCY 3 cut(s) 446, 695, 799
BstXI CCANNNNNNTGG 1 cut(s) 349
BstYI RGATCY 3 cut(s) 446, 695, 799
BsuRI GGCC 8 cut(s) 32, 164, 228, 270, 418, 587, 784, 1104
BtgI CCRYGG 1 cut(s) 1012
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 4 cut(s) 44, 358, 558, 622
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 2 cut(s) 59, 1150
Cac8I GCNNGC 6 cut(s) 34, 38, 85, 215, 764, 1090
CfoI GCGC 1 cut(s) 797
Cfr13I GGNCC 5 cut(s) 30, 203, 227, 269, 1103
Csp6I GTAC 4 cut(s) 158, 237, 551, 1019
CviAII CATG 3 cut(s) 343, 818, 833
CviQI GTAC 4 cut(s) 158, 237, 551, 1019
DdeI CTNAG 5 cut(s) 26, 273, 726, 878, 969
DpnI GATC 7 cut(s) 183, 297, 448, 470, 697, 801, 837
DpnII GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
DraI TTTAAA 2 cut(s) 717, 999
DraIII CACNNNGTG 1 cut(s) 583
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 968
EarI CTCTTC 1 cut(s) 968
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 215, 867
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoO109I RGGNCCY 2 cut(s) 30, 1103
EcoT22I ATGCAT 1 cut(s) 615
EcoT38I GRGCYC 2 cut(s) 215, 867
FaeI CATG 3 cut(s) 346, 821, 836
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 1 cut(s) 189
FatI CATG 3 cut(s) 342, 817, 832
FbaI TGATCA 2 cut(s) 295, 835
FblI GTMKAC 1 cut(s) 1138
Fnu4HI GCNGC 4 cut(s) 81, 438, 951, 966
FokI GGATG 4 cut(s) 31, 365, 545, 609
FriOI GRGCYC 2 cut(s) 215, 867
Fsp4HI GCNGC 4 cut(s) 81, 438, 951, 966
FspBI CTAG 2 cut(s) 693, 1089
GlaI GCGC 1 cut(s) 796
GluI GCNGC 4 cut(s) 81, 438, 951, 966
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 564
HaeIII GGCC 8 cut(s) 32, 164, 228, 270, 418, 587, 784, 1104
HhaI GCGC 1 cut(s) 797
Hin1II CATG 3 cut(s) 346, 821, 836
Hin6I GCGC 1 cut(s) 795
HinP1I GCGC 1 cut(s) 795
HinfI GANTC 7 cut(s) 197, 221, 390, 506, 593, 632, 1072
HphI GGTGA 4 cut(s) 149, 290, 515, 905
Hpy166II GTNNAC 4 cut(s) 324, 770, 1019, 1139
Hpy188III TCNNGA 5 cut(s) 307, 626, 693, 887, 1064
Hpy8I GTNNAC 4 cut(s) 324, 770, 1019, 1139
HpyAV CCTTC 2 cut(s) 89, 529
HpyCH4III ACNGT 4 cut(s) 266, 339, 1013, 1048
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 8 cut(s) 68, 80, 437, 613, 622, 817, 953, 1145
HpyF10VI GCNNNNNNNGC 6 cut(s) 374, 536, 619, 803, 871, 1089
HpyF3I CTNAG 5 cut(s) 26, 273, 726, 878, 969
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 3 cut(s) 346, 821, 836
HspAI GCGC 1 cut(s) 795
KpnI GGTACC 1 cut(s) 240
Ksp22I TGATCA 2 cut(s) 295, 835
Kzo9I GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
LmnI GCTCC 2 cut(s) 739, 871
Lsp1109I GCAGC 4 cut(s) 92, 449, 937, 977
LweI GCATC 3 cut(s) 67, 600, 631
MaeI CTAG 2 cut(s) 693, 1089
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 4 cut(s) 137, 403, 503, 911
MalI GATC 7 cut(s) 183, 297, 448, 470, 697, 801, 837
MboI GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
MboII GAAGA 2 cut(s) 395, 985
MflI RGATCY 3 cut(s) 446, 695, 799
MhlI GDGCHC 6 cut(s) 215, 264, 579, 867, 876, 934
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 7 cut(s) 169, 249, 310, 432, 786, 807, 839
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 5 cut(s) 206, 230, 500, 602, 626
MmeI TCCRAC 1 cut(s) 424
Mox20I TGGCCA 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 615
MroXI GAANNNNTTC 1 cut(s) 320
MscI TGGCCA 1 cut(s) 587
MseI TTAA 4 cut(s) 716, 732, 791, 998
MslI CAYNNNNRTG 3 cut(s) 132, 347, 627
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 3 cut(s) 83, 565, 924
Mva1269I GAATGC 2 cut(s) 613, 1177
MvnI CGCG 1 cut(s) 797
MwoI GCNNNNNNNGC 6 cut(s) 374, 536, 619, 803, 871, 1089
NdeII GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
NheI GCTAGC 1 cut(s) 1088
NlaIII CATG 3 cut(s) 346, 821, 836
NlaIV GGNNCC 6 cut(s) 73, 205, 238, 481, 741, 801
NmuCI GTSAC 3 cut(s) 137, 503, 911
NsiI ATGCAT 1 cut(s) 615
PctI GAATGC 2 cut(s) 613, 1177
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 2 cut(s) 390, 1072
PflMI CCANNNNNTGG 1 cut(s) 414
PkrI GCNGC 4 cut(s) 82, 439, 952, 967
PleI GAGTC 5 cut(s) 205, 229, 500, 601, 626
PpsI GAGTC 5 cut(s) 205, 229, 500, 601, 626
Psp124BI GAGCTC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 520
PspN4I GGNNCC 6 cut(s) 73, 205, 238, 481, 741, 801
PspPI GGNCC 5 cut(s) 30, 203, 227, 269, 1103
PsuI RGATCY 3 cut(s) 446, 695, 799
PvuII CAGCTG 2 cut(s) 83, 565
RsaI GTAC 4 cut(s) 159, 238, 552, 1020
RsaNI GTAC 4 cut(s) 158, 237, 551, 1019
RseI CAYNNNNRTG 3 cut(s) 132, 347, 627
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 4 cut(s) 716, 732, 791, 998
SatI GCNGC 4 cut(s) 81, 438, 951, 966
Sau3AI GATC 7 cut(s) 181, 295, 446, 468, 695, 799, 835
Sau96I GGNCC 5 cut(s) 30, 203, 227, 269, 1103
SchI GAGTC 5 cut(s) 206, 230, 500, 602, 626
SduI GDGCHC 6 cut(s) 215, 264, 579, 867, 876, 934
SfaNI GCATC 3 cut(s) 67, 600, 631
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 132, 347, 627
SmlI CTYRAG 3 cut(s) 176, 208, 218
SmoI CTYRAG 3 cut(s) 176, 208, 218
Sse9I AATT 7 cut(s) 169, 249, 310, 432, 786, 807, 839
SsiI CCGC 3 cut(s) 797, 924, 1128
SspMI CTAG 2 cut(s) 693, 1089
SstI GAGCTC 1 cut(s) 215
TaaI ACNGT 4 cut(s) 266, 339, 1013, 1048
TaiI ACGT 1 cut(s) 329
TasI AATT 7 cut(s) 169, 249, 310, 432, 786, 807, 839
TfiI GAWTC 2 cut(s) 390, 1072
Tru1I TTAA 4 cut(s) 716, 732, 791, 998
Tru9I TTAA 4 cut(s) 716, 732, 791, 998
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 3 cut(s) 137, 503, 911
TseI GCWGC 4 cut(s) 80, 437, 950, 965
Tsp45I GTSAC 3 cut(s) 137, 503, 911
TspDTI ATGAA 2 cut(s) 32, 834
TspGWI ACGGA 2 cut(s) 69, 376
TspRI CASTG 1 cut(s) 354
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 2 cut(s) 249, 310
XbaI TCTAGA 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 1138
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 693, 1089
Zsp2I ATGCAT 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.