Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040240.1

Orthogroup ID

OG0002066

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 509

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040240.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ggaagtgcaaagcggttggtgaaaactgcactgcaagaagcagctaaaaagagagaaatgcgatattcagacttgaagaagattgaccgtggtgttcgtcgccatttccacgatgacataacagtaattgttgtgtttctcgactcaaatcttgtgagcaaggctacttctgtcaagtgctcagtgagagggggcggtatcagcctgcctcctaatactctggctccttacacgactacacccacggaagctggcaatacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

87

Amino Acids

9.48

Weight (kDa)

10.0

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51370 AT3G51370 AT3G51370 AT4G38520 AT4G38520 AT5G66080 AT5G66080
fragaria_vesca	FvH4_1g11150 FvH4_1g11150 FvH4_2g15570 FvH4_2g15570 FvH4_2g15570
malus_domestica	MD02G1124100.v1.1 MD05G1124200.v1.1 MD10G1127000.v1.1 MD15G1238100.v1.1
prunus_persica	Prupe.7G174300_v2.0.a1 Prupe.7G174300_v2.0.a1 Prupe.8G168000_v2.0.a1
pyrus_communis	pycom02g09700 pycom05g11820 pycom10g10880 pycom15g21180
rosa_chinensis	RchiOBHm_Chr2g0098431 RchiOBHm_Chr6g0278751
rosa_laevigata	RLG00000013196 RLG00000016799
rosa_multiflora	Rmu_sc0011772.1_g000003 Rmu_sc0040240.1_g000001 Rmu_ssc0000196.1_g000019
rosa_roxburghii	Rroxscaffold_2G00143970 Rroxscaffold_7G00189660 Rroxscaffold_7G00189930
rosa_rugosa	Rorug02G0073200 Rorug02G0073200 Rorug06G0118500 Rorug06G0118600
rosa_samantha	Rh2CG124900 Rh2DG125000 Rh6BG233000 Rh6CG235200 Rh6DG226700
rosa_wichuraiana	Rw2G009430 Rw6G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 195
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	2 cut(s)	44, 251
AluI	AGCT	2 cut(s)	44, 251
Alw21I	GWGCWC	1 cut(s)	182
ApeKI	GCWGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	1 cut(s)	53
BisI	GCNGC	1 cut(s)	42
BlsI	GCNGC	1 cut(s)	43
BmiI	GGNNCC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	88, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
BseDI	CCNNGG	2 cut(s)	88, 243
BseMII	CTCAG	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	53
BsgI	GTGCAG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	182
BspACI	CCGC	2 cut(s)	13, 195
BspCNI	CTCAG	1 cut(s)	194
BspLI	GGNNCC	1 cut(s)	225
BssECI	CCNNGG	2 cut(s)	88, 243
Bst4CI	ACNGT	2 cut(s)	89, 124
BstC8I	GCNNGC	2 cut(s)	206, 253
BstDEI	CTNAG	1 cut(s)	181
BstDSI	CCRYGG	2 cut(s)	88, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	53
BtgI	CCRYGG	2 cut(s)	88, 243
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	2 cut(s)	29, 189
Cac8I	GCNNGC	2 cut(s)	206, 253
CviJI	RGCY	5 cut(s)	44, 164, 204, 224, 251
CviKI_1	RGCY	5 cut(s)	44, 164, 204, 224, 251
DdeI	CTNAG	1 cut(s)	181
FaiI	YATR	1 cut(s)	119
Fnu4HI	GCNGC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	42
GluI	GCNGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	89, 124
HpyCH4V	TGCA	3 cut(s)	8, 29, 34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpyF3I	CTNAG	1 cut(s)	181
LmnI	GCTCC	1 cut(s)	229
LpnPI	CCDG	3 cut(s)	206, 218, 237
Lsp1109I	GCAGC	1 cut(s)	53
MboII	GAAGA	2 cut(s)	88, 91
MhlI	GDGCHC	1 cut(s)	182
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	2 cut(s)	182, 219
MwoI	GCNNNNNNNGC	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	225
SatI	GCNGC	1 cut(s)	42
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	182
SetI	ASST	3 cut(s)	46, 253, 263
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	2 cut(s)	13, 195
TaaI	ACNGT	2 cut(s)	89, 124
TaqI	TCGA	1 cut(s)	141
TasI	AATT	1 cut(s)	126
TscAI	CASTG	2 cut(s)	36, 189
TseI	GCWGC	1 cut(s)	41
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	36, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.