Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Forward (+)

19474945 .. 19476181

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52525.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGACTAAAAGCAAGAAGAAGATCCTGAAGACTGTATCTGTTGTCGACATCAGCTGCGGCAACTGTATAAAACCAACTTTCGCCTCTATTTTCAACTTTTTCTCCAAAAAGCCTAAACGTCCCTCGTCTACTTACCGTCACTGCCACTCCTCCATCTCCTCCGCCACACCCTCCTCCACGCCTTTGGCCACCGCATCCGTCGCCGTGGAGAAAGATTCTGACGATCCGTACCTAGATTTCCGGCAGTCTATGCTTCAAATGATACTAGAGAACCAGATTTACTCGAAAGATGAACTTAGAGAGCTTCTTCAATGTTTCCTCAGCCTCAATTCTCACTATCATCACGGCATCATCGTCCGTGCCTTCTCGGAAATATGGGAAGACGTTTCCTCCGCCGCTGCTTCCGCCGTCGAAGCGTCCCCTCTCATCACCCGTCATGTGTCACGTGCGTCACGTGATTACTATAACTATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1900457 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

159

Amino Acids

17.91

Weight (kDa)

8.87

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	74 - 130	3.1e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 131
AciI	CCGC	6 cut(s)	60, 165, 195, 396, 399, 408
AclWI	GGATC	2 cut(s)	19, 221
AcoI	YGGCCR	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	50
AcvI	CACGTG	2 cut(s)	449, 458
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	3 cut(s)	97, 260, 314
AluBI	AGCT	2 cut(s)	57, 307
AluI	AGCT	2 cut(s)	57, 307
AlwI	GGATC	2 cut(s)	19, 221
AoxI	GGCC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	57, 401
AsuHPI	GGTGA	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	191
BbrPI	CACGTG	2 cut(s)	449, 458
BbsI	GAAGAC	2 cut(s)	38, 390
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	44, 388
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	3 cut(s)	191, 364, 395
BfaI	CTAG	3 cut(s)	236, 269, 478
BisI	GCNGC	4 cut(s)	58, 61, 399, 402
BlsI	GCNGC	4 cut(s)	59, 62, 400, 403
BmsI	GCATC	2 cut(s)	206, 360
BpiI	GAAGAC	2 cut(s)	38, 390
Bpu10I	CCTNAGC	1 cut(s)	323
BsaAI	YACGTR	2 cut(s)	449, 458
BsaJI	CCNNGG	1 cut(s)	207
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 134, 164, 377, 407
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	337
BseRI	GAGGAG	3 cut(s)	142, 151, 166
BseXI	GCAGC	2 cut(s)	44, 388
BshFI	GGCC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	2 cut(s)	108, 406
BsmFI	GGGAC	2 cut(s)	108, 406
BsnI	GGCC	1 cut(s)	191
Bsp143I	GATC	2 cut(s)	24, 226
BspACI	CCGC	6 cut(s)	60, 165, 195, 396, 399, 408
BspANI	GGCC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	336
BspPI	GGATC	2 cut(s)	19, 221
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	24, 226
Bst4CI	ACNGT	3 cut(s)	37, 68, 140
BstAPI	GCANNNNNTGC	1 cut(s)	253
BstBAI	YACGTR	2 cut(s)	449, 458
BstDEI	CTNAG	2 cut(s)	299, 323
BstDSI	CCRYGG	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	197
BstKTI	GATC	2 cut(s)	27, 229
BstMBI	GATC	2 cut(s)	24, 226
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 253, 407, 416
BstV1I	GCAGC	2 cut(s)	44, 388
BstV2I	GAAGAC	2 cut(s)	38, 390
BstX2I	RGATCY	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
CseI	GACGC	2 cut(s)	408, 441
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	440
CviJI	RGCY	5 cut(s)	57, 115, 191, 307, 327
CviKI_1	RGCY	5 cut(s)	57, 115, 191, 307, 327
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	299, 323
DpnI	GATC	2 cut(s)	26, 228
DpnII	GATC	2 cut(s)	24, 226
EaeI	YGGCCR	1 cut(s)	189
EciI	GGCGGA	3 cut(s)	154, 385, 397
Eco57I	CTGAAG	1 cut(s)	50
Eco72I	CACGTG	2 cut(s)	449, 458
FaeI	CATG	1 cut(s)	443
FaiI	YATR	5 cut(s)	71, 254, 379, 441, 468
FalI	AAGNNNNNCTT	2 cut(s)	282, 314
FaqI	GGGAC	2 cut(s)	108, 406
FatI	CATG	1 cut(s)	439
FblI	GTMKAC	2 cut(s)	48, 131
Fnu4HI	GCNGC	4 cut(s)	58, 61, 399, 402
FokI	GGATG	1 cut(s)	184
Fsp4HI	GCNGC	4 cut(s)	58, 61, 399, 402
FspBI	CTAG	3 cut(s)	236, 269, 478
GluI	GCNGC	4 cut(s)	58, 61, 399, 402
HaeIII	GGCC	1 cut(s)	191
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	2 cut(s)	408, 441
Hin1II	CATG	1 cut(s)	443
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	218
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	49, 132
Hpy188I	TCNGA	2 cut(s)	223, 373
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	49, 132
Hpy99I	CGWCG	2 cut(s)	206, 416
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	3 cut(s)	37, 68, 140
HpyCH4IV	ACGT	4 cut(s)	121, 387, 448, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 253, 407, 416
HpyF3I	CTNAG	2 cut(s)	299, 323
HpySE526I	ACGT	4 cut(s)	121, 387, 448, 457
Hsp92II	CATG	1 cut(s)	443
Kzo9I	GATC	2 cut(s)	24, 226
LpnPI	CCDG	3 cut(s)	41, 257, 290
Lsp1109I	GCAGC	2 cut(s)	44, 388
LweI	GCATC	2 cut(s)	206, 360
MaeI	CTAG	3 cut(s)	236, 269, 478
MaeII	ACGT	4 cut(s)	121, 387, 448, 457
MaeIII	GTNAC	3 cut(s)	140, 444, 453
MalI	GATC	2 cut(s)	26, 228
MboI	GATC	2 cut(s)	24, 226
MboII	GAAGA	5 cut(s)	31, 34, 43, 302, 395
MflI	RGATCY	1 cut(s)	24
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	1 cut(s)	331
MluNI	TGGCCA	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	57, 401
MspI	CCGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	4 cut(s)	203, 253, 407, 416
NdeII	GATC	2 cut(s)	24, 226
NlaIII	CATG	1 cut(s)	443
NmuCI	GTSAC	3 cut(s)	140, 444, 453
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 454
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	4 cut(s)	59, 62, 400, 403
PmaCI	CACGTG	2 cut(s)	449, 458
PmlI	CACGTG	2 cut(s)	449, 458
Ppu21I	YACGTR	2 cut(s)	449, 458
PspCI	CACGTG	2 cut(s)	449, 458
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PsuI	RGATCY	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	57
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SalI	GTCGAC	1 cut(s)	47
SatI	GCNGC	4 cut(s)	58, 61, 399, 402
Sau3AI	GATC	2 cut(s)	24, 226
SetI	ASST	7 cut(s)	59, 124, 237, 309, 390, 451, 460
SfaNI	GCATC	2 cut(s)	206, 360
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	6 cut(s)	60, 165, 195, 396, 399, 408
SspMI	CTAG	3 cut(s)	236, 269, 478
TaaI	ACNGT	3 cut(s)	37, 68, 140
TaiI	ACGT	4 cut(s)	124, 390, 451, 460
TaqI	TCGA	3 cut(s)	48, 287, 414
TasI	AATT	1 cut(s)	331
TauI	GCSGC	2 cut(s)	63, 401
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	3 cut(s)	140, 444, 453
TseI	GCWGC	2 cut(s)	57, 401
Tsp45I	GTSAC	3 cut(s)	140, 444, 453
TspDTI	ATGAA	1 cut(s)	309
TspGWI	ACGGA	3 cut(s)	190, 219, 350
TspRI	CASTG	1 cut(s)	149
XmiI	GTMKAC	2 cut(s)	48, 131
XspI	CTAG	3 cut(s)	236, 269, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.