Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

17318409 .. 17318975

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1152300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCTTCTTCCAGCAAAAATAAGCTTCTCACTACCATTCTCACAGCCAATATTCCAGGCTGCGATTGCGGCAGGCCGAAGCTCTCCGACGTATACGACCCAACCCCAAAACCCAAAATCCAAATCCACAAAAACCCTATTCACCGATCCCACTCCTCTTCAAGTTCCGGTGATCAAAATGGCAAGAGTTTCACCGGTGACGACGACGAAGATCAGTGCACCTCCACCACCGTCTCTTTCAACAACAACTCGTCCTTACAGTCAAAGCCATTCGATTCAGCAGAGAGTACGAATCCGAAGAACACGAAGATTTCAAGCCCGAATACAACGAAAACCAGCGGCAGCATTGCGGTGGTGAAGGAATCAAACGACCCGTATCAGGATTTCAGGCAGTCGATGCTGCAGATGATTGTGGAGAAGCAGATTTACTGGAAGGAGGATCTGCAGGAGCTGCTCCGCTGCTTTCTGGAACTCAACTCTCCGTCCCACCACGATGTTATCGTCCGAGCATTCACACAAATCTGGAACGATCTGATCAGCGAAAGCAAGAAGCCGATGATCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

189

Amino Acids

21.0

Weight (kDa)

6.51

Isoelectric Point (pI)

56.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	122 - 178	4.3e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AciI	CCGC	4 cut(s)	69, 339, 350, 457
AclWI	GGATC	2 cut(s)	141, 447
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgeI	ACCGGT	1 cut(s)	194
AgsI	TTSAA	3 cut(s)	162, 241, 315
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	25, 82, 451
AluI	AGCT	3 cut(s)	25, 82, 451
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	238
Alw44I	GTGCAC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	141, 447
AlwNI	CAGNNNCTG	1 cut(s)	451
AoxI	GGCC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	217
ApeKI	GCWGC	5 cut(s)	60, 342, 400, 451, 459
AsiGI	ACCGGT	1 cut(s)	194
AsuHPI	GGTGA	5 cut(s)	134, 182, 184, 209, 367
BaeGI	GKGCMC	1 cut(s)	221
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	5 cut(s)	47, 354, 387, 438, 446
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	3 cut(s)	172, 534, 558
BcoDI	GTCTC	1 cut(s)	238
BfmI	CTRYAG	2 cut(s)	401, 443
BisI	GCNGC	7 cut(s)	61, 70, 340, 343, 401, 452, 460
BlsI	GCNGC	7 cut(s)	62, 71, 341, 344, 402, 453, 461
Bme1390I	CCNGG	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	387
BsaWI	WCCGGW	2 cut(s)	167, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse118I	RCCGGY	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	5 cut(s)	47, 354, 387, 438, 446
BshFI	GGCC	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	168, 195
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
BspACI	CCGC	4 cut(s)	69, 339, 350, 457
BspANI	GGCC	1 cut(s)	76
BspMAI	CTGCAG	2 cut(s)	405, 447
BspPI	GGATC	2 cut(s)	141, 447
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	434
BssAI	RCCGGY	1 cut(s)	194
BssMI	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
BssNAI	GTATAC	1 cut(s)	94
Bst1107I	GTATAC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	232, 261
Bst6I	CTCTTC	1 cut(s)	163
BstAPI	GCANNNNNTGC	2 cut(s)	397, 451
BstC8I	GCNNGC	1 cut(s)	74
BstKTI	GATC	7 cut(s)	149, 175, 214, 442, 532, 537, 561
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	66, 69, 397, 451
BstNI	CCWGG	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	401, 443
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	5 cut(s)	47, 354, 387, 438, 446
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BstZ17I	GTATAC	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	194
Csp6I	GTAC	1 cut(s)	288
CspAI	ACCGGT	1 cut(s)	194
CviJI	RGCY	9 cut(s)	25, 47, 60, 76, 82, 268, 318, 451, 553
CviKI_1	RGCY	9 cut(s)	25, 47, 60, 76, 82, 268, 318, 451, 553
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	7 cut(s)	148, 174, 213, 441, 531, 536, 560
DpnII	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
Eam1104I	CTCTTC	1 cut(s)	163
EarI	CTCTTC	1 cut(s)	163
EcoRII	CCWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	238
FaiI	YATR	3 cut(s)	94, 563, 565
FaqI	GGGAC	1 cut(s)	469
FauNDI	CATATG	1 cut(s)	563
FbaI	TGATCA	3 cut(s)	172, 534, 558
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	7 cut(s)	61, 70, 340, 343, 401, 452, 460
Fsp4HI	GCNGC	7 cut(s)	61, 70, 340, 343, 401, 452, 460
GluI	GCNGC	7 cut(s)	61, 70, 340, 343, 401, 452, 460
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	2 cut(s)	168, 195
HindIII	AAGCTT	1 cut(s)	23
HinfI	GANTC	3 cut(s)	275, 292, 362
HpaII	CCGG	2 cut(s)	168, 195
HphI	GGTGA	5 cut(s)	134, 182, 184, 209, 367
Hpy166II	GTNNAC	2 cut(s)	94, 219
Hpy188I	TCNGA	4 cut(s)	88, 297, 506, 534
Hpy188III	TCNNGA	3 cut(s)	380, 467, 523
Hpy8I	GTNNAC	2 cut(s)	94, 219
Hpy99I	CGWCG	3 cut(s)	92, 206, 209
HpyAV	CCTTC	2 cut(s)	352, 427
HpyCH4III	ACNGT	2 cut(s)	232, 261
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	219, 403, 445
HpyF10VI	GCNNNNNNNGC	4 cut(s)	66, 69, 397, 451
HpySE526I	ACGT	1 cut(s)	90
Ksp22I	TGATCA	3 cut(s)	172, 534, 558
Kzo9I	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
LmnI	GCTCC	2 cut(s)	448, 459
Lsp1109I	GCAGC	5 cut(s)	47, 354, 387, 438, 446
LweI	GCATC	1 cut(s)	387
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	7 cut(s)	148, 174, 213, 441, 531, 536, 560
MboI	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
MboII	GAAGA	4 cut(s)	150, 221, 310, 319
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	221
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	166, 232, 430
MslI	CAYNNNNRTG	2 cut(s)	350, 492
MspA1I	CMGCKG	2 cut(s)	339, 459
MspI	CCGG	2 cut(s)	168, 195
MspR9I	CCNGG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	66, 69, 397, 451
NdeI	CATATG	1 cut(s)	563
NdeII	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
NmuCI	GTSAC	1 cut(s)	197
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PctI	GAATGC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	275, 292, 362
PinAI	ACCGGT	1 cut(s)	194
PkrI	GCNGC	7 cut(s)	62, 71, 341, 344, 402, 453, 461
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PstI	CTGCAG	2 cut(s)	405, 447
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	2 cut(s)	350, 492
SatI	GCNGC	7 cut(s)	61, 70, 340, 343, 401, 452, 460
Sau3AI	GATC	7 cut(s)	146, 172, 211, 439, 529, 534, 558
ScrFI	CCNGG	1 cut(s)	57
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	5 cut(s)	27, 84, 93, 224, 453
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	2 cut(s)	401, 443
SgrAI	CRCCGGYG	1 cut(s)	194
SmiMI	CAYNNNNRTG	2 cut(s)	350, 492
SsiI	CCGC	4 cut(s)	69, 339, 350, 457
SspI	AATATT	1 cut(s)	52
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	232, 261
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	2 cut(s)	273, 395
TauI	GCSGC	2 cut(s)	72, 342
TfiI	GAWTC	3 cut(s)	275, 292, 362
TscAI	CASTG	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	5 cut(s)	60, 342, 400, 451, 459
Tsp45I	GTSAC	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	221
VneI	GTGCAC	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.