Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

18793215 .. 18794348

Gene Structure 1134 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTTCTACCAAAAAGACCAAGTTTCTGAAAACCCTAGTCACATCCAACATTAGAGGCTGCGGTTGTGGAAGACCAAAGCTCTCGGACGTTTACGAGCCAACCGCAAAACCCAAAATCCCCATTTGCAAAATAAACTCAAATCACCAAATACCCCATTCCTCTTCAAGCTCTTGTGACATGAGAAACGGAAGTTTCACAGTCGACGAAGATGACGAAGATCAGTGCACCTCCACCACCATCTCATTCAACAACGACTCAACAGTATCCTCATCCCAACCTTCAGATTCAGCAGAGATTCACTGTTCCAACAAGTCAAAGCCTCCAATCCCACCGCAGACCAAAATCGACAACAGCATTGCCGTGGTAAAAGATTCCGACAACCCTTATCAGGATTTCCGGCGGTCCATGCTTCAGATGATCGTAGAGAAAGAGATATACTCCAAGGAGGAACTCCAGGAGCTTCTGAGCTGCTTCCTCGAGCTCAATTCTAGACATCACCATGATGTTATCATTCAAGCTTTCACAGAAATCTGGAATGGTGATCTGGTTGACATTGCGAGGAAAAGAAGCGTACGTGTGAATCCCAGATGTGGAACGTGTGAAGATCATAAGCCATGTGAGGCATTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

212

Amino Acids

23.66

Weight (kDa)

6.16

Isoelectric Point (pI)

52.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	126 - 180	2e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	4 cut(s)	63, 105, 335, 403
AcuI	CTGAAG	2 cut(s)	267, 398
AfaI	GTAC	1 cut(s)	576
AfiI	CCNNNNNNNGG	2 cut(s)	391, 593
AflIII	ACRYGT	2 cut(s)	577, 599
AgsI	TTSAA	4 cut(s)	168, 250, 518, 631
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	6 cut(s)	82, 171, 463, 471, 484, 521
AluI	AGCT	6 cut(s)	82, 171, 463, 471, 484, 521
Alw21I	GWGCWC	2 cut(s)	230, 486
Alw44I	GTGCAC	1 cut(s)	226
Ama87I	CYCGRG	1 cut(s)	479
ApaLI	GTGCAC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	60, 471
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	3 cut(s)	137, 491, 554
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	486
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	230, 486
BbvI	GCAGC	2 cut(s)	47, 458
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	1 cut(s)	458
BciVI	GTATCC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	38, 492
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	2 cut(s)	61, 472
BlsI	GCNGC	2 cut(s)	62, 473
Bme1390I	CCNGG	1 cut(s)	458
Bme18I	GGWCC	1 cut(s)	405
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	2 cut(s)	425, 457
BpmI	CTGGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	578
BsaJI	CCNNGG	2 cut(s)	363, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 593
Bse3DI	GCAATG	2 cut(s)	357, 555
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	363, 444
BseGI	GGATG	2 cut(s)	44, 272
BseLI	CCNNNNNNNGG	2 cut(s)	391, 593
BseMI	GCAATG	2 cut(s)	357, 555
BseMII	CTCAG	1 cut(s)	458
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	47, 458
BsiHKAI	GWGCWC	2 cut(s)	230, 486
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	1 cut(s)	400
BsiWI	CGTACG	1 cut(s)	574
BslI	CCNNNNNNNGG	2 cut(s)	391, 593
BsoBI	CYCGRG	1 cut(s)	479
Bsp1286I	GDGCHC	2 cut(s)	230, 486
Bsp143I	GATC	4 cut(s)	220, 420, 544, 607
BspACI	CCGC	4 cut(s)	63, 105, 335, 403
BspCNI	CTCAG	1 cut(s)	459
BsrDI	GCAATG	2 cut(s)	357, 555
BssECI	CCNNGG	2 cut(s)	363, 444
BssMI	GATC	4 cut(s)	220, 420, 544, 607
BssT1I	CCWWGG	1 cut(s)	444
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	202, 265, 305
Bst6I	CTCTTC	1 cut(s)	169
BstBAI	YACGTR	1 cut(s)	578
BstDEI	CTNAG	1 cut(s)	467
BstDSI	CCRYGG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	44, 272
BstKTI	GATC	4 cut(s)	223, 423, 547, 610
BstMBI	GATC	4 cut(s)	220, 420, 544, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	409
BstNI	CCWGG	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	47, 458
BstV2I	GAAGAC	1 cut(s)	79
BsuI	GTATCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	363
BtsCI	GGATG	2 cut(s)	44, 272
BtsIMutI	CAGTG	2 cut(s)	230, 301
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	575
CviAII	CATG	4 cut(s)	181, 409, 503, 618
CviQI	GTAC	1 cut(s)	575
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	4 cut(s)	222, 422, 546, 609
DpnII	GATC	4 cut(s)	220, 420, 544, 607
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	484
Eco130I	CCWWGG	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	486
Eco47I	GGWCC	1 cut(s)	405
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	267, 398
Eco88I	CYCGRG	1 cut(s)	479
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	456
EcoT14I	CCWWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	4 cut(s)	184, 412, 506, 621
FaiI	YATR	6 cut(s)	182, 410, 439, 504, 612, 619
FatI	CATG	4 cut(s)	180, 408, 502, 617
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	61, 472
FokI	GGATG	2 cut(s)	31, 259
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	61, 472
FspBI	CTAG	2 cut(s)	38, 492
GluI	GCNGC	2 cut(s)	61, 472
GsuI	CTGGAG	1 cut(s)	440
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	4 cut(s)	184, 412, 506, 621
HincII	GTYRAC	2 cut(s)	205, 553
HindII	GTYRAC	2 cut(s)	205, 553
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	5 cut(s)	257, 287, 298, 374, 583
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	3 cut(s)	137, 491, 554
Hpy166II	GTNNAC	4 cut(s)	94, 205, 228, 553
Hpy188I	TCNGA	6 cut(s)	30, 88, 286, 379, 417, 468
Hpy188III	TCNNGA	3 cut(s)	392, 492, 535
Hpy8I	GTNNAC	4 cut(s)	94, 205, 228, 553
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	3 cut(s)	202, 265, 305
HpyCH4IV	ACGT	3 cut(s)	90, 577, 599
HpyCH4V	TGCA	2 cut(s)	129, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	409
HpyF3I	CTNAG	1 cut(s)	467
HpySE526I	ACGT	3 cut(s)	90, 577, 599
Hsp92II	CATG	4 cut(s)	184, 412, 506, 621
Kzo9I	GATC	4 cut(s)	220, 420, 544, 607
LmnI	GCTCC	1 cut(s)	460
LpnPI	CCDG	7 cut(s)	377, 413, 443, 470, 520, 533, 601
Lsp1109I	GCAGC	2 cut(s)	47, 458
MaeI	CTAG	2 cut(s)	38, 492
MaeII	ACGT	3 cut(s)	90, 577, 599
MaeIII	GTNAC	2 cut(s)	40, 176
MalI	GATC	4 cut(s)	222, 422, 546, 609
MboI	GATC	4 cut(s)	220, 420, 544, 607
MboII	GAAGA	5 cut(s)	84, 156, 221, 230, 617
MhlI	GDGCHC	2 cut(s)	230, 486
MluCI	AATT	2 cut(s)	487, 631
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	3 cut(s)	72, 333, 402
MnlI	CCTC	9 cut(s)	50, 172, 241, 280, 333, 442, 488, 555, 616
MslI	CAYNNNNRTG	3 cut(s)	362, 501, 504
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	458
MwoI	GCNNNNNNNGC	1 cut(s)	409
NdeII	GATC	4 cut(s)	220, 420, 544, 607
NlaIII	CATG	4 cut(s)	184, 412, 506, 621
NmuCI	GTSAC	2 cut(s)	40, 176
PaeR7I	CTCGAG	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PfeI	GAWTC	4 cut(s)	287, 298, 374, 583
Pfl23II	CGTACG	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	456
PkrI	GCNGC	2 cut(s)	62, 473
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	578
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspLI	CGTACG	1 cut(s)	574
PspPI	GGNCC	1 cut(s)	405
PspXI	VCTCGAGB	1 cut(s)	479
RsaI	GTAC	1 cut(s)	576
RsaNI	GTAC	1 cut(s)	575
RseI	CAYNNNNRTG	3 cut(s)	362, 501, 504
SacI	GAGCTC	1 cut(s)	486
SalI	GTCGAC	1 cut(s)	203
SatI	GCNGC	2 cut(s)	61, 472
Sau3AI	GATC	4 cut(s)	220, 420, 544, 607
Sau96I	GGNCC	1 cut(s)	405
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	458
SduI	GDGCHC	2 cut(s)	230, 486
Sfr274I	CTCGAG	1 cut(s)	479
SinI	GGWCC	1 cut(s)	405
SlaI	CTCGAG	1 cut(s)	479
SmiMI	CAYNNNNRTG	3 cut(s)	362, 501, 504
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	2 cut(s)	487, 631
SsiI	CCGC	4 cut(s)	63, 105, 335, 403
SspMI	CTAG	2 cut(s)	38, 492
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	456
StyI	CCWWGG	1 cut(s)	444
TaaI	ACNGT	3 cut(s)	202, 265, 305
TaiI	ACGT	3 cut(s)	93, 580, 602
TaqI	TCGA	3 cut(s)	204, 348, 480
TasI	AATT	2 cut(s)	487, 631
TfiI	GAWTC	4 cut(s)	287, 298, 374, 583
TscAI	CASTG	2 cut(s)	230, 308
TseFI	GTSAC	2 cut(s)	40, 176
TseI	GCWGC	2 cut(s)	60, 471
Tsp45I	GTSAC	2 cut(s)	40, 176
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	2 cut(s)	230, 308
VneI	GTGCAC	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	405
XbaI	TCTAGA	1 cut(s)	491
XhoI	CTCGAG	1 cut(s)	479
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	2 cut(s)	38, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.