Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

9894919 .. 9895641

Gene Structure 723 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g10650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACTCCTAACAAATTCATACACTACACCCGCCTCTTTCGTTCCCACACATTTCTATTCATTACTGAAAAGGACTCCTACCAACAATACTTTCCCACCCATAAATCTCCCCCTCTCTCTCTCTGCGAGCAAATCATAAGGAGTCTCTATATCTCCTTAATGTCTTCTTCCAGCAAAAACAAGCTCCTCACTACCATTCTCACAGCCAATATTCCAGGCTGCGATTGCCGCAGGCCGAAGCTCTCTGACGTATACGAGCCAACCCCAAAACCCAAAATCCAAATCCACAAAAACCCTATTCACCGATCCCACTCCTCTTCAAGTTCCGGTGATCAAAATGGCAAGAGTGTCACCGTTGACGACGACGAAGATCAGTGCACCTCCACCACCGTCTCTTTCAACAACTCGTCCTCACAGTCAAAGCCATTCGATTCAGCAGAGAGTACGAATCCGAAGAACACAAAGATTTCAAGCCCGAATACAACGAAAACCAGCGGCAGCATTGCGGTGGTGAAGGAATCAAACGACCCGTATCAGGATTTCAGGCAGTCGATGCTGCAGATGATTGTGGAGAAGCAGATTTACTGGAAGGAGGATCTGCAGGAGCTGCTCCGCTGCTTTCTGGAACTCAACTCTCCGTCCCACCACGATGTTATCATCCGAGCATTCACACAAATCTGGAACGATCTGATCAGAGAAAGCAAGAAGCCGATGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

241

Amino Acids

27.48

Weight (kDa)

8.72

Isoelectric Point (pI)

61.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	174 - 230	8.6e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	5 cut(s)	31, 229, 495, 506, 613
AclWI	GGATC	2 cut(s)	300, 603
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	321, 400, 471
AjnI	CCWGG	1 cut(s)	214
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	184, 241, 607
AluI	AGCT	3 cut(s)	184, 241, 607
Alw21I	GWGCWC	1 cut(s)	380
Alw26I	GTCTC	2 cut(s)	149, 397
Alw44I	GTGCAC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	300, 603
AlwNI	CAGNNNCTG	1 cut(s)	607
AoxI	GGCC	1 cut(s)	233
ApaLI	GTGCAC	1 cut(s)	376
ApeKI	GCWGC	5 cut(s)	219, 498, 556, 607, 615
ApoI	RAATTY	1 cut(s)	14
AsuHPI	GGTGA	4 cut(s)	293, 341, 343, 523
BaeGI	GKGCMC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	380
BbvI	GCAGC	5 cut(s)	206, 510, 543, 594, 602
BciT130I	CCWGG	1 cut(s)	216
BclI	TGATCA	3 cut(s)	331, 690, 714
BcoDI	GTCTC	2 cut(s)	149, 397
BfmI	CTRYAG	2 cut(s)	557, 599
BisI	GCNGC	7 cut(s)	220, 229, 496, 499, 557, 608, 616
BlsI	GCNGC	7 cut(s)	221, 230, 497, 500, 558, 609, 617
Bme1390I	CCNGG	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	216
BmsI	GCATC	1 cut(s)	543
BpiI	GAAGAC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	1 cut(s)	535
Bse1I	ACTGG	1 cut(s)	590
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	535
BseMI	GCAATG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	590
BseRI	GAGGAG	2 cut(s)	176, 304
BseSI	GKGCMC	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	206, 510, 543, 594, 602
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	380
BsiSI	CCGG	1 cut(s)	327
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	535
BsmAI	GTCTC	2 cut(s)	149, 397
BsmBI	CGTCTC	1 cut(s)	397
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	380
Bsp143I	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
BspACI	CCGC	5 cut(s)	31, 229, 495, 506, 613
BspANI	GGCC	1 cut(s)	235
BspMAI	CTGCAG	2 cut(s)	561, 603
BspPI	GGATC	2 cut(s)	300, 603
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	1 cut(s)	590
BssMI	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
BssNAI	GTATAC	1 cut(s)	253
Bst1107I	GTATAC	1 cut(s)	253
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	3 cut(s)	355, 391, 417
Bst6I	CTCTTC	1 cut(s)	322
BstAPI	GCANNNNNTGC	2 cut(s)	553, 607
BstC8I	GCNNGC	2 cut(s)	128, 233
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	7 cut(s)	308, 334, 373, 598, 688, 693, 717
BstMAI	GTCTC	2 cut(s)	149, 397
BstMBI	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
BstMWI	GCNNNNNNNGC	4 cut(s)	225, 228, 553, 607
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	2 cut(s)	557, 599
BstSLI	GKGCMC	1 cut(s)	380
BstV1I	GCAGC	5 cut(s)	206, 510, 543, 594, 602
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BstZ17I	GTATAC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	657
BtsIMutI	CAGTG	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	128, 233
CaiI	CAGNNNCTG	1 cut(s)	607
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	1 cut(s)	718
CviQI	GTAC	1 cut(s)	444
DpnI	GATC	7 cut(s)	307, 333, 372, 597, 687, 692, 716
DpnII	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	214
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	1 cut(s)	721
FaiI	YATR	6 cut(s)	20, 102, 137, 150, 253, 719
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	1 cut(s)	717
FauI	CCCGC	1 cut(s)	38
FbaI	TGATCA	3 cut(s)	331, 690, 714
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	7 cut(s)	220, 229, 496, 499, 557, 608, 616
FokI	GGATG	1 cut(s)	644
Fsp4HI	GCNGC	7 cut(s)	220, 229, 496, 499, 557, 608, 616
GluI	GCNGC	7 cut(s)	220, 229, 496, 499, 557, 608, 616
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	1 cut(s)	721
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	6 cut(s)	4, 74, 142, 431, 448, 518
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	4 cut(s)	293, 341, 343, 523
Hpy166II	GTNNAC	3 cut(s)	253, 358, 378
Hpy188I	TCNGA	5 cut(s)	247, 453, 662, 690, 695
Hpy188III	TCNNGA	3 cut(s)	536, 623, 679
Hpy8I	GTNNAC	3 cut(s)	253, 358, 378
Hpy99I	CGWCG	2 cut(s)	365, 368
HpyAV	CCTTC	2 cut(s)	508, 583
HpyCH4III	ACNGT	3 cut(s)	355, 391, 417
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	378, 559, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	225, 228, 553, 607
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	721
Ksp22I	TGATCA	3 cut(s)	331, 690, 714
Kzo9I	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
LmnI	GCTCC	3 cut(s)	189, 604, 615
Lsp1109I	GCAGC	5 cut(s)	206, 510, 543, 594, 602
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	7 cut(s)	307, 333, 372, 597, 687, 692, 716
MboI	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
MboII	GAAGA	5 cut(s)	156, 159, 309, 380, 466
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	380
MluCI	AATT	1 cut(s)	14
MlyI	GAGTC	2 cut(s)	68, 151
MnlI	CCTC	7 cut(s)	44, 123, 197, 325, 391, 421, 586
MseI	TTAA	1 cut(s)	158
MslI	CAYNNNNRTG	2 cut(s)	506, 648
MspA1I	CMGCKG	2 cut(s)	495, 615
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	665
MvaI	CCWGG	1 cut(s)	216
MwoI	GCNNNNNNNGC	4 cut(s)	225, 228, 553, 607
NdeII	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
NlaIII	CATG	1 cut(s)	721
NmuCI	GTSAC	1 cut(s)	349
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	3 cut(s)	431, 448, 518
PkrI	GCNGC	7 cut(s)	221, 230, 497, 500, 558, 609, 617
PleI	GAGTC	2 cut(s)	68, 150
PpsI	GAGTC	2 cut(s)	68, 150
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PstI	CTGCAG	2 cut(s)	561, 603
PstNI	CAGNNNCTG	1 cut(s)	607
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
RseI	CAYNNNNRTG	2 cut(s)	506, 648
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	7 cut(s)	220, 229, 496, 499, 557, 608, 616
Sau3AI	GATC	7 cut(s)	305, 331, 370, 595, 685, 690, 714
SchI	GAGTC	2 cut(s)	68, 151
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	380
SetI	ASST	5 cut(s)	186, 243, 252, 383, 609
SfaNI	GCATC	1 cut(s)	543
SfcI	CTRYAG	2 cut(s)	557, 599
SmiMI	CAYNNNNRTG	2 cut(s)	506, 648
Sse9I	AATT	1 cut(s)	14
SsiI	CCGC	5 cut(s)	31, 229, 495, 506, 613
SspI	AATATT	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	3 cut(s)	355, 391, 417
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	429, 551
TasI	AATT	1 cut(s)	14
TauI	GCSGC	2 cut(s)	231, 498
TfiI	GAWTC	3 cut(s)	431, 448, 518
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	1 cut(s)	380
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	5 cut(s)	219, 498, 556, 607, 615
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	7, 49
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	1 cut(s)	380
VneI	GTGCAC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.