Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

11315140 .. 11315757

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G139400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

AAAAAGCACAAGCTTATCAAAACCCTACTCATATCCAATATTGCAGGTTGTGGCTGTGGCAAGCCAAAGCTCTCAGATGTATATGAGCCAACTCCAAAACCCAAAACCCAAATCCCCCAAAACCCAACTCCACAACGACGTTCCTCTTCAAGCTCTTGTGACAAAAATGGCAGTTTCACTGTCGATGACGACGACGATGATAATGAGGACCAGTGCACCTCCACCACAATCTCCTTCAACAACAACTCCTCCTCACACCCGTCTGATTCATCAGAAAGCACAAATCCAAAGAACACCAAGTTCCCAAGCCCCAAGTGGACGAAGATCGACGACAGCATTGCTGTGGTGAAGGAATCCAACGATCCCTACCAAGACTTCAGGCAGTCTATGCTGCAGATGATCGTAGAGAAGCAGATTTATTCGAAGGAGGATCTGCAGGAGCTGCTCAGCTGCTTTCTTGAACTCAACTCTGCATCCCACCATGATGTTATTATCCAAGTTTTTACACAAATCTGGAATGATCTGATCAGAGAAAGTAAGAAACCGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

185

Amino Acids

20.75

Weight (kDa)

5.57

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	35
AclWI	GGATC	2 cut(s)	356, 438
AcuI	CTGAAG	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	150, 238, 461
AluBI	AGCT	5 cut(s)	13, 70, 153, 442, 450
AluI	AGCT	5 cut(s)	13, 70, 153, 442, 450
Alw21I	GWGCWC	1 cut(s)	218
Alw44I	GTGCAC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	356, 438
AlwNI	CAGNNNCTG	1 cut(s)	442
ApaLI	GTGCAC	1 cut(s)	214
ApeKI	GCWGC	3 cut(s)	391, 442, 450
AspS9I	GGNCC	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	358
AsuII	TTCGAA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	208
BaeGI	GKGCMC	1 cut(s)	218
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	3 cut(s)	378, 429, 437
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BclI	TGATCA	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	392, 434
BfuAI	ACCTGC	1 cut(s)	35
BisI	GCNGC	3 cut(s)	392, 443, 451
BlpI	GCTNAGC	1 cut(s)	446
BlsI	GCNGC	3 cut(s)	393, 444, 452
Bme18I	GGWCC	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	208
BmsI	GCATC	1 cut(s)	482
Bpu1102I	GCTNAGC	1 cut(s)	446
Bpu14I	TTCGAA	1 cut(s)	422
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 233, 260, 263
Bse1I	ACTGG	1 cut(s)	211
Bse3DI	GCAATG	1 cut(s)	336
BseGI	GGATG	1 cut(s)	473
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	2 cut(s)	87, 460
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	2 cut(s)	238, 241
BseSI	GKGCMC	1 cut(s)	218
BseXI	GCAGC	3 cut(s)	378, 429, 437
BsiHKAI	GWGCWC	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
Bsp1720I	GCTNAGC	1 cut(s)	446
BspCNI	CTCAG	2 cut(s)	86, 459
BspMAI	CTGCAG	2 cut(s)	396, 438
BspMI	ACCTGC	1 cut(s)	35
BspPI	GGATC	2 cut(s)	356, 438
BspT104I	TTCGAA	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	211
BssMI	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	2 cut(s)	388, 442
BstBI	TTCGAA	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	2 cut(s)	73, 446
BstF5I	GGATG	1 cut(s)	473
BstKTI	GATC	7 cut(s)	327, 364, 402, 433, 523, 528, 549
BstMBI	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
BstMWI	GCNNNNNNNGC	2 cut(s)	388, 442
BstSFI	CTRYAG	2 cut(s)	392, 434
BstSLI	GKGCMC	1 cut(s)	218
BstV1I	GCAGC	3 cut(s)	378, 429, 437
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	177, 218
BveI	ACCTGC	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	208
CviAII	CATG	2 cut(s)	482, 550
CviJI	RGCY	9 cut(s)	13, 54, 64, 70, 88, 153, 309, 442, 450
CviKI_1	RGCY	9 cut(s)	13, 54, 64, 70, 88, 153, 309, 442, 450
DdeI	CTNAG	2 cut(s)	73, 446
DpnI	GATC	7 cut(s)	326, 363, 401, 432, 522, 527, 548
DpnII	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	361
FaeI	CATG	2 cut(s)	485, 553
FaiI	YATR	6 cut(s)	32, 82, 84, 389, 483, 551
FatI	CATG	2 cut(s)	481, 549
FbaI	TGATCA	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	392, 443, 451
FokI	GGATG	1 cut(s)	460
Fsp4HI	GCNGC	3 cut(s)	392, 443, 451
GluI	GCNGC	3 cut(s)	392, 443, 451
Hin1II	CATG	2 cut(s)	485, 553
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	2 cut(s)	266, 353
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	216, 318
Hpy188I	TCNGA	5 cut(s)	76, 265, 274, 525, 530
Hpy188III	TCNNGA	2 cut(s)	458, 514
Hpy8I	GTNNAC	2 cut(s)	216, 318
Hpy99I	CGWCG	4 cut(s)	141, 194, 197, 332
HpyAV	CCTTC	3 cut(s)	244, 343, 418
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	5 cut(s)	44, 216, 394, 436, 473
HpyF10VI	GCNNNNNNNGC	2 cut(s)	388, 442
HpyF3I	CTNAG	2 cut(s)	73, 446
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	485, 553
Ksp22I	TGATCA	1 cut(s)	525
Kzo9I	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	5 cut(s)	30, 224, 364, 422, 499
Lsp1109I	GCAGC	3 cut(s)	378, 429, 437
LweI	GCATC	1 cut(s)	482
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	7 cut(s)	326, 363, 401, 432, 522, 527, 548
MboI	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
MboII	GAAGA	2 cut(s)	138, 334
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	381
MnlI	CCTC	6 cut(s)	154, 199, 229, 259, 262, 421
MslI	CAYNNNNRTG	2 cut(s)	341, 483
MspA1I	CMGCKG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	388, 442
NdeII	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
NlaIII	CATG	2 cut(s)	485, 553
NmuCI	GTSAC	1 cut(s)	158
NspV	TTCGAA	1 cut(s)	422
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	266, 353
PkrI	GCNGC	3 cut(s)	393, 444, 452
PspPI	GGNCC	1 cut(s)	208
PstI	CTGCAG	2 cut(s)	396, 438
PstNI	CAGNNNCTG	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	430
PvuII	CAGCTG	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	341, 483
SatI	GCNGC	3 cut(s)	392, 443, 451
Sau3AI	GATC	7 cut(s)	324, 361, 399, 430, 520, 525, 546
Sau96I	GGNCC	1 cut(s)	208
SduI	GDGCHC	1 cut(s)	218
SetI	ASST	8 cut(s)	15, 49, 72, 142, 155, 221, 444, 452
SfaNI	GCATC	1 cut(s)	482
SfcI	CTRYAG	2 cut(s)	392, 434
SfuI	TTCGAA	1 cut(s)	422
SinI	GGWCC	1 cut(s)	208
SmiMI	CAYNNNNRTG	2 cut(s)	341, 483
SspI	AATATT	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	3 cut(s)	183, 327, 422
TfiI	GAWTC	2 cut(s)	266, 353
TscAI	CASTG	2 cut(s)	184, 218
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	391, 442, 450
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	184, 218
VneI	GTGCAC	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.