Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

19112973 .. 19113548

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1172500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCTTCATCCAGCAAAAAGAAGAAGCTTCTTACAACCATTCTCACAGCCAATGTTGCAGGCTGCGGTTGCGGAAGGCCGAAGCTTTCCGACGTGTACGAGCCGACTCCAAAACCCAAAATCCAAATCCACAAAAACCCTATTCACCGATCCCTCTCCTCTTCAAGTTCCGGCGATCAAAATGGCAAGAGCTTCACAGTTGAGGACGACGACGAAGATCGGTGCACCTCTACCACCGTTTCTTTTAACAACAACTCCTCCTCCTCGCAGTCACACCCATCTGATTCGGCGGAGAGTACGAATCCTAAGAACACAAAGATTTCGAGCCCGAATACGATGAAAGTCCACGACAGCATTGCGGTGGTGAAGGAATCAAACGACCCTTATAAGGATTTCAGGCAGTCGATGCTGCAGATGATTGTGGAGAAGCAGATTTACTCGAAGGACGATCTGCAGGAGCTGCTCAGCTGCTTTCTGGAGCTCAACTCTGCATCCCATCACGATGTTATCATCCGAGCATTCACACAAATCTGGAACGATCTCATCAGAGAAAGCGAGAAGCCGATGATCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

192

Amino Acids

21.27

Weight (kDa)

6.59

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	125 - 181	4.2e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
AciI	CCGC	4 cut(s)	66, 72, 290, 359
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	98, 298
AfiI	CCNNNNNNNGG	1 cut(s)	388
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	1 cut(s)	165
AjiI	CACGTC	1 cut(s)	94
AluBI	AGCT	6 cut(s)	28, 85, 192, 460, 468, 481
AluI	AGCT	6 cut(s)	28, 85, 192, 460, 468, 481
Alw21I	GWGCWC	2 cut(s)	227, 483
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	144
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	4 cut(s)	63, 409, 460, 468
AsuHPI	GGTGA	2 cut(s)	137, 376
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	329, 483
BarI	GAAGNNNNNNTAC	2 cut(s)	419, 451
Bbv12I	GWGCWC	2 cut(s)	227, 483
BbvI	GCAGC	4 cut(s)	50, 396, 447, 455
BccI	CCATC	2 cut(s)	286, 504
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BclI	TGATCA	1 cut(s)	567
BfmI	CTRYAG	2 cut(s)	410, 452
BisI	GCNGC	4 cut(s)	64, 410, 461, 469
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	4 cut(s)	65, 411, 462, 470
BmgBI	CACGTC	1 cut(s)	94
BmsI	GCATC	2 cut(s)	396, 500
BplI	GAGNNNNNCTC	2 cut(s)	470, 502
BpmI	CTGGAG	1 cut(s)	497
Bpu1102I	GCTNAGC	1 cut(s)	464
BsaXI	ACNNNNNCTCC	6 cut(s)	239, 242, 245, 269, 272, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse3DI	GCAATG	1 cut(s)	354
BseGI	GGATG	3 cut(s)	8, 491, 510
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	478
BseRI	GAGGAG	4 cut(s)	148, 247, 250, 253
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	4 cut(s)	50, 396, 447, 455
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	2 cut(s)	227, 483
BsiSI	CCGG	1 cut(s)	171
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	3 cut(s)	227, 329, 483
Bsp143I	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
Bsp1720I	GCTNAGC	1 cut(s)	464
BspACI	CCGC	4 cut(s)	66, 72, 290, 359
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	477
BspMAI	CTGCAG	2 cut(s)	414, 456
BspPI	GGATC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	354
BssMI	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
Bst4CI	ACNGT	2 cut(s)	199, 238
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	2 cut(s)	406, 460
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	306, 464
BstF5I	GGATG	3 cut(s)	8, 491, 510
BstKTI	GATC	6 cut(s)	152, 178, 220, 451, 541, 570
BstMBI	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 69, 406, 460
BstSFI	CTRYAG	2 cut(s)	410, 452
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	4 cut(s)	50, 396, 447, 455
BsuRI	GGCC	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	8, 491, 510
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	460
Csp6I	GTAC	2 cut(s)	97, 297
CviAII	CATG	1 cut(s)	571
CviQI	GTAC	2 cut(s)	97, 297
DdeI	CTNAG	2 cut(s)	306, 464
DpnI	GATC	6 cut(s)	151, 177, 219, 450, 540, 569
DpnII	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	2 cut(s)	329, 483
Eco53kI	GAGCTC	1 cut(s)	481
EcoICRI	GAGCTC	1 cut(s)	481
EcoT38I	GRGCYC	2 cut(s)	329, 483
FaeI	CATG	1 cut(s)	574
FaiI	YATR	2 cut(s)	387, 572
FatI	CATG	1 cut(s)	570
FbaI	TGATCA	1 cut(s)	567
Fnu4HI	GCNGC	4 cut(s)	64, 410, 461, 469
FokI	GGATG	2 cut(s)	478, 497
FriOI	GRGCYC	2 cut(s)	329, 483
Fsp4HI	GCNGC	4 cut(s)	64, 410, 461, 469
GluI	GCNGC	4 cut(s)	64, 410, 461, 469
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	171
Hin1II	CATG	1 cut(s)	574
HindIII	AAGCTT	2 cut(s)	26, 83
HinfI	GANTC	4 cut(s)	106, 284, 301, 371
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	137, 376
Hpy166II	GTNNAC	3 cut(s)	97, 225, 346
Hpy188I	TCNGA	4 cut(s)	91, 283, 515, 548
Hpy188III	TCNNGA	3 cut(s)	476, 500, 532
Hpy8I	GTNNAC	3 cut(s)	97, 225, 346
Hpy99I	CGWCG	3 cut(s)	95, 212, 215
HpyAV	CCTTC	3 cut(s)	69, 361, 436
HpyCH4III	ACNGT	2 cut(s)	199, 238
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	59, 225, 412, 454, 491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 69, 406, 460
HpyF3I	CTNAG	2 cut(s)	306, 464
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	574
Ksp22I	TGATCA	1 cut(s)	567
Kzo9I	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
LmnI	GCTCC	2 cut(s)	457, 478
LpnPI	CCDG	7 cut(s)	25, 45, 184, 382, 440, 461, 517
Lsp1109I	GCAGC	4 cut(s)	50, 396, 447, 455
LweI	GCATC	2 cut(s)	396, 500
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	270
MalI	GATC	6 cut(s)	151, 177, 219, 450, 540, 569
MboI	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
MboII	GAAGA	3 cut(s)	34, 153, 227
MhlI	GDGCHC	3 cut(s)	227, 329, 483
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	7 cut(s)	164, 169, 196, 238, 268, 271, 274
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	2 cut(s)	359, 501
MspA1I	CMGCKG	1 cut(s)	468
MspI	CCGG	1 cut(s)	171
Mva1269I	GAATGC	1 cut(s)	518
MwoI	GCNNNNNNNGC	4 cut(s)	56, 69, 406, 460
NdeII	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
NlaIII	CATG	1 cut(s)	574
NmuCI	GTSAC	1 cut(s)	270
PctI	GAATGC	1 cut(s)	518
PfeI	GAWTC	3 cut(s)	284, 301, 371
PkrI	GCNGC	4 cut(s)	65, 411, 462, 470
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PsiI	TTATAA	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	483
PstI	CTGCAG	2 cut(s)	414, 456
PstNI	CAGNNNCTG	1 cut(s)	460
PvuII	CAGCTG	1 cut(s)	468
RsaI	GTAC	2 cut(s)	98, 298
RsaNI	GTAC	2 cut(s)	97, 297
RseI	CAYNNNNRTG	2 cut(s)	359, 501
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	4 cut(s)	64, 410, 461, 469
Sau3AI	GATC	6 cut(s)	149, 175, 217, 448, 538, 567
SchI	GAGTC	1 cut(s)	100
SduI	GDGCHC	3 cut(s)	227, 329, 483
SetI	ASST	8 cut(s)	30, 87, 96, 194, 230, 462, 470, 483
SfaNI	GCATC	2 cut(s)	396, 500
SfcI	CTRYAG	2 cut(s)	410, 452
SmiMI	CAYNNNNRTG	2 cut(s)	359, 501
SsiI	CCGC	4 cut(s)	66, 72, 290, 359
SstI	GAGCTC	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	199, 238
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	323, 404, 440
TfiI	GAWTC	3 cut(s)	284, 301, 371
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	4 cut(s)	63, 409, 460, 468
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.