Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Forward (+)

12963594 .. 12964432

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G098400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCTACAACCAGAAGAAAGCTCCTGAACAAAGTTACAGTGGACATAGGTTGCAGCAACTGCAGAAAACCAAAACTCTTCCACATATTCCATCCAAAGCCAAAACCCACCACAACCCAAAAACAAAAGTACCACCACCATAACAATTTCTCTTCATCTTCGAGCTCATGCAACAAAGTCTACAAAGCCAACAACAACGCCACCACATTCTCTCCAAACACAGACTATGCTCCATTTTTGGACACAGAGGTCAAGCCAAAGAGCGCAAGAGCCGTCCAAGGTTTTGGGAGAATTGGCAACGAGAGTGTGGCCGTGGAGAAAGACTCAGGCGATCCTTACTTGGATTTTCGACACTCGATGCTCCAAATGATACTGGAAAACGAAATATACGCAAAAGACGATCTCAGAGAGCTTCTCAACTGTTTCTTGCAGCTCAACGCACCTTGCAACCATGGAATTATTATCAGAGTTTTCACTGAGATCTGGAATGCTGTTTTCTCAGTGAGGTCGTCTGGTTCAACAATGCTGCATTTTCCTCGCAAGTCACGTGACTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

186

Amino Acids

21.15

Weight (kDa)

9.51

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	180
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	309
AcvI	CACGTG	1 cut(s)	548
AfaI	GTAC	1 cut(s)	131
AgsI	TTSAA	1 cut(s)	519
AluBI	AGCT	4 cut(s)	22, 165, 412, 433
AluI	AGCT	4 cut(s)	22, 165, 412, 433
Alw21I	GWGCWC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	3 cut(s)	54, 430, 526
AspLEI	GCGC	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	113, 146
BanII	GRGCYC	1 cut(s)	167
BbrPI	CACGTG	1 cut(s)	548
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	66, 442, 513
BccI	CCATC	1 cut(s)	99
BceAI	ACGGC	2 cut(s)	257, 296
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BfaI	CTAG	1 cut(s)	556
BfmI	CTRYAG	1 cut(s)	61
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	3 cut(s)	55, 431, 527
BlsI	GCNGC	3 cut(s)	56, 432, 528
BmsI	GCATC	1 cut(s)	348
BplI	GAGNNNNNCTC	4 cut(s)	308, 340, 399, 431
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	277, 312, 451
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bse1I	ACTGG	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	277, 312, 451
BseGI	GGATG	1 cut(s)	91
BseMII	CTCAG	4 cut(s)	339, 418, 468, 513
BseNI	ACTGG	1 cut(s)	378
BseXI	GCAGC	3 cut(s)	66, 442, 513
BshFI	GGCC	1 cut(s)	311
BsiHKAI	GWGCWC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	331, 400, 480
Bsp19I	CCATGG	1 cut(s)	451
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	4 cut(s)	338, 417, 469, 512
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	378
BssECI	CCNNGG	3 cut(s)	277, 312, 451
BssMI	GATC	3 cut(s)	331, 400, 480
BssT1I	CCWWGG	2 cut(s)	277, 451
Bst4CI	ACNGT	2 cut(s)	40, 422
Bst6I	CTCTTC	2 cut(s)	83, 157
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	548
BstDEI	CTNAG	4 cut(s)	325, 404, 477, 499
BstDSI	CCRYGG	2 cut(s)	312, 451
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	3 cut(s)	334, 403, 483
BstMBI	GATC	3 cut(s)	331, 400, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	3 cut(s)	66, 442, 513
BstX2I	RGATCY	1 cut(s)	480
BstXI	CCANNNNNNTGG	1 cut(s)	284
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	311
BtgI	CCRYGG	2 cut(s)	312, 451
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	45, 474, 507
CaiI	CAGNNNCTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	2 cut(s)	168, 452
CviJI	RGCY	9 cut(s)	22, 100, 165, 188, 256, 272, 311, 412, 433
CviKI_1	RGCY	9 cut(s)	22, 100, 165, 188, 256, 272, 311, 412, 433
CviQI	GTAC	1 cut(s)	130
DdeI	CTNAG	4 cut(s)	325, 404, 477, 499
DpnI	GATC	3 cut(s)	333, 402, 482
DpnII	GATC	3 cut(s)	331, 400, 480
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
EaeI	YGGCCR	1 cut(s)	309
Eam1104I	CTCTTC	2 cut(s)	83, 157
EarI	CTCTTC	2 cut(s)	83, 157
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	277, 451
Eco24I	GRGCYC	1 cut(s)	167
Eco53kI	GAGCTC	1 cut(s)	165
Eco72I	CACGTG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	165
EcoT14I	CCWWGG	2 cut(s)	277, 451
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	277, 451
FaeI	CATG	2 cut(s)	171, 455
FaiI	YATR	7 cut(s)	47, 86, 141, 169, 228, 388, 453
FatI	CATG	2 cut(s)	167, 451
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	3 cut(s)	55, 431, 527
FokI	GGATG	1 cut(s)	78
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	55, 431, 527
FspBI	CTAG	1 cut(s)	556
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	3 cut(s)	55, 431, 527
HaeIII	GGCC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	2 cut(s)	171, 455
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	323
Hpy166II	GTNNAC	2 cut(s)	43, 181
Hpy188I	TCNGA	2 cut(s)	407, 467
Hpy188III	TCNNGA	2 cut(s)	25, 484
Hpy8I	GTNNAC	2 cut(s)	43, 181
HpyCH4III	ACNGT	2 cut(s)	40, 422
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	6 cut(s)	54, 63, 171, 430, 447, 529
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	4 cut(s)	325, 404, 477, 499
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	171, 455
HspAI	GCGC	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	331, 400, 480
LmnI	GCTCC	3 cut(s)	27, 235, 366
LpnPI	CCDG	6 cut(s)	25, 38, 312, 359, 469, 498
Lsp1109I	GCAGC	3 cut(s)	66, 442, 513
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	556
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	34, 543, 548
MalI	GATC	3 cut(s)	333, 402, 482
MboI	GATC	3 cut(s)	331, 400, 480
MboII	GAAGA	4 cut(s)	27, 70, 144, 150
MflI	RGATCY	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	3 cut(s)	145, 291, 456
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	3 cut(s)	241, 498, 546
Mva1269I	GAATGC	1 cut(s)	493
MwoI	GCNNNNNNNGC	1 cut(s)	60
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	3 cut(s)	331, 400, 480
NlaIII	CATG	2 cut(s)	171, 455
NmuCI	GTSAC	2 cut(s)	543, 548
PcsI	WCGNNNNNNNCGW	2 cut(s)	396, 544
PctI	GAATGC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	56, 432, 528
PleI	GAGTC	1 cut(s)	317
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	1 cut(s)	317
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	167
PspCI	CACGTG	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	480
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	3 cut(s)	55, 431, 527
Sau3AI	GATC	3 cut(s)	331, 400, 480
SchI	GAGTC	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	167
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	145, 291, 456
SspMI	CTAG	1 cut(s)	556
SstI	GAGCTC	1 cut(s)	167
StyI	CCWWGG	2 cut(s)	277, 451
TaaI	ACNGT	2 cut(s)	40, 422
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	3 cut(s)	161, 349, 356
TasI	AATT	3 cut(s)	145, 291, 456
TscAI	CASTG	3 cut(s)	45, 481, 507
TseFI	GTSAC	2 cut(s)	543, 548
TseI	GCWGC	3 cut(s)	54, 430, 526
Tsp45I	GTSAC	2 cut(s)	543, 548
TspDTI	ATGAA	1 cut(s)	144
TspRI	CASTG	3 cut(s)	45, 481, 507
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.