Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

2871902 .. 2872473

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCCTACAACAACCAGAAGAAAGCTCCGGTTGAGCAAAGTCACGGTCGACATAGGATGCAGCTGCAGAAAACCTATTAAGCTCTTCCAAATATTCCACCCTAAACCTAAACCCTCCTCCAAAACCCTAAAACAAAACAAGTACAACCACTTCCCTCATCCTTCTTCTTCTTCTTCTTCAACCCCAAGCAACAATAACAACAACAACAAAGTCTACAAAGACGACTGTGCTCCATTTTTAGTCACAAATTCCGACGCAAAAGCCACGAGACCCGTCAGGGGCTTCGGTAGAATCGGCAACGAGAGCGTGGCTGTGGAGAAAGACTCCGAACGAGATATACTCGAAAGACGATCGATCCGGGAGCTTCTCAACTGTTTCCTGCAGCTCAACTCGCCCTGCAACCACGGCATTATTATCAGGGCCTTCACAGTTGATCGATCTGGAATGCTGTTTTCTCTGTCAGGTCTGGACGTTCGACGTTGCTGCACTTTGCGAGCAACAAGTCACATGACTACTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

174

Amino Acids

19.45

Weight (kDa)

10.1

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 213
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	1 cut(s)	180
AluBI	AGCT	6 cut(s)	25, 63, 82, 364, 385, 519
AluI	AGCT	6 cut(s)	25, 63, 82, 364, 385, 519
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	262
AlwI	GGATC	1 cut(s)	349
AoxI	GGCC	1 cut(s)	420
ApeKI	GCWGC	4 cut(s)	60, 63, 382, 483
ApoI	RAATTY	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspS9I	GGNCC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BauI	CACGAG	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	50, 72, 394, 470
BceAI	ACGGC	1 cut(s)	421
BcgI	CGANNNNNNTGC	2 cut(s)	465, 499
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	1 cut(s)	262
BfaI	CTAG	1 cut(s)	516
BfmI	CTRYAG	2 cut(s)	64, 380
BisI	GCNGC	4 cut(s)	61, 64, 383, 484
BlsI	GCNGC	4 cut(s)	62, 65, 384, 485
Bme1390I	CCNGG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	420
BmrFI	CCNGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	47
BplI	GAGNNNNNCTC	4 cut(s)	308, 340, 324, 356
BpuMI	CCSGG	1 cut(s)	359
Bsa29I	ATCGAT	2 cut(s)	353, 436
BsaI	GGTCTC	1 cut(s)	262
BsaJI	CCNNGG	1 cut(s)	403
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseCI	ATCGAT	2 cut(s)	353, 436
BseDI	CCNNGG	1 cut(s)	403
BseGI	GGATG	2 cut(s)	62, 157
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	4 cut(s)	50, 72, 394, 470
BsgI	GTGCAG	1 cut(s)	469
Bsh1285I	CGRYCG	2 cut(s)	48, 353
BshFI	GGCC	1 cut(s)	422
BshVI	ATCGAT	2 cut(s)	353, 436
BsiEI	CGRYCG	2 cut(s)	48, 353
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	28, 358
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	1 cut(s)	422
Bso31I	GGTCTC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp143I	GATC	4 cut(s)	350, 354, 433, 437
BspANI	GGCC	1 cut(s)	422
BspDI	ATCGAT	2 cut(s)	353, 436
BspMAI	CTGCAG	2 cut(s)	68, 384
BspPI	GGATC	1 cut(s)	349
BspQI	GCTCTTC	1 cut(s)	89
BspTNI	GGTCTC	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	403
BssMI	GATC	4 cut(s)	350, 354, 433, 437
BssSI	CACGAG	1 cut(s)	265
Bst2BI	CACGAG	1 cut(s)	265
Bst4CI	ACNGT	4 cut(s)	46, 227, 374, 430
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	495
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	2 cut(s)	62, 157
BstKTI	GATC	4 cut(s)	353, 357, 436, 440
BstMAI	GTCTC	1 cut(s)	262
BstMBI	GATC	4 cut(s)	350, 354, 433, 437
BstMCI	CGRYCG	2 cut(s)	48, 353
BstMWI	GCNNNNNNNGC	3 cut(s)	303, 391, 405
BstSCI	CCNGG	1 cut(s)	357
BstSFI	CTRYAG	2 cut(s)	64, 380
BstV1I	GCAGC	4 cut(s)	50, 72, 394, 470
Bsu15I	ATCGAT	2 cut(s)	353, 436
BsuRI	GGCC	1 cut(s)	422
BsuTUI	ATCGAT	2 cut(s)	353, 436
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	2 cut(s)	62, 157
Cac8I	GCNNGC	1 cut(s)	495
Cfr13I	GGNCC	1 cut(s)	420
ClaI	ATCGAT	2 cut(s)	353, 436
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	142
CviAII	CATG	1 cut(s)	508
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	4 cut(s)	352, 356, 435, 439
DpnII	GATC	4 cut(s)	350, 354, 433, 437
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	262
EcoO109I	RGGNCCY	1 cut(s)	420
FaeI	CATG	1 cut(s)	511
FaiI	YATR	3 cut(s)	53, 338, 509
FatI	CATG	1 cut(s)	507
FblI	GTMKAC	2 cut(s)	48, 213
Fnu4HI	GCNGC	4 cut(s)	61, 64, 383, 484
FokI	GGATG	2 cut(s)	69, 144
Fsp4HI	GCNGC	4 cut(s)	61, 64, 383, 484
FspBI	CTAG	1 cut(s)	516
GluI	GCNGC	4 cut(s)	61, 64, 383, 484
HaeIII	GGCC	1 cut(s)	422
HapII	CCGG	2 cut(s)	28, 358
HgaI	GACGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	511
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	291, 323
HpaII	CCGG	2 cut(s)	28, 358
Hpy166II	GTNNAC	2 cut(s)	49, 214
Hpy188I	TCNGA	2 cut(s)	253, 328
Hpy188III	TCNNGA	2 cut(s)	441, 467
Hpy8I	GTNNAC	2 cut(s)	49, 214
Hpy99I	CGWCG	2 cut(s)	257, 480
HpyAV	CCTTC	2 cut(s)	171, 433
HpyCH4III	ACNGT	4 cut(s)	46, 227, 374, 430
HpyCH4IV	ACGT	2 cut(s)	471, 478
HpyCH4V	TGCA	5 cut(s)	60, 66, 382, 399, 486
HpyF10VI	GCNNNNNNNGC	3 cut(s)	303, 391, 405
HpySE526I	ACGT	2 cut(s)	471, 478
Hsp92II	CATG	1 cut(s)	511
Kzo9I	GATC	4 cut(s)	350, 354, 433, 437
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	30, 235, 361
Lsp1109I	GCAGC	4 cut(s)	50, 72, 394, 470
LweI	GCATC	1 cut(s)	47
MaeI	CTAG	1 cut(s)	516
MaeII	ACGT	2 cut(s)	471, 478
MaeIII	GTNAC	3 cut(s)	40, 241, 503
MalI	GATC	4 cut(s)	352, 356, 435, 439
MboI	GATC	4 cut(s)	350, 354, 433, 437
MboII	GAAGA	7 cut(s)	30, 76, 156, 159, 162, 165, 168
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	1 cut(s)	317
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	124, 127, 165
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	2 cut(s)	28, 358
MspR9I	CCNGG	1 cut(s)	359
Mva1269I	GAATGC	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	303, 391, 405
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	350, 354, 433, 437
NlaIII	CATG	1 cut(s)	511
NmuCI	GTSAC	3 cut(s)	40, 241, 503
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	291
PfoI	TCCNGGA	1 cut(s)	357
PkrI	GCNGC	4 cut(s)	62, 65, 384, 485
Ple19I	CGATCG	1 cut(s)	353
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	420
PsrI	GAACNNNNNNTAC	2 cut(s)	321, 353
PstI	CTGCAG	2 cut(s)	68, 384
PvuI	CGATCG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	4 cut(s)	61, 64, 383, 484
Sau3AI	GATC	4 cut(s)	350, 354, 433, 437
Sau96I	GGNCC	1 cut(s)	420
SchI	GAGTC	1 cut(s)	317
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	2 cut(s)	64, 380
Sse9I	AATT	1 cut(s)	247
SspI	AATATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	46, 227, 374, 430
TaiI	ACGT	2 cut(s)	474, 481
TaqI	TCGA	5 cut(s)	48, 342, 353, 436, 475
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	3 cut(s)	40, 241, 503
TseI	GCWGC	4 cut(s)	60, 63, 382, 483
Tsp45I	GTSAC	3 cut(s)	40, 241, 503
XapI	RAATTY	1 cut(s)	247
XmiI	GTMKAC	2 cut(s)	48, 213
XspI	CTAG	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.