Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Forward (+)

49384113 .. 49384739

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00034110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTTCTAGCAAAAATAACAAGTTTCTGAAAACCCTAGTCACATCCAGTATTCGAGGCTGTGGTTGTGGAAGACCGAAGCTCTCAGACGTTTTTGAACCAACCCCAAAACCCAAAATCCCCATTTCCAAAACCACCCCAAATCATCAACCCCATTCCTCTTCAAGTTCTTGTGACATAAGAAATGGAAGTTTCACAGTCGACGACGATGACGAGGATCAGTGCACGTCCACTACCATCTCTCTCAACAACGACTCAACATTATCTTCATCCCAACCTTCAGATTCAGCAGAGACTCAGGGTGTAAAGAAGTCAAAGCCTCTGAGCCCACCTTTGACCAAAATCAACAACAGCATTGCCGTAGTGAAAGATTCCGATGACCCTTATCAGGATTTCCGGCAGTCCATGCTTCAAATGATCGTAGAGAAGGAGATTTATTCCAAGGAGGAGCTCCAGGAGCTGCTGAGCTGCTTCCTCGAACTCAATTCCAGACGTCACCATGATGTTATCATTGAAGCCTTCACAGAAATATGGAATGGTGATCTGGTTGATATTGCAGGAAAACGAATCGTACGTGTGAATCCCAGATGTGGAACGTGTGAAGATCATAGCCATGTGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

5.97

Isoelectric Point (pI)

53.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	125 - 179	1.1e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	496
AccI	GTMKAC	1 cut(s)	201
AclWI	GGATC	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	264
AcyI	GRCGYC	1 cut(s)	493
AfaI	GTAC	1 cut(s)	573
AfiI	CCNNNNNNNGG	2 cut(s)	388, 590
AflIII	ACRYGT	2 cut(s)	574, 596
AgsI	TTSAA	4 cut(s)	98, 165, 413, 515
AjiI	CACGTC	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	4 cut(s)	82, 451, 460, 468
AluI	AGCT	4 cut(s)	82, 451, 460, 468
Alw21I	GWGCWC	2 cut(s)	227, 453
Alw26I	GTCTC	1 cut(s)	287
Alw44I	GTGCAC	1 cut(s)	223
AlwI	GGATC	1 cut(s)	225
AlwNI	CAGNNNCTG	1 cut(s)	460
ApaLI	GTGCAC	1 cut(s)	223
ApeKI	GCWGC	2 cut(s)	460, 468
AsuHPI	GGTGA	2 cut(s)	488, 551
BaeGI	GKGCMC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	329, 453
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	227, 453
BbvI	GCAGC	2 cut(s)	447, 455
BccI	CCATC	1 cut(s)	245
BceAI	ACGGC	1 cut(s)	344
BciT130I	CCWGG	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	9, 38
BisI	GCNGC	2 cut(s)	461, 469
BlpI	GCTNAGC	1 cut(s)	464
BlsI	GCNGC	2 cut(s)	462, 470
Bme1390I	CCNGG	1 cut(s)	455
BmgBI	CACGTC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	455
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	437
Bpu1102I	GCTNAGC	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	575
BsaHI	GRCGYC	1 cut(s)	493
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 590
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	2 cut(s)	44, 269
BseLI	CCNNNNNNNGG	2 cut(s)	388, 590
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	4 cut(s)	99, 311, 314, 455
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	461
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	447, 455
BsiHKAI	GWGCWC	2 cut(s)	227, 453
BsiSI	CCGG	1 cut(s)	397
BsiWI	CGTACG	1 cut(s)	571
BslI	CCNNNNNNNGG	2 cut(s)	388, 590
BsmAI	GTCTC	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	227, 329, 453
Bsp143I	GATC	4 cut(s)	217, 417, 541, 604
Bsp1720I	GCTNAGC	1 cut(s)	464
BspCNI	CTCAG	4 cut(s)	98, 310, 315, 456
BspPI	GGATC	1 cut(s)	225
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	4 cut(s)	217, 417, 541, 604
BssNI	GRCGYC	1 cut(s)	493
BssT1I	CCWWGG	1 cut(s)	441
Bst2UI	CCWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	493
BstAPI	GCANNNNNTGC	1 cut(s)	406
BstBAI	YACGTR	1 cut(s)	575
BstDEI	CTNAG	4 cut(s)	85, 297, 323, 464
BstF5I	GGATG	2 cut(s)	44, 269
BstKTI	GATC	4 cut(s)	220, 420, 544, 607
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	4 cut(s)	217, 417, 541, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 457
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstSLI	GKGCMC	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	447, 455
BstV2I	GAAGAC	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	44, 269
BtsIMutI	CAGTG	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	572
CviAII	CATG	3 cut(s)	406, 500, 614
CviJI	RGCY	9 cut(s)	60, 82, 319, 327, 451, 460, 468, 518, 612
CviKI_1	RGCY	9 cut(s)	60, 82, 319, 327, 451, 460, 468, 518, 612
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	4 cut(s)	85, 297, 323, 464
DpnI	GATC	4 cut(s)	219, 419, 543, 606
DpnII	GATC	4 cut(s)	217, 417, 541, 604
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	441
Eco24I	GRGCYC	2 cut(s)	329, 453
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	264
EcoICRI	GAGCTC	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	329, 453
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	3 cut(s)	409, 503, 617
FaiI	YATR	6 cut(s)	179, 407, 501, 532, 609, 615
FatI	CATG	3 cut(s)	405, 499, 613
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	461, 469
FokI	GGATG	2 cut(s)	31, 256
FriOI	GRGCYC	2 cut(s)	329, 453
Fsp4HI	GCNGC	2 cut(s)	461, 469
FspBI	CTAG	2 cut(s)	9, 38
GluI	GCNGC	2 cut(s)	461, 469
GsuI	CTGGAG	1 cut(s)	437
HapII	CCGG	1 cut(s)	397
Hin1I	GRCGYC	1 cut(s)	493
Hin1II	CATG	3 cut(s)	409, 503, 617
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	6 cut(s)	254, 284, 295, 371, 567, 580
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	2 cut(s)	488, 551
Hpy166II	GTNNAC	3 cut(s)	202, 225, 231
Hpy188I	TCNGA	5 cut(s)	30, 88, 283, 324, 376
Hpy188III	TCNNGA	2 cut(s)	389, 489
Hpy8I	GTNNAC	3 cut(s)	202, 225, 231
Hpy99I	CGWCG	2 cut(s)	206, 209
HpyAV	CCTTC	3 cut(s)	288, 421, 529
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	5 cut(s)	90, 227, 493, 574, 596
HpyCH4V	TGCA	2 cut(s)	225, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 457
HpyF3I	CTNAG	4 cut(s)	85, 297, 323, 464
HpySE526I	ACGT	5 cut(s)	90, 227, 493, 574, 596
Hsp92I	GRCGYC	1 cut(s)	493
Hsp92II	CATG	3 cut(s)	409, 503, 617
Kzo9I	GATC	4 cut(s)	217, 417, 541, 604
LmnI	GCTCC	3 cut(s)	448, 456, 457
Lsp1109I	GCAGC	2 cut(s)	447, 455
MaeI	CTAG	2 cut(s)	9, 38
MaeII	ACGT	5 cut(s)	90, 227, 493, 574, 596
MaeIII	GTNAC	3 cut(s)	40, 173, 494
MalI	GATC	4 cut(s)	219, 419, 543, 606
MboI	GATC	4 cut(s)	217, 417, 541, 604
MboII	GAAGA	4 cut(s)	84, 153, 258, 614
MhlI	GDGCHC	3 cut(s)	227, 329, 453
MluCI	AATT	1 cut(s)	484
MlyI	GAGTC	2 cut(s)	248, 289
MnlI	CCTC	7 cut(s)	50, 169, 208, 330, 439, 485, 612
MslI	CAYNNNNRTG	2 cut(s)	501, 612
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	2 cut(s)	406, 457
NdeII	GATC	4 cut(s)	217, 417, 541, 604
NlaIII	CATG	3 cut(s)	409, 503, 617
NmuCI	GTSAC	3 cut(s)	40, 173, 494
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 571
PfeI	GAWTC	4 cut(s)	284, 371, 567, 580
Pfl23II	CGTACG	1 cut(s)	571
PfoI	TCCNGGA	1 cut(s)	453
PkrI	GCNGC	2 cut(s)	462, 470
PleI	GAGTC	2 cut(s)	248, 289
PpsI	GAGTC	2 cut(s)	248, 289
Ppu21I	YACGTR	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspLI	CGTACG	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
RseI	CAYNNNNRTG	2 cut(s)	501, 612
SacI	GAGCTC	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	2 cut(s)	461, 469
Sau3AI	GATC	4 cut(s)	217, 417, 541, 604
SchI	GAGTC	2 cut(s)	248, 289
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	3 cut(s)	227, 329, 453
SmiMI	CAYNNNNRTG	2 cut(s)	501, 612
Sse9I	AATT	1 cut(s)	484
SspMI	CTAG	2 cut(s)	9, 38
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	5 cut(s)	93, 230, 496, 577, 599
TaqI	TCGA	3 cut(s)	55, 201, 477
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	484
TfiI	GAWTC	4 cut(s)	284, 371, 567, 580
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	3 cut(s)	40, 173, 494
TseI	GCWGC	2 cut(s)	460, 468
Tsp45I	GTSAC	3 cut(s)	40, 173, 494
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	9, 38
ZraI	GACGTC	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.