Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

19827427 .. 19828313

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G017980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCTACCATAACCAGAAAAAAGCTCCTTAACACTGTGACAGCCGTTGACATAGGCTGCAGCAGCTGCAGAAGACCAAAGCTCTTCCACATATTCCGTCCCAAGGCAAAGCTCATCACCACCAAGTTCGGCGGCCGCAAACAAAACCACCACCACTACTCTTCTTCGAGCTCCTACAACAAAGACTCCACCACCACCACATTCTCCCCAAACACCGACGACTACGCTTCGTTTTCCGACCACGGGACAGTCGCCAAGAGCGCCACGCCCGTCAAGGGGTTCGGCAGGGTTGGCGGCGAGAGCGTGGCGGTGGAGAAGGACTCCGGCGACCCTTACTTGGACTTTAGGCATTCCATGCTTCAGATGATTTTGGAGAACGAGATATACTCGAAAGATGATCTCCGGGAGCTTCTCAACTGCTTCTTGCAGCTCAACGCGCCTTGCAACCATGGCATCATCATCAGGGCTTTCACTGACATCTGGAATGGAGTTTTCTCCGTTAGGTCTAGTGCTTCCACAATGCAGCTTCGTCTTGCTCGCAAGTCACGTGACTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

9.54

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	108 - 164	4.1e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	437
AciI	CCGC	4 cut(s)	132, 136, 294, 308
AcoI	YGGCCR	1 cut(s)	133
AcuI	CTGAAG	1 cut(s)	344
AcvI	CACGTG	1 cut(s)	548
AfiI	CCNNNNNNNGG	5 cut(s)	103, 243, 275, 276, 337
AluBI	AGCT	8 cut(s)	25, 66, 82, 112, 171, 409, 430, 526
AluI	AGCT	8 cut(s)	25, 66, 82, 112, 171, 409, 430, 526
Alw21I	GWGCWC	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	66
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	6 cut(s)	57, 60, 63, 66, 427, 523
AspLEI	GCGC	2 cut(s)	263, 439
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	548
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	173
BbvI	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
BceAI	ACGGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	404
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	2 cut(s)	58, 67
BfoI	RGCGCY	1 cut(s)	264
BisI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
BlsI	GCNGC	9 cut(s)	59, 62, 65, 68, 134, 137, 296, 429, 525
Bme1390I	CCNGG	1 cut(s)	404
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	462
BpiI	GAAGAC	1 cut(s)	79
BplI	GAGNNNNNCTC	4 cut(s)	305, 337, 371, 403
BpuMI	CCSGG	1 cut(s)	404
BsaAI	YACGTR	1 cut(s)	548
BsaJI	CCNNGG	3 cut(s)	102, 241, 448
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 243, 275, 276, 337
BseDI	CCNNGG	3 cut(s)	102, 241, 448
BseLI	CCNNNNNNNGG	5 cut(s)	103, 243, 275, 276, 337
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	324, 403
BslFI	GGGAC	2 cut(s)	84, 259
BslI	CCNNNNNNNGG	5 cut(s)	103, 243, 275, 276, 337
BsmFI	GGGAC	2 cut(s)	84, 259
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	397
Bsp19I	CCATGG	1 cut(s)	448
BspACI	CCGC	4 cut(s)	132, 136, 294, 308
BspANI	GGCC	1 cut(s)	135
BspFNI	CGCG	1 cut(s)	437
BspMAI	CTGCAG	2 cut(s)	62, 71
BspQI	GCTCTTC	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	102, 241, 448
BssMI	GATC	1 cut(s)	397
BssT1I	CCWWGG	2 cut(s)	102, 448
Bst4CI	ACNGT	2 cut(s)	37, 250
Bst6I	CTCTTC	2 cut(s)	89, 166
BstAPI	GCANNNNNTGC	2 cut(s)	66, 355
BstBAI	YACGTR	1 cut(s)	548
BstC8I	GCNNGC	1 cut(s)	538
BstDSI	CCRYGG	2 cut(s)	241, 448
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	264
BstHHI	GCGC	2 cut(s)	263, 439
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	8 cut(s)	63, 66, 260, 291, 300, 355, 436, 450
BstSCI	CCNGG	1 cut(s)	402
BstSFI	CTRYAG	2 cut(s)	58, 67
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
BstV2I	GAAGAC	1 cut(s)	79
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	2 cut(s)	241, 448
BtsIMutI	CAGTG	2 cut(s)	33, 471
Cac8I	GCNNGC	1 cut(s)	538
CaiI	CAGNNNCTG	1 cut(s)	66
CciNI	GCGGCCGC	1 cut(s)	133
CfoI	GCGC	2 cut(s)	263, 439
CviAII	CATG	2 cut(s)	355, 449
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	2 cut(s)	89, 166
EarI	CTCTTC	2 cut(s)	89, 166
Ecl136II	GAGCTC	1 cut(s)	171
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	102, 448
Eco24I	GRGCYC	1 cut(s)	173
Eco52I	CGGCCG	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	344
Eco72I	CACGTG	1 cut(s)	548
EcoICRI	GAGCTC	1 cut(s)	171
EcoT14I	CCWWGG	2 cut(s)	102, 448
EcoT38I	GRGCYC	1 cut(s)	173
ErhI	CCWWGG	2 cut(s)	102, 448
FaeI	CATG	2 cut(s)	358, 452
FaiI	YATR	6 cut(s)	11, 53, 92, 356, 385, 450
FaqI	GGGAC	2 cut(s)	84, 259
FatI	CATG	2 cut(s)	354, 448
Fnu4HI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
FspBI	CTAG	1 cut(s)	507
GlaI	GCGC	2 cut(s)	262, 438
GluI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
HaeII	RGCGCY	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	2 cut(s)	324, 403
HhaI	GCGC	2 cut(s)	263, 439
Hin1II	CATG	2 cut(s)	358, 452
Hin6I	GCGC	2 cut(s)	261, 437
HinP1I	GCGC	2 cut(s)	261, 437
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	2 cut(s)	185, 320
HpaII	CCGG	2 cut(s)	324, 403
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	238, 363
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	310
HpyCH4III	ACNGT	2 cut(s)	37, 250
HpyCH4IV	ACGT	1 cut(s)	547
HpyCH4V	TGCA	5 cut(s)	60, 69, 427, 444, 523
HpyF10VI	GCNNNNNNNGC	8 cut(s)	63, 66, 260, 291, 300, 355, 436, 450
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	2 cut(s)	358, 452
HspAI	GCGC	2 cut(s)	261, 437
Kzo9I	GATC	1 cut(s)	397
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	30, 176, 406
LpnPI	CCDG	6 cut(s)	28, 271, 337, 416, 448, 466
Lsp1109I	GCAGC	6 cut(s)	44, 53, 72, 75, 439, 535
LweI	GCATC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	3 cut(s)	37, 543, 548
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	4 cut(s)	76, 84, 153, 156
MhlI	GDGCHC	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	179, 314
MmeI	TCCRAC	1 cut(s)	261
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	2 cut(s)	324, 403
MspR9I	CCNGG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	349
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	8 cut(s)	63, 66, 260, 291, 300, 355, 436, 450
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	448
NdeII	GATC	1 cut(s)	397
NlaIII	CATG	2 cut(s)	358, 452
NmuCI	GTSAC	3 cut(s)	37, 543, 548
NotI	GCGGCCGC	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	544
PctI	GAATGC	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	9 cut(s)	59, 62, 65, 68, 134, 137, 296, 429, 525
PleI	GAGTC	2 cut(s)	179, 314
PmaCI	CACGTG	1 cut(s)	548
PmlI	CACGTG	1 cut(s)	548
PpsI	GAGTC	2 cut(s)	179, 314
Ppu21I	YACGTR	1 cut(s)	548
Psp124BI	GAGCTC	1 cut(s)	173
PspCI	CACGTG	1 cut(s)	548
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PstI	CTGCAG	2 cut(s)	62, 71
PstNI	CAGNNNCTG	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	66
SacI	GAGCTC	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	9 cut(s)	58, 61, 64, 67, 133, 136, 295, 428, 524
Sau3AI	GATC	1 cut(s)	397
SchI	GAGTC	2 cut(s)	179, 314
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	173
SfaNI	GCATC	1 cut(s)	462
SfcI	CTRYAG	2 cut(s)	58, 67
SsiI	CCGC	4 cut(s)	132, 136, 294, 308
SspMI	CTAG	1 cut(s)	507
SstI	GAGCTC	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	2 cut(s)	102, 448
TaaI	ACNGT	2 cut(s)	37, 250
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	2 cut(s)	167, 389
TauI	GCSGC	3 cut(s)	135, 138, 297
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	2 cut(s)	40, 478
TseFI	GTSAC	3 cut(s)	37, 543, 548
TseI	GCWGC	6 cut(s)	57, 60, 63, 66, 427, 523
Tsp45I	GTSAC	3 cut(s)	37, 543, 548
TspGWI	ACGGA	2 cut(s)	86, 487
TspRI	CASTG	2 cut(s)	40, 478
XspI	CTAG	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.