Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

43527173 .. 43528112

Gene Structure 940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034482

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTTCTAGCAAAAAGAACAAGTTTCTTAAAACCCTAGTCACATCCAGTATTCGAGGCTGTGGTTGTGGAAGACCGAAGCTCTCAGACGTTTTTGAACCAACCCCAAAACCCAAAATCCCCATTTGCAAAACCACCCCAAATCATCAACCCCATTGCTCTTCAAGTTCTTGTGACATAAGAAATGGAAGTTTCACAGTCGACGACGATGACGATGACGAGGATCAGTGCACTTCCACCACCACCTCTTTCAACAACGACTCAACATTATCTTCATCCCAACCTTCAGATTCAGCAGAGACTCAGGGTGCAAAGAAGTCAAAGCCTCCGAACCCACCGCTGACCAAAATCAACAACAGCATTGCCGTGGTGAAAGATTCCGACGACCCTTATCAGGATTTCCGGCAGTCCATGCTTCAAATGATCGTAGAGAAGGAGATTTATTCCAAGGAGGAGCTCCAGGAGCTGCTGAGCTGCTTCCTCGAACTCAATTCCAGACGTCACCATGATGTTATCATTGAAGCTTTCACAGAAATATGGAATGGTGATCTGGTTGATATTGCAGGGAAACGAATCGTACGTGTGAATCCCAGATGTGGAACGTGTGAAGATCATAGCCATGTGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

211

Amino Acids

23.43

Weight (kDa)

5.8

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	127 - 181	1.1e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	1 cut(s)	338
AclWI	GGATC	1 cut(s)	231
AcuI	CTGAAG	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	499
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	2 cut(s)	394, 596
AflIII	ACRYGT	2 cut(s)	580, 602
AgsI	TTSAA	5 cut(s)	98, 165, 253, 419, 521
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	5 cut(s)	82, 457, 466, 474, 524
AluI	AGCT	5 cut(s)	82, 457, 466, 474, 524
Alw21I	GWGCWC	2 cut(s)	233, 459
Alw26I	GTCTC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	229
AlwI	GGATC	1 cut(s)	231
AlwNI	CAGNNNCTG	1 cut(s)	466
ApaLI	GTGCAC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	466, 474
AsuHPI	GGTGA	3 cut(s)	382, 494, 557
BaeGI	GKGCMC	1 cut(s)	233
BanII	GRGCYC	1 cut(s)	459
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	233, 459
BbvI	GCAGC	2 cut(s)	453, 461
BceAI	ACGGC	1 cut(s)	350
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	9, 38
BisI	GCNGC	2 cut(s)	467, 475
BlpI	GCTNAGC	1 cut(s)	470
BlsI	GCNGC	2 cut(s)	468, 476
Bme1390I	CCNGG	1 cut(s)	461
BmrFI	CCNGG	1 cut(s)	461
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	470
BsaAI	YACGTR	1 cut(s)	581
BsaHI	GRCGYC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	366, 447
Bsc4I	CCNNNNNNNGG	2 cut(s)	394, 596
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	154, 360
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	2 cut(s)	366, 447
BseGI	GGATG	2 cut(s)	44, 275
BseLI	CCNNNNNNNGG	2 cut(s)	394, 596
BseMI	GCAATG	2 cut(s)	154, 360
BseMII	CTCAG	3 cut(s)	99, 317, 461
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	453, 461
BsiHKAI	GWGCWC	2 cut(s)	233, 459
BsiSI	CCGG	1 cut(s)	403
BsiWI	CGTACG	1 cut(s)	577
BslI	CCNNNNNNNGG	2 cut(s)	394, 596
BsmAI	GTCTC	1 cut(s)	293
Bsp1286I	GDGCHC	2 cut(s)	233, 459
Bsp143I	GATC	4 cut(s)	223, 423, 547, 610
Bsp1720I	GCTNAGC	1 cut(s)	470
BspACI	CCGC	1 cut(s)	338
BspCNI	CTCAG	3 cut(s)	98, 316, 462
BspPI	GGATC	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	166
BsrDI	GCAATG	2 cut(s)	154, 360
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	366, 447
BssMI	GATC	4 cut(s)	223, 423, 547, 610
BssNI	GRCGYC	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	447
Bst2UI	CCWGG	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	412
BstBAI	YACGTR	1 cut(s)	581
BstDEI	CTNAG	3 cut(s)	85, 303, 470
BstDSI	CCRYGG	1 cut(s)	366
BstF5I	GGATG	2 cut(s)	44, 275
BstKTI	GATC	4 cut(s)	226, 426, 550, 613
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	4 cut(s)	223, 423, 547, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	412, 463
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	2 cut(s)	453, 461
BstV2I	GAAGAC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	2 cut(s)	44, 275
BtsIMutI	CAGTG	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	3 cut(s)	412, 506, 620
CviJI	RGCY	8 cut(s)	60, 82, 325, 457, 466, 474, 524, 618
CviKI_1	RGCY	8 cut(s)	60, 82, 325, 457, 466, 474, 524, 618
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	3 cut(s)	85, 303, 470
DpnI	GATC	4 cut(s)	225, 425, 549, 612
DpnII	GATC	4 cut(s)	223, 423, 547, 610
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	447
Eco24I	GRGCYC	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	1 cut(s)	270
EcoICRI	GAGCTC	1 cut(s)	457
EcoRII	CCWGG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	447
FaeI	CATG	3 cut(s)	415, 509, 623
FaiI	YATR	6 cut(s)	179, 413, 507, 538, 615, 621
FatI	CATG	3 cut(s)	411, 505, 619
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	467, 475
FokI	GGATG	2 cut(s)	31, 262
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	2 cut(s)	467, 475
FspBI	CTAG	2 cut(s)	9, 38
GluI	GCNGC	2 cut(s)	467, 475
GsuI	CTGGAG	1 cut(s)	443
HapII	CCGG	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	499
Hin1II	CATG	3 cut(s)	415, 509, 623
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	6 cut(s)	260, 290, 301, 377, 573, 586
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	3 cut(s)	382, 494, 557
Hpy166II	GTNNAC	2 cut(s)	202, 231
Hpy188I	TCNGA	4 cut(s)	88, 289, 330, 382
Hpy188III	TCNNGA	2 cut(s)	395, 495
Hpy8I	GTNNAC	2 cut(s)	202, 231
Hpy99I	CGWCG	3 cut(s)	206, 209, 386
HpyAV	CCTTC	2 cut(s)	294, 427
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	4 cut(s)	90, 499, 580, 602
HpyCH4V	TGCA	4 cut(s)	129, 231, 311, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	412, 463
HpyF3I	CTNAG	3 cut(s)	85, 303, 470
HpySE526I	ACGT	4 cut(s)	90, 499, 580, 602
Hsp92I	GRCGYC	1 cut(s)	499
Hsp92II	CATG	3 cut(s)	415, 509, 623
Kzo9I	GATC	4 cut(s)	223, 423, 547, 610
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	3 cut(s)	454, 462, 463
Lsp1109I	GCAGC	2 cut(s)	453, 461
MaeI	CTAG	2 cut(s)	9, 38
MaeII	ACGT	4 cut(s)	90, 499, 580, 602
MaeIII	GTNAC	3 cut(s)	40, 173, 500
MalI	GATC	4 cut(s)	225, 425, 549, 612
MboI	GATC	4 cut(s)	223, 423, 547, 610
MboII	GAAGA	4 cut(s)	84, 153, 264, 620
MhlI	GDGCHC	2 cut(s)	233, 459
MluCI	AATT	1 cut(s)	490
MlyI	GAGTC	2 cut(s)	254, 295
MmeI	TCCRAC	1 cut(s)	405
MnlI	CCTC	7 cut(s)	50, 214, 256, 336, 445, 491, 618
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	3 cut(s)	365, 507, 618
MspA1I	CMGCKG	1 cut(s)	340
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	412, 463
NdeII	GATC	4 cut(s)	223, 423, 547, 610
NlaIII	CATG	3 cut(s)	415, 509, 623
NmuCI	GTSAC	3 cut(s)	40, 173, 500
PciSI	GCTCTTC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 577
PfeI	GAWTC	4 cut(s)	290, 377, 573, 586
Pfl23II	CGTACG	1 cut(s)	577
PfoI	TCCNGGA	1 cut(s)	459
PkrI	GCNGC	2 cut(s)	468, 476
PleI	GAGTC	2 cut(s)	254, 295
PpsI	GAGTC	2 cut(s)	254, 295
Ppu21I	YACGTR	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspLI	CGTACG	1 cut(s)	577
PstNI	CAGNNNCTG	1 cut(s)	466
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	3 cut(s)	365, 507, 618
SacI	GAGCTC	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	200
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	2 cut(s)	467, 475
Sau3AI	GATC	4 cut(s)	223, 423, 547, 610
SchI	GAGTC	2 cut(s)	254, 295
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	2 cut(s)	233, 459
SmiMI	CAYNNNNRTG	3 cut(s)	365, 507, 618
Sse9I	AATT	1 cut(s)	490
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	9, 38
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	459
StyI	CCWWGG	1 cut(s)	447
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	4 cut(s)	93, 502, 583, 605
TaqI	TCGA	3 cut(s)	55, 201, 483
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	490
TfiI	GAWTC	4 cut(s)	290, 377, 573, 586
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	3 cut(s)	40, 173, 500
TseI	GCWGC	2 cut(s)	466, 474
Tsp45I	GTSAC	3 cut(s)	40, 173, 500
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	1 cut(s)	233
VneI	GTGCAC	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	9, 38
ZraI	GACGTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.