Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

43583386 .. 43584122

Gene Structure 737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCTTCTAGCAAAAAGAACAAGTTTCTGAAAACCCTAGTCACATCCAGTATTCGAGGCTGTGGTTGTGGAAGACCGAAGCTCTCAGACGTTTTTGAACCAACCCCAAAACCCAAAATCCCCATTTGCAAAACCACCCCAAATCAACAACCCCGTTCCTCTTCAAGTTCTTGTGACATAAGAAATGGAAGTTTCACAGTCGACGACGATGACGATGACGATGACGAGGATCAGTGCACGTCCACCACCATCTCTTTCAACAACGACTCAGCATTATCTTCATCCCAACCTTCAGATTCAGTAGAGACTCAGGGTGTAAAGAAGTCAAAGCCTCCGAACCCACCGCTAACCAAAATCAACAACAGCATTGCCGTTGTGAAAGATTCCGACGACCCTTATCAGGATTTCCGGCAGTCCATGCTTCAAATGATCATAGAGAAGGAGATTTATTCCAAGGAGGAGCTCCAGGAGCTGCTGAGCTGCTTCCTCGAACTCAATTCCAGACGTCACCGTGATGTTATCATTGAAGCTTTCACAGAAATATGGAATGGTGATCTGGTTGATATTGCAGGGAAACGAATCGTACGTGTGAATCCCAGATGTGGAACGTGTGAAGATCATAGCCATGTGAGGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

212

Amino Acids

23.73

Weight (kDa)

5.44

Isoelectric Point (pI)

56.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ovate	PF04844	129 - 183	4.4e-24	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	1 cut(s)	344
AclWI	GGATC	1 cut(s)	237
AcuI	CTGAAG	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	505
AfaI	GTAC	1 cut(s)	585
AfiI	CCNNNNNNNGG	2 cut(s)	400, 602
AflIII	ACRYGT	2 cut(s)	586, 608
AgsI	TTSAA	5 cut(s)	98, 165, 259, 425, 527
AjiI	CACGTC	1 cut(s)	240
AjnI	CCWGG	1 cut(s)	465
AluBI	AGCT	5 cut(s)	82, 463, 472, 480, 530
AluI	AGCT	5 cut(s)	82, 463, 472, 480, 530
Alw21I	GWGCWC	2 cut(s)	239, 465
Alw26I	GTCTC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	235
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	472
ApaLI	GTGCAC	1 cut(s)	235
ApeKI	GCWGC	2 cut(s)	472, 480
AsuHPI	GGTGA	2 cut(s)	500, 563
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	239, 465
BbvI	GCAGC	2 cut(s)	459, 467
BccI	CCATC	1 cut(s)	257
BceAI	ACGGC	1 cut(s)	356
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	2 cut(s)	9, 38
BisI	GCNGC	2 cut(s)	473, 481
BlpI	GCTNAGC	1 cut(s)	476
BlsI	GCNGC	2 cut(s)	474, 482
Bme1390I	CCNGG	1 cut(s)	467
BmgBI	CACGTC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	587
BsaHI	GRCGYC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 602
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	2 cut(s)	44, 281
BseLI	CCNNNNNNNGG	2 cut(s)	400, 602
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	99, 282, 323, 467
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	459, 467
BsiHKAI	GWGCWC	2 cut(s)	239, 465
BsiSI	CCGG	1 cut(s)	409
BsiWI	CGTACG	1 cut(s)	583
BslI	CCNNNNNNNGG	2 cut(s)	400, 602
BsmAI	GTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	2 cut(s)	239, 465
Bsp143I	GATC	4 cut(s)	229, 429, 553, 616
Bsp1720I	GCTNAGC	1 cut(s)	476
BspACI	CCGC	1 cut(s)	344
BspCNI	CTCAG	4 cut(s)	98, 281, 322, 468
BspPI	GGATC	1 cut(s)	237
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	4 cut(s)	229, 429, 553, 616
BssNI	GRCGYC	1 cut(s)	505
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	199, 512
Bst6I	CTCTTC	1 cut(s)	166
BstACI	GRCGYC	1 cut(s)	505
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstBAI	YACGTR	1 cut(s)	587
BstDEI	CTNAG	4 cut(s)	85, 268, 309, 476
BstF5I	GGATG	2 cut(s)	44, 281
BstKTI	GATC	4 cut(s)	232, 432, 556, 619
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	229, 429, 553, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	418, 469
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	239
BstV1I	GCAGC	2 cut(s)	459, 467
BstV2I	GAAGAC	1 cut(s)	79
BtrI	CACGTC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	44, 281
BtsIMutI	CAGTG	1 cut(s)	239
CaiI	CAGNNNCTG	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	584
CviAII	CATG	2 cut(s)	418, 626
CviJI	RGCY	8 cut(s)	60, 82, 331, 463, 472, 480, 530, 624
CviKI_1	RGCY	8 cut(s)	60, 82, 331, 463, 472, 480, 530, 624
CviQI	GTAC	1 cut(s)	584
DdeI	CTNAG	4 cut(s)	85, 268, 309, 476
DpnI	GATC	4 cut(s)	231, 431, 555, 618
DpnII	GATC	4 cut(s)	229, 429, 553, 616
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	463
Eco130I	CCWWGG	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	465
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	453
EcoT38I	GRGCYC	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	2 cut(s)	421, 629
FaiI	YATR	6 cut(s)	179, 419, 434, 544, 621, 627
FatI	CATG	2 cut(s)	417, 625
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	473, 481
FokI	GGATG	2 cut(s)	31, 268
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	473, 481
FspBI	CTAG	2 cut(s)	9, 38
GluI	GCNGC	2 cut(s)	473, 481
GsuI	CTGGAG	1 cut(s)	449
HapII	CCGG	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	505
Hin1II	CATG	2 cut(s)	421, 629
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HindIII	AAGCTT	1 cut(s)	528
HinfI	GANTC	6 cut(s)	266, 296, 307, 383, 579, 592
HpaII	CCGG	1 cut(s)	409
HphI	GGTGA	2 cut(s)	500, 563
Hpy166II	GTNNAC	3 cut(s)	202, 237, 243
Hpy188I	TCNGA	5 cut(s)	30, 88, 295, 336, 388
Hpy188III	TCNNGA	2 cut(s)	401, 501
Hpy8I	GTNNAC	3 cut(s)	202, 237, 243
Hpy99I	CGWCG	3 cut(s)	206, 209, 392
HpyAV	CCTTC	2 cut(s)	300, 433
HpyCH4III	ACNGT	2 cut(s)	199, 512
HpyCH4IV	ACGT	5 cut(s)	90, 239, 505, 586, 608
HpyCH4V	TGCA	3 cut(s)	129, 237, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	418, 469
HpyF3I	CTNAG	4 cut(s)	85, 268, 309, 476
HpySE526I	ACGT	5 cut(s)	90, 239, 505, 586, 608
Hsp92I	GRCGYC	1 cut(s)	505
Hsp92II	CATG	2 cut(s)	421, 629
Ksp22I	TGATCA	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	229, 429, 553, 616
LmnI	GCTCC	3 cut(s)	460, 468, 469
Lsp1109I	GCAGC	2 cut(s)	459, 467
MaeI	CTAG	2 cut(s)	9, 38
MaeII	ACGT	5 cut(s)	90, 239, 505, 586, 608
MaeIII	GTNAC	3 cut(s)	40, 173, 506
MalI	GATC	4 cut(s)	231, 431, 555, 618
MboI	GATC	4 cut(s)	229, 429, 553, 616
MboII	GAAGA	4 cut(s)	84, 153, 270, 626
MhlI	GDGCHC	2 cut(s)	239, 465
MluCI	AATT	1 cut(s)	496
MlyI	GAGTC	2 cut(s)	260, 301
MmeI	TCCRAC	1 cut(s)	411
MnlI	CCTC	7 cut(s)	50, 169, 220, 342, 451, 497, 624
MslI	CAYNNNNRTG	2 cut(s)	513, 624
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	467
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	418, 469
NdeII	GATC	4 cut(s)	229, 429, 553, 616
NlaIII	CATG	2 cut(s)	421, 629
NmuCI	GTSAC	3 cut(s)	40, 173, 506
PcsI	WCGNNNNNNNCGW	2 cut(s)	210, 583
PfeI	GAWTC	4 cut(s)	296, 383, 579, 592
Pfl23II	CGTACG	1 cut(s)	583
PfoI	TCCNGGA	1 cut(s)	465
PkrI	GCNGC	2 cut(s)	474, 482
PleI	GAGTC	2 cut(s)	260, 301
PpsI	GAGTC	2 cut(s)	260, 301
Ppu21I	YACGTR	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspLI	CGTACG	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	585
RsaNI	GTAC	1 cut(s)	584
RseI	CAYNNNNRTG	2 cut(s)	513, 624
SacI	GAGCTC	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	200
SatI	GCNGC	2 cut(s)	473, 481
Sau3AI	GATC	4 cut(s)	229, 429, 553, 616
SchI	GAGTC	2 cut(s)	260, 301
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	2 cut(s)	239, 465
SmiMI	CAYNNNNRTG	2 cut(s)	513, 624
Sse9I	AATT	1 cut(s)	496
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	9, 38
SstI	GAGCTC	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	2 cut(s)	199, 512
TaiI	ACGT	5 cut(s)	93, 242, 508, 589, 611
TaqI	TCGA	3 cut(s)	55, 201, 489
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	496
TfiI	GAWTC	4 cut(s)	296, 383, 579, 592
TscAI	CASTG	1 cut(s)	239
TseFI	GTSAC	3 cut(s)	40, 173, 506
TseI	GCWGC	2 cut(s)	472, 480
Tsp45I	GTSAC	3 cut(s)	40, 173, 506
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	239
VneI	GTGCAC	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	2 cut(s)	9, 38
ZraI	GACGTC	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.