FvH4_6g19871

Transcriptional repressor, ovate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004746
Physical Location & Seq
Reverse (-)
13360016 .. 13360904
889 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19871.t1

Sequence Viewer

Length: 801 bp
ATGAGCCTTCCTTCACGTGAGACTATCAGCCTGTCATTAAAGAGAAAAACAAGAGCTGTAATCATAGCAAGCACAGGGACCCCTCAGGAGAGCAGCGGAGAGCTCACATGCACGCTTTTATATACTCACTCCCATCACTCCCCCCCACACCCTTCTTCATCCTCATCCCAACTCTCACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTTCTGCTTCACTCCTTCACCAACAATGCCTACCATAACCAGAAAGAAGCTCCTCAACACTGTCACCGCCGTCGACATAGGCTGCAGCAGCTGCAGAAGACCAAGGCTCTTCCATATGTTCCGCAATAAAGCCAAGCCCGTCACCACCAAGTTCGGCGGTCGCAAACAAAGCCACCACAACTACTCTTCTGCTTCGAGCTCCTACAACAAAGACTCCTCCACCACCACCACATTCTCCCCCAACACCGACGACTACGCTTCGTTTTCCGACCACGAGACCGTCGCCAAGACCGCCACGCCCGTCAAGGGGTTCGGGAGAGTTGGCGGGGAGAGCGTTGCGGTGGAGAAAGACTCCGGCGACCCTTACTTGGACTTCAGGCATTCCATGCTTCAGATGATTTTGGAGAACGAGATATACTCGAAAGATGATCTCCGGGAGCTTCTCAACTGTTTCCTGCAGCTCAATGCTCCCTGCAACCATGGCATAATCATCAGGGCTTTCACTGACATCTGGAATGGAGTCTTCTCGGTTAGGTCTAGTGCTGCCACAATGCAGCTTCGTCTTGCTCGCAAGTCACGTGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ovate

Protein Analysis

267

Amino Acids

29.85

Weight (kDa)

9.44

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 189 - 245 8e-24 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 285
AciI CCGC 7 cut(s) 96, 279, 334, 369, 504, 537, 551
AcuI CTGAAG 2 cut(s) 571, 587
AcvI CACGTG 2 cut(s) 17, 791
AfiI CCNNNNNNNGG 3 cut(s) 518, 519, 580
AluBI AGCT 8 cut(s) 56, 103, 262, 303, 411, 652, 673, 769
AluI AGCT 8 cut(s) 56, 103, 262, 303, 411, 652, 673, 769
Alw21I GWGCWC 2 cut(s) 105, 413
Alw26I GTCTC 2 cut(s) 14, 482
AlwNI CAGNNNCTG 1 cut(s) 303
ApeKI GCWGC 8 cut(s) 93, 294, 297, 300, 303, 670, 755, 766
AspS9I GGNCC 1 cut(s) 78
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 3 cut(s) 222, 268, 346
AvaII GGWCC 1 cut(s) 78
AxyI CCTNAGG 1 cut(s) 84
BanII GRGCYC 2 cut(s) 105, 413
BauI CACGAG 1 cut(s) 485
BbrPI CACGTG 2 cut(s) 17, 791
BbsI GAAGAC 2 cut(s) 316, 727
Bbv12I GWGCWC 2 cut(s) 105, 413
BbvI GCAGC 8 cut(s) 105, 281, 290, 309, 312, 682, 742, 778
BccI CCATC 1 cut(s) 141
BceAI ACGGC 1 cut(s) 266
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 2 cut(s) 14, 482
BfaI CTAG 2 cut(s) 750, 799
BfmI CTRYAG 3 cut(s) 295, 304, 668
BisI GCNGC 8 cut(s) 94, 295, 298, 301, 304, 671, 756, 767
BlsI GCNGC 8 cut(s) 95, 296, 299, 302, 305, 672, 757, 768
Bme1390I CCNGG 1 cut(s) 647
Bme18I GGWCC 1 cut(s) 78
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 2 cut(s) 79, 80
BmrFI CCNGG 1 cut(s) 647
BpiI GAAGAC 2 cut(s) 316, 727
BplI GAGNNNNNCTC 4 cut(s) 548, 580, 614, 646
BpuMI CCSGG 1 cut(s) 647
BsaAI YACGTR 2 cut(s) 17, 791
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 2 cut(s) 314, 691
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 519, 580
Bse21I CCTNAGG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 314, 691
BseGI GGATG 2 cut(s) 158, 164
BseLI CCNNNNNNNGG 3 cut(s) 518, 519, 580
BseMII CTCAG 1 cut(s) 98
BseRI GAGGAG 2 cut(s) 254, 418
BseXI GCAGC 8 cut(s) 105, 281, 290, 309, 312, 682, 742, 778
Bsh1285I CGRYCG 1 cut(s) 373
BsiEI CGRYCG 1 cut(s) 373
BsiHKAI GWGCWC 2 cut(s) 105, 413
BsiSI CCGG 2 cut(s) 567, 646
BslFI GGGAC 1 cut(s) 91
BslI CCNNNNNNNGG 3 cut(s) 518, 519, 580
BsmAI GTCTC 2 cut(s) 14, 482
BsmFI GGGAC 1 cut(s) 91
BsmI GAATGC 1 cut(s) 592
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 2 cut(s) 105, 413
Bsp143I GATC 1 cut(s) 640
Bsp19I CCATGG 1 cut(s) 691
BspACI CCGC 7 cut(s) 96, 279, 334, 369, 504, 537, 551
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 2 cut(s) 79, 80
BspMAI CTGCAG 3 cut(s) 299, 308, 672
BspQI GCTCTTC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 482
BssECI CCNNGG 2 cut(s) 314, 691
BssMI GATC 1 cut(s) 640
BssSI CACGAG 1 cut(s) 485
BssT1I CCWWGG 2 cut(s) 314, 691
Bst2BI CACGAG 1 cut(s) 485
Bst4CI ACNGT 3 cut(s) 274, 493, 662
Bst6I CTCTTC 3 cut(s) 185, 326, 403
BstAPI GCANNNNNTGC 2 cut(s) 303, 598
BstBAI YACGTR 2 cut(s) 17, 791
BstC8I GCNNGC 3 cut(s) 70, 113, 781
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 691
BstF5I GGATG 2 cut(s) 158, 164
BstKTI GATC 1 cut(s) 643
BstMAI GTCTC 2 cut(s) 14, 482
BstMBI GATC 1 cut(s) 640
BstMCI CGRYCG 1 cut(s) 373
BstMWI GCNNNNNNNGC 7 cut(s) 300, 303, 381, 503, 543, 598, 693
BstNSI RCATGY 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 645
BstSFI CTRYAG 3 cut(s) 295, 304, 668
BstV1I GCAGC 8 cut(s) 105, 281, 290, 309, 312, 682, 742, 778
BstV2I GAAGAC 2 cut(s) 316, 727
Bsu36I CCTNAGG 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 691
BtsCI GGATG 2 cut(s) 158, 164
BtsIMutI CAGTG 2 cut(s) 270, 714
Cac8I GCNNGC 3 cut(s) 70, 113, 781
CaiI CAGNNNCTG 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 78
CviAII CATG 3 cut(s) 108, 598, 692
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 642
DpnII GATC 1 cut(s) 640
Eam1104I CTCTTC 3 cut(s) 185, 326, 403
EarI CTCTTC 3 cut(s) 185, 326, 403
Ecl136II GAGCTC 2 cut(s) 103, 411
Eco130I CCWWGG 2 cut(s) 314, 691
Eco24I GRGCYC 2 cut(s) 105, 413
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 78
Eco53kI GAGCTC 2 cut(s) 103, 411
Eco57I CTGAAG 2 cut(s) 571, 587
Eco72I CACGTG 2 cut(s) 17, 791
Eco81I CCTNAGG 1 cut(s) 84
EcoICRI GAGCTC 2 cut(s) 103, 411
EcoO109I RGGNCCY 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 314, 691
EcoT38I GRGCYC 2 cut(s) 105, 413
ErhI CCWWGG 2 cut(s) 314, 691
FaeI CATG 3 cut(s) 111, 601, 695
FaqI GGGAC 1 cut(s) 91
FatI CATG 3 cut(s) 107, 597, 691
FauI CCCGC 1 cut(s) 530
FauNDI CATATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 8 cut(s) 94, 295, 298, 301, 304, 671, 756, 767
FokI GGATG 2 cut(s) 145, 151
FriOI GRGCYC 2 cut(s) 105, 413
Fsp4HI GCNGC 8 cut(s) 94, 295, 298, 301, 304, 671, 756, 767
FspBI CTAG 2 cut(s) 750, 799
GluI GCNGC 8 cut(s) 94, 295, 298, 301, 304, 671, 756, 767
HapII CCGG 2 cut(s) 567, 646
Hin1II CATG 3 cut(s) 111, 601, 695
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 3 cut(s) 425, 563, 732
HpaII CCGG 2 cut(s) 567, 646
HphI GGTGA 3 cut(s) 222, 268, 346
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 481, 606
Hpy188III TCNNGA 3 cut(s) 86, 526, 724
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 3 cut(s) 287, 464, 497
HpyAV CCTTC 5 cut(s) 17, 21, 162, 220, 237
HpyCH4III ACNGT 3 cut(s) 274, 493, 662
HpyCH4IV ACGT 2 cut(s) 16, 790
HpyCH4V TGCA 6 cut(s) 111, 297, 306, 670, 687, 766
HpyF10VI GCNNNNNNNGC 7 cut(s) 300, 303, 381, 503, 543, 598, 693
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 16, 790
Hsp92II CATG 3 cut(s) 111, 601, 695
KflI GGGWCCC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 640
LguI GCTCTTC 1 cut(s) 326
LmnI GCTCC 4 cut(s) 267, 416, 649, 685
Lsp1109I GCAGC 8 cut(s) 105, 281, 290, 309, 312, 682, 742, 778
MaeI CTAG 2 cut(s) 750, 799
MaeII ACGT 2 cut(s) 16, 790
MaeIII GTNAC 4 cut(s) 274, 352, 786, 791
MalI GATC 1 cut(s) 642
MboI GATC 1 cut(s) 640
MhlI GDGCHC 2 cut(s) 105, 413
MlyI GAGTC 3 cut(s) 419, 557, 741
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 4 cut(s) 93, 172, 275, 439
MseI TTAA 1 cut(s) 38
MspA1I CMGCKG 2 cut(s) 96, 303
MspI CCGG 2 cut(s) 567, 646
MspR9I CCNGG 1 cut(s) 647
Mva1269I GAATGC 1 cut(s) 592
MwoI GCNNNNNNNGC 7 cut(s) 300, 303, 381, 503, 543, 598, 693
NciI CCSGG 1 cut(s) 647
NcoI CCATGG 1 cut(s) 691
NdeI CATATG 1 cut(s) 327
NdeII GATC 1 cut(s) 640
NlaIII CATG 3 cut(s) 111, 601, 695
NlaIV GGNNCC 2 cut(s) 79, 80
NmuCI GTSAC 4 cut(s) 274, 352, 786, 791
NspI RCATGY 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 326
PcsI WCGNNNNNNNCGW 1 cut(s) 787
PctI GAATGC 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 645
PkrI GCNGC 8 cut(s) 95, 296, 299, 302, 305, 672, 757, 768
PleI GAGTC 3 cut(s) 419, 557, 740
PmaCI CACGTG 2 cut(s) 17, 791
PmlI CACGTG 2 cut(s) 17, 791
PpsI GAGTC 3 cut(s) 419, 557, 740
Ppu21I YACGTR 2 cut(s) 17, 791
PpuMI RGGWCCY 1 cut(s) 78
Psp124BI GAGCTC 2 cut(s) 105, 413
Psp5II RGGWCCY 1 cut(s) 78
PspCI CACGTG 2 cut(s) 17, 791
PspN4I GGNNCC 2 cut(s) 79, 80
PspPI GGNCC 1 cut(s) 78
PspPPI RGGWCCY 1 cut(s) 78
PsrI GAACNNNNNNTAC 2 cut(s) 611, 643
PstI CTGCAG 3 cut(s) 299, 308, 672
PstNI CAGNNNCTG 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 303
SacI GAGCTC 2 cut(s) 105, 413
SalI GTCGAC 1 cut(s) 284
SapI GCTCTTC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 38
SatI GCNGC 8 cut(s) 94, 295, 298, 301, 304, 671, 756, 767
Sau3AI GATC 1 cut(s) 640
Sau96I GGNCC 1 cut(s) 78
SchI GAGTC 3 cut(s) 419, 557, 741
ScrFI CCNGG 1 cut(s) 647
SduI GDGCHC 2 cut(s) 105, 413
SfcI CTRYAG 3 cut(s) 295, 304, 668
SinI GGWCC 1 cut(s) 78
SsiI CCGC 7 cut(s) 96, 279, 334, 369, 504, 537, 551
SspMI CTAG 2 cut(s) 750, 799
SstI GAGCTC 2 cut(s) 105, 413
StyD4I CCNGG 1 cut(s) 645
StyI CCWWGG 2 cut(s) 314, 691
TaaI ACNGT 3 cut(s) 274, 493, 662
TaiI ACGT 2 cut(s) 19, 793
TaqI TCGA 3 cut(s) 285, 407, 632
Tru1I TTAA 1 cut(s) 38
Tru9I TTAA 1 cut(s) 38
TscAI CASTG 2 cut(s) 277, 721
TseFI GTSAC 4 cut(s) 274, 352, 786, 791
TseI GCWGC 8 cut(s) 93, 294, 297, 300, 303, 670, 755, 766
Tsp45I GTSAC 4 cut(s) 274, 352, 786, 791
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 2 cut(s) 277, 721
VpaK11BI GGWCC 1 cut(s) 78
XceI RCATGY 1 cut(s) 111
XmiI GTMKAC 1 cut(s) 285
XspI CTAG 2 cut(s) 750, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.