Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004746

Physical Location & Seq

Genomic Coordinates Reverse (-)

3767702 .. 3768335

Gene Structure 634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1034500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGCCTACAACAACCAGAAGAAAGCTCCGGTTGAGCAAAGTCACGGTCGACATGGGATGCAGCTGCAGAAAACCTATTAAGCTCTTCCAAATATTCCACCCTAAACCTAAACCCTCCTCCAAAACCCTAAAACAAAACAACTACAACCACTTCCCTCCTTCTTCTTCTTCTTCTTCAACCCCACGCAACAACAACAACAACAACAAAGTCTACAAAGACGACTGTGCTCCATTTTTAGTCACAAATTCCGACGCAAAAGCCACGAGGCCCGTCAGGGGAGATGATACTGGAGAACGAGATATACTCGAAAGACGATCTCCGGGAGCTTCTCAACTGTTTCCTGCAGCTCAACTCGCCCTGCAACCACGGCATTATTATCAGGGCATTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0009966 GO:0010646 GO:0023051 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0065007 GO:1900457

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ovate

Protein Analysis

131

Amino Acids

14.68

Weight (kDa)

10.18

Isoelectric Point (pI)

58.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004746)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36026 AT3G52525
fragaria_vesca	FvH4_3g25970 FvH4_6g19871
malus_domestica	MD03G1152300.v1.1 MD11G1172500.v1.1 MD12G1034500.v1.1 MD14G1035700.v1.1
prunus_persica	Prupe.6G139400_v2.0.a1 Prupe.7G098400_v2.0.a1
pyrus_communis	pycom03g10650 pycom11g14530 pycom12g03180 pycom14g03140
rosa_chinensis	RchiOBHm_Chr3g0475301 RchiOBHm_Chr5g0047261
rosa_laevigata	RLG00000023853 RLG00000034482
rosa_multiflora	Rmu_sc0002310.1_g000034 Rmu_sc0003154.1_g000007 Rmu_ssc0000140.1_g000006
rosa_roxburghii	Rroxscaffold_1G00034110 Rroxscaffold_6G00406400
rosa_rugosa	Rorug03G0147800 Rorug05G0235300
rosa_samantha	Rh5AG314200 Rh5BG322800 Rh5CG350000 Rh5DG333800
rosa_wichuraiana	Rw3G017980 Rw5G029360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	48, 210
AcsI	RAATTY	1 cut(s)	244
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	5 cut(s)	25, 63, 82, 326, 347
AluI	AGCT	5 cut(s)	25, 63, 82, 326, 347
Alw21I	GWGCWC	1 cut(s)	229
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	3 cut(s)	60, 63, 344
ApoI	RAATTY	1 cut(s)	244
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	321
BauI	CACGAG	1 cut(s)	262
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	3 cut(s)	50, 72, 356
BceAI	ACGGC	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	321
BfmI	CTRYAG	2 cut(s)	64, 342
BisI	GCNGC	3 cut(s)	61, 64, 345
BlsI	GCNGC	3 cut(s)	62, 65, 346
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	365
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	292
BseDI	CCNNGG	1 cut(s)	365
BseGI	GGATG	1 cut(s)	62
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	3 cut(s)	50, 72, 356
Bsh1285I	CGRYCG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	268
BsiEI	CGRYCG	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	2 cut(s)	28, 320
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	268
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	268
BspMAI	CTGCAG	2 cut(s)	68, 346
BspQI	GCTCTTC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	292
BssECI	CCNNGG	1 cut(s)	365
BssMI	GATC	1 cut(s)	314
BssSI	CACGAG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	262
Bst4CI	ACNGT	3 cut(s)	46, 224, 336
Bst6I	CTCTTC	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	317
BstMBI	GATC	1 cut(s)	314
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 367
BstSCI	CCNGG	1 cut(s)	319
BstSFI	CTRYAG	2 cut(s)	64, 342
BstV1I	GCAGC	3 cut(s)	50, 72, 356
BsuRI	GGCC	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	1 cut(s)	62
BtsIMutI	CAGTG	1 cut(s)	388
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	1 cut(s)	260
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	7 cut(s)	25, 63, 82, 260, 268, 326, 347
CviKI_1	RGCY	7 cut(s)	25, 63, 82, 260, 268, 326, 347
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	55
FaiI	YATR	2 cut(s)	53, 302
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	2 cut(s)	48, 210
Fnu4HI	GCNGC	3 cut(s)	61, 64, 345
FokI	GGATG	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	61, 64, 345
GluI	GCNGC	3 cut(s)	61, 64, 345
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	2 cut(s)	28, 320
HgaI	GACGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	28, 320
Hpy166II	GTNNAC	2 cut(s)	49, 211
Hpy188I	TCNGA	1 cut(s)	250
Hpy8I	GTNNAC	2 cut(s)	49, 211
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	3 cut(s)	46, 224, 336
HpyCH4V	TGCA	4 cut(s)	60, 66, 344, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 367
Hsp92II	CATG	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	314
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	30, 232, 323
LpnPI	CCDG	8 cut(s)	28, 41, 259, 273, 333, 354, 365, 371
Lsp1109I	GCAGC	3 cut(s)	50, 72, 356
LweI	GCATC	1 cut(s)	47
MaeIII	GTNAC	2 cut(s)	40, 238
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	7 cut(s)	30, 76, 153, 156, 159, 162, 165
MhlI	GDGCHC	1 cut(s)	229
MluCI	AATT	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	124, 127, 165, 258
MseI	TTAA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	2 cut(s)	28, 320
MspR9I	CCNGG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	384
MwoI	GCNNNNNNNGC	2 cut(s)	353, 367
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	1 cut(s)	55
NmuCI	GTSAC	2 cut(s)	40, 238
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	384
PfoI	TCCNGGA	1 cut(s)	319
PkrI	GCNGC	3 cut(s)	62, 65, 346
PspPI	GGNCC	1 cut(s)	267
PsrI	GAACNNNNNNTAC	2 cut(s)	285, 317
PstI	CTGCAG	2 cut(s)	68, 346
PvuII	CAGCTG	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	3 cut(s)	61, 64, 345
Sau3AI	GATC	1 cut(s)	314
Sau96I	GGNCC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	1 cut(s)	229
SetI	ASST	7 cut(s)	27, 65, 76, 84, 109, 328, 349
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	2 cut(s)	64, 342
Sse9I	AATT	1 cut(s)	244
SspI	AATATT	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	46, 224, 336
TaqI	TCGA	2 cut(s)	48, 306
TasI	AATT	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	40, 238
TseI	GCWGC	3 cut(s)	60, 63, 344
Tsp45I	GTSAC	2 cut(s)	40, 238
XapI	RAATTY	1 cut(s)	244
XmiI	GTMKAC	2 cut(s)	48, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.